ライフサイエンスコーパス: manually

1 In OCT scans, HRF and HRS were counted manually.

2 comparable to or better than those achieved manually.

3 Both kidneys and liver were also segmented manually.

4 d with the development of ROP were collected manually.

5 ility or behaviour are difficult to quantify manually.

6 nts, (89)Zr radiolabeling is still performed manually.

7 ferent length scales are largely carried out manually.

8 , glycan spectra are predominantly sequenced manually.

9 computer programs and available software, or manually.

10 omes) for which MS/MS spectra were annotated manually.

11 se tasks may be labor intensive if performed manually.

12 rrection for patient body motion was applied manually.

13 d and classified individual seals in imagery manually.

14 wheat community was to perform this process manually.

15 onships between stimulus and brain responses manually.

16 oth; some tools require adjusting parameters manually.

17 Volunteers ventilated manually a lung simulator for 6 hours.

18 n ISA-Tab format on users, who have to do it manually, a process that is time consuming and prone to

19 point of head motion, which was followed by manually adding additional motion time points.

20 experimental conditions without the need to manually adjust segmentation parameters.

21 accuracy comparable to currently available, manually administered assessments.

22 It can be daunting to manually analyze and interpret such large datasets witho

23 enance and frequency of each annotation from manually and computationally created databases and clust

24 Hippocampal volumes were defined manually and normalized for total intracranial volume.

25 Color fundus photographs were graded manually and OCT scans underwent automated image analyse

26 Results: Manually and semiautomatically derived PSMA metrics were

27 ed using layer-specific angle data collected manually and via high-throughput phenotyping strategies.

28 Tumor volumes were delineated manually, and the input function was image-derived (abdo

29 Moreover, three dentists are also invited to manually annotate the test dataset (independently), whic

30 Kyriacou et al. manually annotated a subset of our recordings and report

31 om an ongoing study (Ethics Ref 13/SC/0250), manually annotated and used for model training and evalu

32 he arteries and veins on their CT scans were manually annotated by five experienced observers.

33 Manually annotated data is key to developing text-mining

34 ular architecture, and was evaluated using a manually annotated dataset of the University of Pittsbur

35 A strict evaluation of SemRep on our manually annotated dataset yields 0.55 precision, 0.34 r

36 ice have been hindered by the need for large manually annotated datasets.

37 ions of both control and damaged rat ONs and manually annotated for axon count and location.

38 in polarity, glycosylation, and alkylation, manually annotated for substance classes, the relative m

39 38 559 post-translational modifications, as manually annotated from 48 114 publications.

40 ecords for 1 598 688 biological interactions manually annotated from 55 809 publications for 71 speci

41 op OrgaQuant, we created a unique dataset of manually annotated human intestinal organoid images with

42 Eleven intracranial structures were manually annotated on the axial oblique series.

43 rms of pixel-by-pixel evaluation compared to manually annotated regions of invasive ductal carcinoma.

44 relations, the hypothesis is validated using manually annotated relations appearing in a thesaurus, a

45 ting atlases are limited to small numbers of manually annotated samples from a single cerebral hemisp

46 sults are as good or potentially better than manually annotated stages by cancer pathologists.

47 In one evaluation, we use a manually annotated test collection and perform a compreh

48 drugs and well-characterized tool compounds manually annotated to 218 unique MoAs, and we profiled e

49 t of 1000 reports were randomly selected and manually annotated to train and validate a machine learn

50 The corpus was manually annotated with coreference relations, including

51 SIGNOR 2.0 now stores almost 23 000 manually-annotated causal relationships between proteins

52 Accurate NER systems require task-specific, manually-annotated datasets, which are expensive to deve

53 AGES program, which isolates, sequences, and manually annotates hundreds of phage genomes each year.

54 nematic assessment of hand movements done by manually annotating frames.

55 On the other hand, manually annotating single cell clusters by examining th

56 s is typically performed on single pixels or manually assigned regions of interest (ROIs).

57 MR elastograms were analyzed manually at two reading centers, and using a new automat

58 However, manually attaching substrates with recently settled cora

59 Risk classification using manually augmented array calling resulted in four out of

60 The techniques are 99% concordant using manually augmented calling, and 98% concordant using an

61 We also compared, where possible, the manually built logical models corresponding to a molecul

62 artificial agents, instead of being designed manually by AI researchers, might learn portions of thei

63 Each entry of ADPriboDB is annotated manually by at least two independent curators from the l

64 al settings, border delineation is performed manually by dermatologists.

