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1 mESCs can self-renew indefinitely in vitro.
2 mESCs were differentiated into mature Tbr1 or Ctip2-posi
4 ent at bivalent promoters in ground-state 2i mESCs, is necessary, but not sufficient, to establish th
5 ow the utility of ASTAR-seq, we profiled 384 mESCs under naive and primed pluripotent states as well
6 pe mTert protein, was fully functional, as a mESC line with homozygous hmTert alleles proliferated fo
8 tial role in early embryonic development and mESC homeostasis, and offers insights into the functiona
9 d the gene expression profile of embryo- and mESC-derived CPCs and CMs at different developmental sta
12 mechanisms may not yet be fully developed as mESCs express lower levels of IFN-stimulated genes and d
14 compared control and ERbeta knockout (BERKO) mESCs at defined stages of neural development and examin
15 scripts are differentially expressed between mESCs and mEpiSCs and that these genes show expected cha
18 ' RNA analyses, a mouse embryonic stem cell (mESC) complementation assay and retrieval of patient-rel
19 ChR2) transfected mouse embryonic stem cell (mESC) derived motor neurons to explore short and long-te
20 ing and modulates mouse embryonic stem cell (mESC) differentiation in part through deacetylation of c
21 the analysis of murine embryonic stem cell (mESC) differentiation in vitro in response to inducers o
22 is study, we used mouse embryonic stem cell (mESC) differentiation to uncover a new mechanism for PI3
23 n three syngeneic mouse embryonic stem cell (mESC) lines: htt(-/-), extended poly-Q (Htt-Q140/7), and
26 ar foundations of mouse embryonic stem cell (mESC) self-renewal by applying a proven Bayesian network
28 edium-throughput murine embryonic stem cell (mESC)-based high-content screening of 17000 small molecu
30 fferentiation of mouse embryonic stem cells (mESC) into neural lineages, we compared control and ERbe
34 on approaches in mouse embryonic stem cells (mESCs) and deep sequencing of rRNA intermediates, we inv
36 unction study in mouse embryonic stem cells (mESCs) and identified 20 lincRNAs involved in the mainte
37 ldehyde prefixed mouse embryonic stem cells (mESCs) and investigated loop domains (median size of 200
41 ly reported that mouse embryonic stem cells (mESCs) are deficient in expressing type I interferons (I
43 opmental stages, mouse embryonic stem cells (mESCs) are resistant to cell fate conversion induced by
44 We have measured mouse embryonic stem cells (mESCs) at different states during differentiation (t=0h,
45 ipotent state of mouse embryonic stem cells (mESCs) by enabling LIF-dependent STAT3 phosphorylation,
46 re, we show that mouse embryonic stem cells (mESCs) can be coaxed to robustly undergo fundamental ste
47 ion of Nup153 in mouse embryonic stem cells (mESCs) causes the derepression of developmental genes an
53 Studies with mouse embryonic stem cells (mESCs) demonstrated an increase in overall beta(1,3)gala
58 DNMT3L-deficient mouse embryonic stem cells (mESCs) exhibit downregulation of DNMT3A, especially DNMT
59 that pluripotent mouse embryonic stem cells (mESCs) form aggregates that upon embedding in an extrace
60 fferentiation of mouse embryonic stem cells (mESCs) generates a population with many of the propertie
62 embryos and from mouse embryonic stem cells (mESCs) have primarily been studied within a cell populat
64 cient to convert mouse embryonic stem cells (mESCs) into 2-cell-embryo-like ('2C-like') cells, measur
65 terconversion of mouse embryonic stem cells (mESCs) is a valuable in vitro model for early embryonic
66 A methylation in mouse embryonic stem cells (mESCs) lacking the de novo DNA methyltransferases (Dnmts
67 differentiating mouse embryonic stem cells (mESCs) leads to a surprisingly restricted defect in cran
68 t3/4 (Pou5f1) in mouse embryonic stem cells (mESCs) maintained under standard culture conditions to g
69 pluripotency in mouse embryonic stem cells (mESCs) relies on the activity of a transcriptional netwo
73 nce of Mettl5 in mouse embryonic stem cells (mESCs) results in a decrease in global translation rate,
74 e-knockout (TKO) mouse embryonic stem cells (mESCs) reveal that Dnmt3b3 prefers Dnmt3b2 over Dnmt3a2
75 apping of 5fC in mouse embryonic stem cells (mESCs) reveals that 5fC preferentially occurs at poised
76 d datasets from murine embryonic stem cells (mESCs) to identify insulated neighborhoods that confine
77 gene editing in mouse embryonic stem cells (mESCs) to produce mice with targeted gene disruptions an
78 The ability of mouse embryonic stem cells (mESCs) to self-renew or differentiate into various cell
80 instability in murine embryonic stem cells (mESCs) via DNA hypomethylation at pluripotency-factor pr
