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1 ng global de-methylation, and then become re-methylated.
2 active site, but too far away from SAM to be methylated.
3 T3-preferred CWG sites are more likely to be methylated.
4 -associated CpG island, are near-universally methylated.
5 g sites in repeat regions which are normally methylated.
7 DNA, which illustrated that YTHDC1 binds the methylated adenine in a single-stranded region flanked b
8 s its role in conferring specificity for the methylated adenines, whereas an extended basic surface p
9 identified CpGs that remained differentially methylated after urogenital development and used the mos
19 ed with the oxidation of benzene and several methylated and methoxylated analogs, namely, toluene, th
20 ne-phosphate-guanine sites, which are highly methylated and result in lower KIF3A expression, and thi
21 found intact, methylated, sulfated and both methylated and sulfated quercetin sophoroside in the pla
23 t of TFBSs and designed new tools to compare methylated and unmethylated structural profiles of TFs a
24 undant, the conserved methyltransferase Ppm1 methylates and alters the activity of the catalytic subu
25 Ts), which catalyze the formation of various methylated arginine products on a wide variety of cellul
28 ycle, particularly in rice paddy soils where methylated As, generated microbially, is translocated in
30 CPs wrapped with either wild-type DNA or DNA methylated at all 26 CpG sites highlight the utility of
33 rica serovar Typhimurium, FliC and FljB, are methylated at surface-exposed lysine residues by FliB.
34 or coronaviruses, RNA cap structure is first methylated at the guanine-N-7 (G-N-7) position by nonstr
35 membranes of two extensively studied Hg(II) methylating bacteria: Geobacter sulfurreducens PCA and D
36 to very long read lengths, ability to detect methylated bases, and its real-time sequencing methodolo
39 sis of new conformationally restrained boron-methylated BODIPY photocages that absorb light strongly
40 BREX+ cells overproducing Ocr have partially methylated BREX sites, their viability is unaffected.
41 sion protein, DNA in proximity to the POI is methylated by Dam and can be selectively digested and am
43 We also found that fetal-enhancer regions methylated by Dnmt3a and Dnmt3b were enriched for kidney
44 biouptake or the ability of Hg(II) to become methylated by HgcAB and should be further explored in th
47 neutral and alkaline pH environments and can methylate cap analogs (GpppA and GpppG) and single-nucle
48 ividual viral genes as well as synthesize 5' methylated cap and 3' poly(A) tail of the transcribed vi
49 ructures for nsp16-nsp10 in complex with the methylated Cap-0 analog m(7)GpppA and either SAM or SAH.
50 -nsp10 2'-O-methyltransferase complex, which methylates Cap-0 viral mRNAs to improve viral protein tr
54 mosum grown on l-carnitine, but not lactate, methylated cob-(I)alamin or tetrahydrofolate using l-car
56 ubstrates as well as the high MOG rates from methylated compounds indicated that methylotrophic metha
57 this regard, the triphosphate forms of 2'-C-methylated compounds, including sofosbuvir, approved for
58 s through the utilization of non-competitive methylated compounds; however, the occurrence and import
64 hen 1p19q co-deletion was absent, numbers of methylated CpG sites were higher in the presence of IDH-
68 identified 956 AR-associated differentially methylated CpGs in upper airway mucosal cells at age 6 y
70 17 and identified some novel differentially methylated CpGs that are significantly associated with B
74 ward realizing an assay for the detection of methylated ctDNA in plasma for early cancer detection in
75 ety that is attached to the terminal carboxy-methylated cysteine, in addition to electrostatic intera
77 nscription model shows that both mono- or di-methylated cytosine bases could specify the C:T pair and
79 ated with 242, 1, 592, and 17 differentially methylated cytosine-phosphate-guanine (dmCpG) sites (fal
80 mammalian DNA is the product of oxidation of methylated cytosines (5mC) by Ten-Eleven-Translocation (
84 (A) tracts that rotationally position highly methylated cytosines relative to phased nucleosomes.