65 a customized automated tool (n = 11 270) or manually by individual readers (n = 9104).

66 e) were collected retrospectively and graded manually by six trained readers using the United States

67 tion during operation is typically performed manually by technicians.

68 t, optimize for manufacturing processes, and manually calculate and program the valve sequences that

69 isk for clinical deterioration has relied on manually calculated scores.

70 The automated approach was validated using manually categorised grants data from funders based in t

71 A portion containing 521 spectra was manually checked confirming that Glycoforest annotated a

72 resolution 7 T time-of-flight angiography we manually classified hippocampal vascularization patterns

73 Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled

74 ate modeling of ligand activity profiles, we manually collected and annotated NRs interaction data (p

75 Both ESP and manually collected samples provided similar information

76 ly regulated in reality, the FBA models were manually constrained in a step-wise manner.

77 validated, with permission, against Google's manually-constructed knowledge graph and against expert

78 All suspected tumor sites were manually contoured on coregistered CT and PET images, an

79 threshold volumes (MTVt, TLGt) and from the manually contoured soft-tissue volumes.

80 (instructed to act in three prescribed ways) manually controlled two systems (1st and 2nd order) subj

81 nal layer and fluid boundary lines that were manually corrected for assessment of change in EZ parame

82 For the diagnosis of cancer, manually counting nuclei on massive histopathological im

83 nd stomata density is generally estimated by manually counting stomata.

84 outperforms traditional approaches based on manually crafted features.

85 all the systems satisfying our criterion, we manually create single layer systems and calculate their

86 omated algorithm (OpenCyto framework) with a manually created hierarchically cell gating template imp

87 ic models from the homology matrix; and (iv) manually curate draft models.

88 In addition to naming genomic loci we manually curate genes into family sets based on shared c

89 We manually curate molecular details of pathways in these d

90 Here, we manually curated 112 datasets of phospho-enriched protei

91 In this study, we manually curated 1235 SVs, which can ultimately be used

92 ionship between neuropeptides and cancer, we manually curated a total of 127 human neuropeptide genes

93 We evaluated MirCure on a set of manually curated animal and plant miRNAs and demonstrate

94 We further provide a manually curated benchmark dataset that can be used for

95 This version now contains manually curated binding data for 7085 mutations, an inc

96 targets drawn from the DrugBank database and manually curated bioactive compounds reported in the lit

97 Experiments on five manually curated collections of TRs have shown that Dot2

98 tes the utility of integrative analysis of a manually curated compendium of genome-wide protein bindi

99 We also report a 46% increase in CTD manually curated content, which when integrated with oth

100 gn readings fell into realistic ranges, with manually curated data less likely to contain implausible

101 The Genomes Online Database (GOLD) is a manually curated data management system that catalogs se

102 homa (SMZL) and to provide a well-annotated, manually curated database of high-confidence somatic mut

103 s System Disease NcRNAome Atlas (NSDNA) is a manually curated database that provides comprehensive ex

104 d achieves prediction accuracies of 90% on a manually curated database.

105 Benchmarks against manually curated databases of TF-gene interactions show

106 nd the area under the curve (AUC) metrics on manually curated datasets confirmed the excellent discri

107 We benchmark these methods using 100 manually curated datasets from 16S and whole metagenome

108 a new reference genome for P. malariae and a manually curated draft P. o. curtisi genome, we are now

109 near motif (ELM) resource is a repository of manually curated experimentally validated short linear m

110 ulk-based functional analysis tools that use manually curated footprint gene sets can be applied to s

111 and 3523 individual protein motif instances manually curated from 3467 scientific publications.

112 ntains 63 human and yeast proteins that were manually curated from literature, including descriptions

113 database contains massive datasets that were manually curated from NCBI GEO and the exRNA Atlas, incl

114 emical-disease and gene-disease interactions manually curated from the literature) are integrated wit

115 Using our manually curated genes and miRNAs with evidence in CP in

116 Of manually curated genomes, 22 (18 are complete), ranging

117 ,328 bp continuous gap free sequence with 35 manually curated genomic loci of which 23 were considere

118 iction results are compared against lists of manually curated hinge residues, and the results suggest

119 litate this we have developed ImmunoGlobe, a manually curated intercellular immune interaction networ

120 to 11,676 coding sequences (CDS), which were manually curated into 116 different protein families.

121 rofile hidden Markov models constructed from manually curated IS elements.