81 pluripotency of mouse embryonic stem cells (mESCs) was extracted from several ChIP-Seq and knockdown
83 fferentiation of mouse embryonic stem cells (mESCs), and is particularly high in the promoter regions
84 OG expression in mouse embryonic stem cells (mESCs), and to dissect the lineage potential of mESCs at
86 of Brca2(cko/ko) mouse embryonic stem cells (mESCs), carrying a null (ko) and a conditional (cko) all
89 re, we show that mouse embryonic stem cells (mESCs), either lacking Tet3 alone or with triple deficie
91 ansduce, such as mouse embryonic stem cells (mESCs), human ESCs (hESCs), and induced pluripotent stem
92 3) substrates in mouse embryonic stem cells (mESCs), providing a broad profile of GSK-3 activity and
94 plantation embryos and embryonic stem cells (mESCs), where loss of PRDM10 results in severe cell grow
96 nal regulator of mouse embryonic stem cells (mESCs), Yin-yang 2 (YY2), that is controlled by the tran
112 e fabricated by encapsulating pure mESC-CMs, mESC-CMs + adult CFs, or mESC-CMs + fetal CFs in fibrin-
113 r efficient derivation of germline-competent mESCs from any mouse strain, including strains previousl
114 nhancing Brf1 expression does not compromise mESC pluripotency but does preferentially regulate mesen
115 then integrated these data into a consensus mESC functional relationship network focused on biologic
116 rated that STAT3 activation and consequently mESC fate were manipulable by flow rate, position in the
118 ing of the regulatory topology that controls mESC fate decisions as well as to develop robust directe
121 DNA methylation analysis of DNMT3L-deficient mESCs reveals hypomethylation at many DNMT3A target regi
123 e that growth inhibition in PRDM10-deficient mESCs is in part mediated through EIF3B-dependent effect
125 Epistasis experiments with Tdg-deficient mESCs show no involvement of epigenetic DNA demethylatio
127 scription is up-regulated in differentiating mESCs and that chemical inhibition of beta-catenin/TCF1
129 expression dynamics of retinoic acid driven mESC differentiation from pluripotency to lineage commit
132 The results suggest that Icaritin enhances mESCs self-renewal by regulating cell cycle machinery an
136 NANOG fluctuations provide opportunities for mESCs to explore multiple lineage options, modulating th
139 ingle cell gene expression measurements from mESCs cultured in serum/LIF or serum-free 2i/LIF conditi
141 medium or threonine dehydrogenase (Tdh) from mESCs decreased accumulation of SAM and decreased trimet
144 fluorescence microscopy of intact H1DeltaTKO mESC demonstrated both a loss of nucleolar RNA content a
146 extensive metabolic aberrations in htt(-/-) mESCs, including (i) complete failure of ATP production
148 Gli2 protein was heterogeneously detected in mESC nuclei by immunofluorescence microscopy and this re
151 y, the functions of the affected proteins in mESC closely overlapped with those of the human T cell n
152 ssive epigenetic systems play minor roles in mESC self-renewal and naive ground state establishment b
153 a complex interplay between Tet1 and Tet2 in mESC, and to distinct roles for these two proteins in re
159 erting methionine to S-adenosylmethionine in mESCs, methionine adenosyltransferase 2a (MAT2a), is und
163 the presence of two active X chromosomes in mESCs prevents exit from pluripotency by blocking MAPK s
164 Taken together, a deletion of Cited2 in mESCs results in abnormal mitochondrial morphology and i
167 eveals that it mediates different effects in mESCs depending on its receptor dosage, opening perspect
173 scriptional activity of Oct3/4 fluctuates in mESCs and that Oct3/4 plays an essential role in sustain
174 nisms associated with E-cadherin function in mESCs is compounded by the difficulty in delineating the
175 the effects of type I IFNs are functional in mESCs; however, these mechanisms may not yet be fully de
180 ngly, these loci are enriched for H3K9me3 in mESCs, implicating this mark in DNA methylation homeosta
181 MSL is the main HAT acetylating H4K16 in mESCs, is enriched at many mESC-specific and bivalent ge
183 lf2 expression can replace Mek inhibition in mESCs, allowing the culture of Klf2-null mESCs under Gsk
184 he metabolism of glucose was investigated in mESCs, which contained a deletion in the gene for Cited2
186 can induce dsRNA-activated protein kinase in mESCs, and this activation resulted in a strong inhibiti
190 omotes the persistence of DNA methylation in mESCs, likely reflecting one mechanism by which DNA meth
191 iated crosstalk between lncRNAs and mRNA, in mESCs, is thus surprisingly prevalent, conserved in mamm
193 pathway showed unique expression profiles in mESCs and validated this observation by RT-PCR analysis.