86 termediates, we synthesized a variety of C4'-methylated d-ribose and l-lyxose-configured uridine deri
87 Pathway analysis indicated that aberrantly methylated DEGs mainly associated with the P13K-AKT sign
89 horts profile datasets to ascertain aberrant methylated-differentially expressed genes and pathways a
90 ze, we have identified six feasible aberrant methylated-differentially expressed genes and pathways i
91 esent study, we detected and quantified 16-O-methylated diterpenes (16-OMD) in 248 samples of green C
92 reviously unknown pathway intermediate was a methylated diunsaturated fatty acid, (10E,12E)-11-methyl
94 ckdown resulted in over 8,000 differentially methylated (DM) CpGs, treatment with the ERK1/2-selectiv
96 tegrative network analysis of differentially methylated (DMGs) and differentially expressed genes (DE
98 available methyltransferases to specifically methylate DNA at a desired number of sites that serve as
103 TgDelta185) both alone and in complex with a methylated DNA substrate at 1.68 and 2.27 angstrom resol
108 ls prior to global de-methylation, become de-methylated during global de-methylation, and then become
116 a gross total resection (GTR), MGMT promoter-methylated gene status, unifocal disease, higher RT dose
118 identified 497 differentially expressed and methylated genes (P = 6.42e-09, hypergeometric test) enr
120 et of inflammation-associated differentially methylated genes in both AD and PSO and discuss the asso
122 omatin, and loss of EPR-1 de-represses H3K27-methylated genes without loss of H3K27 methylation.
124 dDM-dependent, involving 1380 differentially methylated genes, many within auxin-related gene pathway
127 aring two exclusively but equally CG- or CHG-methylated genomes, we show that CHG methylation acts as
128 s primary melanoma and detection in serum of methylated genomic DNA from the AGTR1 CpG island in meta
129 10 muM concentration, particularly the per-O-methylated glucosylacetophloroglucinol and the 4-glucosy
130 ccurred in body fluids mainly in the form of methylated, glucuronidated, and sulfated derivatives (in
131 its Asn(255) substituted derivatives did not methylate glutamine (another potentially methylated amin
133 l modifications at their 5' end: an inverted methylated guanosine and a unique 2'O-methylation on the
136 he Polycomb Repressive complex 2 (PRC2) that methylates H3K27, switches the gene into an active chrom
137 hat permits allosteric inhibition of PRC2 by methylated H3K36 in transcriptionally active chromatin.
139 x-protein core COMPASS subcomplex, which can methylate H3K4 and be stimulated by H2B-Ub, bound to a u
142 , our results suggest that each KMT2 complex methylates H3K4 through distinct mechanisms in which ind
143 Additionally, we identified differentially methylated H3K4me1 peaks in basal and luminal tumour sam
146 g spermiogenesis results in the retention of methylated histone H3 at the same genomic location in mo
149 -quality chromatin profiles particularly for methylated histone marks but is not optimized for H3K27a
152 ion of chromosome 11, known to be abnormally methylated in another disorder of expanded beta cell mas
154 omoters of inactive genes are differentially methylated in both syndromes while escape gene promoters
155 bsets of putative somatic enhancers that are methylated in ESCs and can be activated upon differentia
156 o show that half of the TEs that were highly methylated in gametes had already undergone CHH hypermet
158 show that KIR proximal promoters are densely methylated in less mature CD56(bright) NK cells and are
159 he majority of sequences were differentially methylated in MCF7 (cancerous) and MCF10A (non-cancerous
163 , a subset of arginine tRNA isoacceptors are methylated in the anticodon loop by the METTL2 methyltra
164 HIFs fail to bind CpG dinucleotides that are methylated in their consensus binding sequence, both in
167 , i.e. while localized in the ER, Opi3 would methylate lipid substrates located in the plasma membran
168 In conclusion, we identified and replicated methylated loci associated with MDD that are involved in
171 epresses nascent RNA transcription of highly methylated long genes in the brain through its interacti
173 ferential binding to histone H3 tails with a methylated lysine at the ninth residue, a hallmark of he
178 .4% of cytosines in Saccharina japonica were methylated mainly at CHH sites and characterized by 5-me
179 mouse DNMT3A severely impairs its ability to methylate major satellite DNA, a DNMT3A-preferred target
181 e microorganisms differ in their capacity to methylate mercury, the abundance and distribution of met
185 t, but has no overt effect on the ability to methylate minor satellite DNA, a DNMT3B-preferred target
188 Further, we found that MeCP2 binding to methylated miRNA loci halts RNA polymerase II elongation
189 cal motif of the TF and the newly discovered methylated motifs, which suggests operative recognition
193 ches, we present the single-molecule adenine methylated oligonucleosome sequencing assay (SAMOSA).