122 ion of 78-94% (measured relative to existing manually curated knowledge bases).

123 e the performance against a gold standard of manually curated labels.

124 Finally, using a manually curated list of viruses and natural and symptom

125 We built a database of 538,213 manually curated phage protein sequences that we split i

126 orithm and a fitness function trained on the manually curated PPINs, we show that IIN topology can be

127 While other available methods require a manually curated reference structure, ShaKer predicts re

128 e version 4.8 (September 2019) contains 3454 manually curated references, and provides information on

129 veral commercial platforms provide large and manually curated regulatory networks and functionality t

130 The most established ones are (1) manually curated repositories, (2) interactions derived

131 The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose somatic

132 ehensive Antibiotic Resistance Database is a manually curated resource containing high quality refere

133 quence identity and sequence coverage to the manually curated sequences than the original RepeatModel

134 robust linear regression methodology using a manually curated set of 6,279 patients' longitudinal mea

135 with diverse TE landscapes and high-quality, manually curated TE libraries: Drosophila melanogaster (

136 We have manually curated the largest relational database of dend

137 Thirty-five genomes were manually curated to completion (circular and no gaps).

138 We manually curated to completion 15 distinct Lak phage gen

139 tures, and the first reported sequences were manually curated to completion.

140 The captured data was manually curated to preserve data integrity and accuracy

141 we have systematically analyzed over 10,000 manually curated toxin sequences using sequence clusteri

142 7 challenge test data set, consisting of 200 manually curated US FDA drug labels.

143 Currently, such benchmarking features are manually curated with custom scripts in a non-standardiz

144 When manually curated, 87% of these additional flagged featur

145 Study data provided to CEBS are manually curated, accessioned and subject to quality ass

146 ic model (GEM) of strain TFA, which has been manually curated, includes information on 743 genes, 111

147 In total 20 models were manually curated.

148 etaGxData package compendium, which includes manually-curated and standardized clinical, pathological

149 Gephebase is a manually-curated database compiling our accumulated know

150 e amino acids, as compared to more classical manually-curated encoding strategies, has not been syste

151 Using a manually-curated set of metabolic interactions between m

152 yping, which provides a better separation of manually defined eye colour categories.

153 Thirty-eight CNNs were trained on subsets of manually defined ground-truth regions from >700 leaves r

154 Two investigators manually defined regions of interest in the vertebrae.

155 ans were extracted from the PET images using manually defined regions of interest.

156 carry information capable of accounting for manually defined task features and task domains such as

157 We manually delineated atrophic lesions on color fundus pho

158 Two nuclear medicine experts manually delineated foci with increased (18)F-FDG uptake

159 We manually delineated GA on 1654 fundus photographs of 365

160 The CRVT location was manually delineated in separate projection images of the

161 Cervical spine lesions were manually delineated on T2- and T2*-weighted axial and sa

162 olume composed of 256 coronal slices with 71 manually delineated structures and substructures.

163 We were able to reproduce previous manually derived histological findings in goat models fo

164 Manually determined composite Ki67 scores from the CLARI

165 We manually dissected kidney tubules from rat kidneys and s

166 Through removal of the need to manually divide a data set into many time windows and an

167 workflow for this type of data is based upon manually dividing the total ion chromatogram (TIC) into

168 or readers to verify reproducibility without manually downloading and rerunning code and can provide

169 e the engineer to research the architecture, manually draft the device layout, optimize for manufactu

170 landular tissue; contrast-to-noise ratio) by manually drawing regions of interest within the phantoms

171 he organs, when the volumes of interest were manually drawn by the investigators.

172 plate, and (ii) a surface atlas derived from manually drawn epicardial and endocardial surface contou

173 The KinoViewer is based on a manually drawn SVG, which is utilized with D3.js to crea

174 Regions of interest were manually drawn to calculate SUVs.

175 lized ADC measures were performed, including manually drawn whole-lesion and hotspot regions of inter

176 ed with Epiviz that alleviates the burden of manually executing data analysis required to test biolog

177 sure and ventilation rate (breaths/min) were manually extracted from arterial line and capnogram wave

178 Machine learning applied to features manually extracted from readily accessible videos (e.g.,

179 We combined manually extracted information from published literature

180 s reported in EHR analysis studies (only 10, manually extracted); and by testing their similarity.