196 In contrast, mFast is nuclear retained in mESCs, and its processing is suppressed by the splicing
197 C, or NC2 by anchor away in yeast or RNAi in mESCs leads to near-identical transcriptome phenotypes,
198 to keep a subset of bivalent genes silent in mESCs, while developmental genes require MSL for express
199 ted sequencing of 295 dCas9 binding sites in mESCs transfected with catalytically active Cas9 identif
200 transition from Lewis(x)-type structures in mESCs to sialylated Galbeta1,3GalNAc-type glycans on dif
204 ating a transgenic system we exhibit that in mESCs, the pluripotency master regulator Oct4, counterac
205 tion, contrary to a previous report that, in mESCs, DNMT3L regulates DNA methylation positively or ne
209 chastic NANOG fluctuations are widespread in mESCs, with essentially all expressing cells showing flu
211 mouse embryonic stem cell cultures (InDelphi-mESC) is able to accurately predict CRISPR/Cas9 gene edi
216 the monolayer-based differentiation method, mESCs can be directed to generate specific deep-layer co
218 n-regulated gene in Zbtb24 homozygous mutant mESCs, which can be restored by ectopic ZBTB24 expressio
219 nctions of DGCR8, we complemented the mutant mESCs with a phosphomutant DGCR8, which restored microRN
220 mental potential of low-NANOG and high-NANOG mESCs, grown in different conditions, and confirm that m
222 STAT3 phosphorylation, with E-cadherin null mESCs exhibiting over 3000 gene transcript alterations a
226 udy, we assembled an extensive compendium of mESC data: approximately 2.2 million data points, collec
227 vely, our studies show that 3D co-culture of mESC-CMs with embryonic CFs is superior to co-culture wi
228 g NKG2D in vitro resulted in less killing of mESC by allogeneic NK cells, indicating NKG2D is a likel
231 we conclude that YY2 is a major regulator of mESC self-renewal and lineage commitment and document a
232 Here, we report that small aggregates of mESCs, of about 300 cells, self-organise into polarised
233 triggered in three-dimensional aggregates of mESCs, the population self-organizes macroscopically and
234 data support the conclusion that analysis of mESCs in the hours/days immediately following efficient
235 h adherent and three-dimensional cultures of mESCs to probe the establishment and maintenance of NMps
249 il the surprising morphogenetic potential of mESCs to execute key aspects of organogenesis through th
250 ent unique and uncharacterized properties of mESCs and are important for understanding innate immunit
251 a/beta and Mek1/2 to sustain self-renewal of mESCs in combination with leukaemia inhibitory factor an
253 ere, we report single cell RNA-sequencing of mESCs cultured in three different conditions: serum, 2i,
259 with DNA methylation heterogeneity, p53(-/-) mESCs display increased cellular heterogeneity both in t
260 lation imbalance in p53-deficient (p53(-/-)) mESCs is the result of augmented overall DNA methylation
261 e not present in 2i ground-state pluripotent mESCs but appear upon their further development into pri
263 ole of paracrine signaling, we cultured pure mESC-CMs within miniature tissue "micro-patches" supplem
264 atches were fabricated by encapsulating pure mESC-CMs, mESC-CMs + adult CFs, or mESC-CMs + fetal CFs
266 YY2 plays a critical role in regulating mESC functions through control of key pluripotency facto
267 t that beta-catenin's function in regulating mESCs is highly context specific and that its interactio
273 nd pluripotency gene repression in Tert(-/-) mESCs but not wild-type mESCs, whereas inhibition of H3K
274 erase reverse transcriptase null (Tert(-/-)) mESCs exhibit genome-wide alterations in chromatin acces
276 fferent developmental stages and showed that mESC-derived CMs are phenotypically similar to embryo-de
278 wn in different conditions, and confirm that mESCs are more susceptible to enter differentiation at t
279 force microscopy (AFM), we demonstrate that mESCs lacking Cltc display higher Young's modulus, indic
281 of wild-type are not pathogenic, given that mESCs are fully viable and resistant to DNA-damaging age
290 ization signal, has very low activity in TKO mESCs, indicating that an accessory protein is absolutel
291 Proteomic profiling of purified wild-type mESC nucleoli identified a total of 613 proteins, only ~
292 extended poly-Q (Htt-Q140/7), and wild-type mESCs (Htt-Q7/7) using untargeted metabolite profiling.
293 ression in Tert(-/-) mESCs but not wild-type mESCs, whereas inhibition of H3K27me3 demethylation led
295 that fluctuations have similar kinetics when mESCs are cultured in standard conditions (serum plus le