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1 e SETD3 target specificity from histidine to lysine.
2 ly controlled by acylation of an active-site lysine.
3 ls when compared to poly-l-lysine and poly-d-lysine.
4 nteraction network surrounding the catalytic lysine.
5 iciency (k (cat)/K(m) ) on histidine than on lysine.
6 y kidney is reduced by coadministration of l-lysine.
7 loped a covalent docking approach focused on lysine.
8 xyl in beta-tyrosine and N-Boc protection in lysine.
9 ockets exposed with arrays of imidazoles and lysines.
11 e find that heterozygous loss of histone H2A lysine 119 deubiquitinase BAP1 (BRCA1 Associated Protein
12 es catalyze removal of monoubiquitination on lysine 119 of histone H2A (H2AK119ub1) through a multipr
13 168 catalyzes H2A and H2AX ubiquitination on lysine 13/15 (K13/K15) upon DNA damage and promotes the
15 tylated by the acetyltransferase p300/CBP on lysine 152, the key residue that when polyubiquitinated
19 n chickens, we determined that the invariant lysine 170 (K170) of MDV CHPK is required for interindiv
22 ependymomas contain the recurrent histone H3 lysine 27 (H3 K27M) mutation and express the H3 K27M-mim
24 ic protein complex that catalyzes histone H3 lysine 27 (H3K27) methylation to mediate epigenetic sile
26 ription through trimethylation of histone H3 lysine 27 (H3K27me3) and has emerged as an important the
29 ation caused widespread changes in histone 3 lysine 27 acetylation (H3K27ac), and was associated with
30 that the majority do not acquire histone H3 lysine 27 acetylation and no longer interact with their
32 istone lysine residues (acetylated histone 3 lysine 27 and histone 3 lysine 18) flanking the ATF3 pro
33 at pharmacologic inhibition of the histone 3 lysine 27 demethylases KDM6A (UTX) and KDM6B (JMJD3) lea
36 und that genome-wide promotion of histone H3 lysine 27 trimethylation (H3K27me3) enables nitrogen-ind
37 agues show that histone H3 trimethylation on lysine 27, induced by polycomb repressive complex 2 (PRC
38 expression through methylation of histone 3 lysine 27, was essential for repression of numerous gene
40 histone modifications, especially histone H3 lysine-27 dimethylation (H3K27me2), in genome evolution
41 one H3 lysine-9 di-methylation (H3K9me2) and lysine-27 tri-methylation (H3K27me3) are linked to repre
42 ely regulates FOXA1 binding by demethylating lysine 270, adjacent to the wing2 region of the FOXA1 DN
43 he core of a CBD filament comprises residues lysine 274 to glutamate 380 of tau, spanning the last re
44 ed nuclear factor-kappaB RELA methylation at lysine 310 and associated increases in H3K9me2 (histone
45 dy, we discovered that FUS was acetylated at lysine-315/316 (K315/K316) and lysine-510 (K510) residue
46 PAC is determined by the positively charged lysine 319 residue on TM2, and replacing lysine 319 with
47 ged lysine 319 residue on TM2, and replacing lysine 319 with a glutamate residue converts PAC to a ca
48 racted with PHGDH and ubiquitinated PHGDH at lysine 330, leading to PHGDH degradation to suppress ser
49 c marks such as trimethylation of histone H3 lysine 36 (H3K36me3) and DNA methylation play a role in
51 chymal stem cells by impeding methylation at lysine 36 on histone H3 (H3K36) by SETD2, but not by the
55 ring cell-fate change(5), whereas histone H3 lysine 4 (H3K4) trimethylation marks active gene promote
56 M9 subsequently catalyzes tri-methylation of lysine 4 and lysine 36 of Histone H3 in nearby nucleosom
57 tylation (H3K9ac and H3K27ac) and histone H3 lysine 4 methylation (H3K4me) during activation; while d
58 the TrxG - the COMPASS family of histone H3 lysine 4 methyltransferases and the SWI/SNF family of ch
59 ve chromatin mark H3K4me3 (trimethylation of lysine 4 on histone H3), indicative of in vivo training.