181 Manually filtering and comparing lists of DEEs across mu

182 tion and dimensions are currently determined manually from 3D CT images by medical experts to avoid d

183 cytioTB (STB), and migratoryTB (MTB), picked manually from cultured embryos dissociated with trypsin

184 o-demographic characteristics were extracted manually from historical civil registers for 5,671 child

185 ple tandem repeats and can only be assembled manually from long error-prone reads.

186 ventricle regions of interest were generated manually from MRI data.

187 coefficients of the automatic pipeline with manually generated results were excellent and better tha

188 Retinal images were manually graded following a standard national protocol f

189 We extracted mean RNFL thickness and SS and manually graded scans for artifact.

190 t commercial category of oil quality in both manually harvested olives and in mechanically harvested

191 Brain metastases were manually identified and contoured by neuroradiologists a

192 Background Brain metastases are manually identified during stereotactic radiosurgery (SR

193 logically meaningful cell clusters that were manually identified in previously published single cell

194 Traditionally, the annotation was done manually imposing constraints in reproducibility and aut

195 d cone outer segment tips (COST) was counted manually in AO-OCT images.

196 udents' evaluations and scripts are assessed manually in Ethiopia.

197 zzy locally adaptive Bayesian algorithm, and manually in the low-dose CT images.

198 zzy locally adaptive Bayesian algorithm, and manually in the low-dose CT images.

199 successful, except for IKZF1 which should be manually inspected.

200 This is currently accomplished by manually inspecting and inferring the biological consequ

201 uencing (ChIP-seq) remains a tedious (>2 d), manually intensive, low-sensitivity and low-throughput a

202 To manually interpret and identify all of the constituent p

203 Flagging and removing such false peaks manually is a time-consuming task and prone to human err

204 RGCs were manually isolated based either upon fluorescence or phys

205 About 500 single fiber cells, manually isolated from a 2-day-old transgenic lens were

206 edema, and the contrast-enhancing tumor-were manually labeled by experienced radiologists.

207 om 248 patients, yielding over 3000 swallows manually labeled by experienced speech language patholog

208 d automated results that agreed favorably to manually labeled counterparts.

209 provide an evaluation of its accuracy using manually labeled data.

210 r bias, that is, without the prerequisite of manually labeled training data.

211 eal datasets with ground truth annotation or manually labeling, SynQuant was demonstrated to outperfo

212 protocols and techniques are time-consuming, manually laborious and often expensive due to the excess

213 evant gene sets, which are currently curated manually, limiting their availability and accuracy in ma

214 cer phenotypes is currently mostly performed manually, making it difficult to correlate phenotypic da

215 ftware packages with complex dependencies or manually manipulate data for analysis and interpretation

216 Manually measured cross-sectional areas are most commonl

217 e radiologist calculated the tumour volume - manually measuring tumour length (L), width (W), and hei

218 In Experiment 1, manually-obtained cell counts were compared to those det

219 ll atrophic and border regions were selected manually on the FAF scans.

220 simple, negative pressure-driven device with manually operated magnetic valves was developed and the

221 kling, pigmented spots) were assessed either manually or digitally.

222 he majority of currently implemented methods manually or semi-automatically segment out the region of

223 ria as bright spots that were easily counted manually or using an automated script for user-independe

224 teractions is essential, yet often performed manually or using limited enumeration employing simple i

225 either automatically with the Masimo Rad-97, manually, or both, and measured SpO(2) with the Rad-97.

226 valent of 10 glass slides of embryos mounted manually, our microfluidic approach greatly increases th

227 The infarcts were manually outlined and transformed into stereotaxic space

228 The drusen-resolved regions were manually outlined.

229 from prior clinical ECG and echocardiograms, manually over-read to evaluate ARVC diagnostic criteria,

230 ng in length and internal diameter have been manually packed with the composite material prepared fro

231 The striatum was manually parcellated into its associative and sensorimot

232 nt consensus for gene cloning in wheat is to manually perform many steps in a long bioinformatics pip

233 Currently, MeSH indexing is manually performed by human experts.

234 Additionally, the whole procedure, manually performed in open environment, often suffers fr

235 on a user-supplied concentration value or by manually perturbing the concentration value until the is

236 One sample was made by manually placing a known amount of OGSR particles onto a

237 nate eluent systems are possible compared to manually prepared carbonate-bicarbonate eluents and with

238 of their biological features compared to the manually processed colonies using standard molecular app

239 Reference measurements from 1525 manually processed T2 maps and 1525 ECV maps (from 305 p

240 ., 10 min long) produce data that usually is manually processed.