60 which were correlated with strong histone H3 lysine 4 trimethylation (H3K4me3) and CCCTC-binding fact
62 etylation of newly synthesized histone H4 on lysines 5 and 12, which accompanies replication-coupled
65 ctivation requires its monoubiquitination on lysine 644 (K644) within the Ig3 domain, localized adjac
66 Upon binding, SIRT7 deacetylates PCAF at lysine 720 (K720), which augments PCAF binding to murine
69 ts in aberrant hypermethylation of histone 3 lysine 9 (H3K9) at loci surrounding DNA breaks, masking
70 translate into activation of the histone H3 lysine 9 (H3K9) methyltransferase Ehmt1 and stabilizatio
72 Conversely, the euchromatin mark histone 3 lysine 9 acetylation (H3K9ac) is abundant in non-heteroc
73 Targeting SIRT1 by RNAi led to elevated H3 lysine 9 acetylation on the promoter region of miR-1185-
75 associated increases in H3K9me2 (histone H3 lysine 9 dimethylation) in the dorsal hippocampus and th
76 activation; while deacetylation, histone H3 lysine 9 methylation (H3K9me) and heterochromatin protei
78 ls, histone deacetylases (HDACs), histone H3 lysine 9 methyltransferase (KMT1/SUV39), and components
79 omatin is characterized by trimethylation of lysine 9 on histone H3, hypoacetylation of histones, and
83 e deacetylase 1 binding, increased histone 4 lysine acetylation and subsequent BRD4-driven transcript
87 caused dynamic changes in the global histone lysine acetylation levels (H3K4ac, H3K9/K14ac and H3K27a
88 t study investigated whether GCN5L1-mediated lysine acetylation regulates cardiac mitochondrial metab
90 ecently, it was reported that NAT1 undergoes lysine acetylation, an important post-translational modi
94 Herein, we report the activity of aryl-alkyl-lysines against C. difficile and associated pathogens.
96 available small-molecule inhibitors, such as lysine analogs, bind unselectively to kringle domains an
97 to catalyze methylation of slightly bulkier lysine analogs, but lack the activity for analogs that p
98 e SPIN1 interface previously shown to bind a lysine and arginine methylated sequence of histone H3.
99 Either supplementation of the media with lysine and arginine or suboptimal temperature appears to
100 helix 8 burial in the inner leaflet, ordered lysine and arginine side chains in the membrane interfac
101 ubular reuptake of glycation free adducts by lysine and arginine transporter proteins in patients wit
102 h cuts specifically after the basic residues lysine and arginine, is the predominant enzyme used for
105 y based on reorganization of a non-conserved lysine and displacement of an additional structured wate
106 from 0.611 and 0.520 to 0.655 and 0.566 for lysine and from 0.723 and 0.640 to 0.734 and 0.643 for a
108 und to be similar in GB to basic amino acids lysine and histidine, and phosphatidic acid and phosphat
111 d all the essential amino acids (EAA) except lysine and threonine, as required by pre-school children
113 complex is negatively regulated by arginine, lysine, and histidine, the amino acids that PQLC2 transp
115 jor amino acid profile composition-arginine, lysine, aspartic acid, alanine, threonine and low levels
118 s achieved through a hydrophobic trimethyl-L-lysine-binding 'cage' formed by BAHCC1(BAH), mediating c
119 ein, we use intact proteins to show that the lysine-binding site of K2(hPg) is a major determinant of
120 hat a small-molecule inhibitor targeting the lysine-binding site of KIV-10 can combat the pathophysio
122 kinase with activating mutations and a caged lysine blocking the active site, we can rapidly switch o
125 with polyinosinic-polycytidylic acid-poly-I-lysine carboxymethylcellulose (poly-ICLC) every 3 weeks
127 thaliana HglS homolog coexpresses with known lysine catabolism enzymes, and mutants show phenotypes c
130 NPs), and stabilized with a shell of poly(l-lysine) cationic polymer (PLL) for simultaneous synergis
132 In addition to a conserved PIP(2)-selective lysine cluster, a larger cationic surface surrounding th
133 oncentrations of the major AGE carboxymethyl-lysine (CML) and the soluble receptor for AGEs (sRAGE) i
134 tty acyl modifications such as myristoylated lysine compared with acetylated counterparts, but the de
136 m water and for the selective recognition of lysine-containing peptides, opening new perspectives in
140 (H3S10ph), which signals the recruitment of lysine deacetylase Hst2 and the removal of lysine 16 ace
141 rimental data on the response of the protein lysine deacetylase SIRT1 to small-molecule activators.