241 However, manually processing acquired UHPLC-DAD-HRAM/MS(n) data f

242 s by DPPH and FRAP) compared to endocarp and manually-produced bran flours.

243 Currently, the missing text is manually reconstructed by experts.

244 Here, we develop a manually reconstructed genome-scale model (GEM-PRO) of m

245 The network was manually reconstructed through extensive biocuration to

246 by at least 50-fold eliminating the need to manually refill reservoirs while improving droplet dispe

247 Operators should inspect and manually refine OCT retinal layer segmentation when asse

248 In out-of-sample tests on manually replicated papers from diverse disciplines and

249 sourcing app-SVCurator-to help GIAB curators manually review large indels and SVs within the human ge

250 nohistochemistry experiment, computation and manually reviewed evidences.

251 Comments were manually reviewed to assess for relevance to elective su

252 oduces more potential hypotheses than can be manually reviewed, making automatically ranking these hy

253 death registry, and death certificates were manually reviewed.

254 e death registry and death certificates were manually reviewed.

255 ference lists of the identified studies were manually reviewed.

256 and 20% of cases with related diagnoses were manually reviewed.

257 Relative to a stitching performed manually, Rhapso increased the data processing speed and

258 generated from inanimate objects, such as by manually rubbing a paper tissue contaminated with influe

259 These were then manually sampled by an operator (semiautomatic analysis)

260 Seven source organs were defined manually, scaled to a sex-specific reference, and reside

261 The results support manually scored L3 testing in routine practice.

262 nce lists of the final included studies were manually screened, yielding no additional publications.

263 and reference lists of included studies were manually searched for relevant articles.

264 Lesions were manually segmented by one breast radiologist.

265 tic segmentation results or direct import of manually segmented cells.

266 s (median gestational age = 27.9 weeks) were manually segmented for CBH quantification and location.

267 y the pairwise comparisons of MERs using 106 manually segmented ground-truth cells with different siz

268 ned or trained from scratch using additional manually segmented images.

269 Intra-axial brain lesions were manually segmented in patients with MRE seen at our inst

270 N previously trained and tested using 11 550 manually segmented native T1-weighted images was used to

271 tinal microvascular abnormality [IRMA]) were manually segmented on stereographic projected UWF.

272 The lungs were manually segmented on the ventilation-weighted images to

273 g its performance to four CNNs trained using manually segmented T2-weighted and postcontrast T1-weigh

274 Primary tumour was semi-automatically or manually segmented with a threshold standardised uptake

275 Slices in the average brain image were then manually segmented, individually and bilaterally, on the

276 3.0-T MRI system between 2015 and 2016 were manually segmented.

277 Beans were manually segregated, demonstrating an increase by up to

278 st current methods rely on features that are manually selected based on knowledge about protein struc

279 We mimicked an economic 'crash', manually severing part of the fungal network (Rhizophagu

280 he release of eggs will eliminate burdens of manually sexing and sterilizing males, thereby reducing

281 While large microplastic particles can be manually sorted out and verified with chemical analysis,

282 Experimental adhesives were manually synthesized by incorporating 20% (v/v) of n-TiO

283 g dNAAT is generally laborious and performed manually, thus creating the need for a simple sample pre

284 ng a microscope and a fourth pathologist via manually ticking off each cell, the latter of which was

285 he automated approach correlated highly with manually traced TKV and TLV (intraclass correlation coef

286 We validate the method against manually-traced ground-truth networks, and calibrate the

287 nsylvanicus by quadrupling nest space and by manually tracking 6.9 million ant locations and over 320

288 t almost impossible for human researchers to manually uncover all the peaks.

289 0 unique N-glycopeptides were identified and manually validated by de novo glycopeptide sequencing, o

290 In a national Veterans Affairs cohort with manually validated data, surgical specialty (cardiac, or

291 whether nurses are capable of appropriately manually ventilating patients for 6 hours.

292 tes more potential new knowledge than can be manually verified and another form of selection is requi

293 n was transferred and these gene models were manually verified and improved.

294 reducing the quantity of hidden knowledge to manually verify.

295 smear analysis, which is currently performed manually via bright-field microscopy, and toward the dev

296 vides a one-click option for adding articles manually via digital object identifier or PubMed ID.

297 spectra have to be rechecked by the operator manually, which is very time-consuming.

298 ld system, which can be assembled and scaled manually with ease.

299 raditional tumor burden estimation performed manually with H&E histological slices with a semi-automa

300 h inexpensive plastic materials and operated manually without requiring electrical power and extensiv