143 we investigated the mechanisms of activated lysine deacetylation and enhanced long-chain acyl-group
144 ffering the acetyl group pool and catalyzing lysine deacetylation, respectively-was developed to mode
145 aciduria type 1 (GA1) is an inborn error of lysine degradation characterized by a specific encephalo
148 hat oncometabolite-induced inhibition of the lysine demethylase KDM4B results in aberrant hypermethyl
149 all interfering RNAs (siRNAs) and histone H3 lysine dimethylation (H3K9me2), without gaining CHH meth
150 y 100 fold greater viscosity than comparable lysine droplets, both of which can be finer tuned by pol
151 ayers of short alternating glutamic acid and lysine (EK) peptides as a facile, highly effective and l
153 xplored further by using bacteria-friendly l-lysine-functionalized cerium oxide nanoparticle coated i
157 tration-dependent cysteine inhibition of CGA-lysine greening was attributed to redox diphenol regener
158 iptional modifications (marks) to histone H3 lysines (H3K4me3, H3K4me1, H3K27ac, H3K27me3, and H3K36m
162 aponica or indica germplasms identified rice Lysine-Histidine-type Transporter 1 (OsLHT1) as a candid
163 In this study, in silico analyses of the lysine histone demethylases (KDMs) involved in diverse b
169 ons that were dependent on the presence of a lysine (K) or a glutamine (Q) at amino acid position 223
171 identifying a novel p53 acetylation site at lysine K136, we found that simultaneous mutations at all
172 f the methyltransferase SETD1B on histone H3 lysine K4 (H3K4) histone trimethylation on inflammatory
174 acts as an H-bond acceptor for the catalytic lysine (K745) in the "alphaC-helix out" inactive state.
175 c the interactions of the natural acetylated lysine (KAc) histone substrate through key interactions
176 velopment and application of atypical acetyl-lysine (KAc) methyl mimetics to take advantage of the di
177 lized in a new histone modification, histone lysine lactylation, to regulate gene expression in macro
180 t lysine-auxotrophic mutant lys- encountered lysine limitation, an evolutionarily novel stress, cells
184 ubiquitin-like modifier (SUMO) proteins to a lysine (Lys) residue on target proteins, enhances EZH2 t
185 Recently, adhesive synergy between flanking lysine (Lys, K) and 3,4-Dihydroxyphenylalanine (DOPA, Y)
187 active site, where it then uses an arginine/lysine-mediated hydrogen-bonding network to reposition t
188 ing an intriguing connection between biotin, lysine metabolism and systemic disease resistance signal
189 accumulated high concentrations of upstream lysine metabolites including Delta1-piperideine-6-carbox
202 in unique to the ASCP genomes, including the lysine methyltransferase SMYD2 and the pancreatic cancer
203 S-adenosylmethionine (SAM)-dependent histone lysine methyltransferases (KMTs), a genuinely important
204 , there are >100 known and candidate protein lysine methyltransferases (PKMTs), many of which are lin
206 rized SET domain (SETD) proteins are protein lysine methyltransferases, but SETD3 was recently demons
207 h structural homology with two known protein lysine methyltransferases-human SETD6 and the plant LSMT
210 e mutations, particularly a glutamic-acid-to-lysine mutation at amino acid residue 627 (E627K) in the
212 a case study, we observe increased in vitro lysine N-malonylation by malonyl-CoA near nucleotide-bin
214 de evidence that the conserved beta-3 strand lysine of protein kinases (Lys111 of PDK1) functions as
216 ations as acetylmimetics to map the relevant lysines on actin for INF2 regulation, focusing on K50, K
217 hesis of des-bromo-des-methyl-jasplakinolide-lysine opens a way to better fluorescent probe perspecti
218 acing corresponding rTRPV1 residue E570 with lysine or glutamine retained capsaicin sensitivity.
220 has been dominated by random modification of lysines or more site-specific labeling of cysteines, eac
221 born error of cationic amino acid (arginine, lysine, ornithine) transport caused by biallelic pathoge
222 nges in the abundance of specific acetylated lysine peptides measured in DKO versus Sirt3 KO hearts w
225 d to proteins provides multiple times of new lysine reaction sites for the growth of subsequent EK la
226 S suggested that intrinsic cysteine, and not lysine, reactivity was important for activity against HC
227 The drug JQ1, which inhibits histone acetyl-lysine reader bromodomains, has shown promise for multip
229 the discovery of a peptide containing methyl lysines recognized by a mAb that binds to native HBHA ~1
230 ubsites, and mutagenesis identified a mobile lysine residue as a key determinant of positional specif
232 ity to modify the net charge of the modified lysine residue from + 1 to - 1 at physiological pH.
234 ining receptors, and that a methionine and a lysine residue in the ligand binding pocket (GluN2D-Met7
235 ains used for modification of their acylated lysine residue in the second, more conserved acylation s
238 ough a mechanism dependent on its C-terminal lysine residue; its deletion led to modest reductions in
239 sult of increased acetylation of key histone lysine residues (acetylated histone 3 lysine 27 and hist
240 mediated by three conserved, surface-exposed lysine residues (triK), which were previously shown to b
241 density is surrounded by the side chains of lysine residues 290 and 294 from R2 and lysine 370 from
243 silon-amino groups of two internal conserved lysine residues by co-expressed toxin-activating acyltra
247 by an E1 ligase inhibitor or by mutating two lysine residues in intracellular loop three causes Smo t
249 direct RNF168 orientation towards the target lysine residues in proximity to the H2A alpha1-extension
250 y oxPLs, forming stable pyrrole adducts with lysine residues in the helices 3-4 of another apoA-I or
251 eraction between tau and LRP1 is mediated by lysine residues in the microtubule-binding repeat region
252 are necessary for recognition of acetylated lysine residues in the N-terminal regions of histones.
253 Mutation of four out of a total of nine lysine residues in Zta largely abrogates its ubiquitinat
254 ts whether both or only one of two conserved lysine residues of the protoxin will be posttranslationa
255 er proteins that bind to specific acetylated lysine residues on histone tails where they facilitate t
258 L-lysine (EPL), a polypeptide formed by ~ 25 lysine residues with known antimicrobial activity agains
259 of the small ubiquitin-like protein NEDD8 to lysine residues, interrupts degradation of DNMT3A1.
265 vention in ovarian cancer, we identified the lysine rich coiled-coil 1 (KRCC1), as a potential target
268 served that truncated constructs lacking the lysine-rich insertion, or the membrane-binding domain pr
271 ubiquitylation of RNAPII itself, at a single lysine (RPB1 K(1268)), is the focal point for DNA-damage
272 nprecedented myristoylation of an N-terminal lysine side chain, providing evidence that NMT acts both
273 ) p300 and its paralog CBP acetylate histone lysine side chains and play critical roles in regulating
274 roducts can provide protein abundance and/or lysine site modification level information all from a si
275 ding information on solvent accessibility of lysine sites, dead end iqPIR cross-linked products can p
280 adenocarcinoma (PDAC), while KDM6A, encoding Lysine-specific demethylase 6A, carries somatic mutation
283 that inhibition of the epigenetic regulator lysine-specific histone demethylase 1A (LSD1) induces a
284 that deprotonate the epsilon-amino group of lysine substrate, also involving two nearby serine resid
287 ransglutaminase in the absence of sufficient lysine through changes to the hydrophobicity of the prot
289 1 ubiquitination, we converted each of these lysines to arginine and found that replacing two of thes
291 wly discovered oncohistone mutations include lysine-to-methionine substitutions at positions 27 and 3
293 t ligands (L1-L5) were synthesized using the lysine-urea-glutamate scaffold, and PSMA inhibition cons
295 Overall, the findings suggest aryl-alkyl-lysines warrant further investigation as novel agents to
297 cts and the model nucleophile N-alpha-acetyl-lysine, we identified the alpha,beta-unsaturated dialdeh
299 such as the identification of N(2)-methyl-l-lysine, which provides insight into the lysine methylome
300 zed virus strains, except for replacement of lysine with arginine at 378th position of the cryptic ep