194 ESCs with three epitypes, WT, constitutively methylated, or hypomethylated, all undergo comparable mo
197 ocally demonstrated that the wild-type AMATs methylate overwhelmingly in cis, strongly suggesting tha
199 es (PLMTs) synthesize phosphatidylcholine by methylating phosphatidylethanolamine using S-adenosylmet
200 odeling factor under glucose starvation, and methylated Pontin binds Forkhead Box O 3a (FOXO3a).
201 analyses and biochemical studies reveal that methylated Pontin functions as a platform for recruiting
202 ociated arginine methyltransferase 1 (CARM1) methylates Pontin chromatin-remodeling factor under gluc
203 e mercury, the abundance and distribution of methylating populations may determine MeHg production in
204 emented linear models to test differentially methylated positions (DMPs) and the DMRcate method to id
205 ted level of 0.05, we found 6 differentially methylated positions (DMPs) for Cd; 288 and 17, respecti
206 not identify any significant differentially methylated positions (DMPs) in singleton pregnancies, in
207 has been done in associating differentially methylated positions (DMPs) to type 2 diabetes (T2D) acr
211 acetyl (MIDA) acylboronates as well as alpha-methylated potassium acyltrifluoroborates in a one-pot m
213 use of a mildly nucleophilic organoaluminium methylating reagent that preserves other electrophilic f
214 onseptic patients, 81% of the differentially methylated region-associated genes were differentially e
215 any context, but thousands of differentially methylated regions (DMRs) are identified population-wide
216 d CpG positions (DMPs) and 10 differentially methylated regions (DMRs) associated with asthma severit
218 nt establishment of imprinted differentially methylated regions (DMRs) in gametes or their maintenanc
220 phate-Guanine (CpG) sites and differentially methylated regions (DMRs) in relation to 1-y average air
221 identified 3751 CpGs and 119 differentially methylated regions (DMRs) significantly associated with
222 990 early-postpartum-specific differentially methylated regions (DMRs) were found in genes involved i
223 compared with WT, and 20 556 differentially methylated regions (DMRs) were identified by comparing t
224 scovery rate (FDR) < 0.05 and differentially methylated regions (DMRs) were identified using comb-p (
225 ably, we identify a cohort of differentially methylated regions (DMRs), most of which gain DNA methyl
227 tation sequencing (MeRIP-seq), through which methylated regions are detected as peaks in transcript c
229 ing markers (H3K9me3, H3K27me3), while hyper-methylated regions are enriched in polycomb repressive c
230 ed sites and four times fewer differentially methylated regions compared to samples from different pa
232 y expressed genes (DEGs) with differentially methylated regions encoding transcription factors and ke
233 lation but also by opening up previously CpG methylated regions for PRC2 recruitment, diluting PRC2 a
234 ghly ordered, suggesting that differentially methylated regions have unique properties that may be re
235 esults show that a network of differentially methylated regions in glucocorticoid signaling and infla
237 among ASM loci, but most ASM differentially methylated regions lack such annotations, and some are f
238 n in which MeCP2 binds broadly across highly methylated regions of DNA, but acts at transcription sta
239 ritable and novel nonparental differentially methylated regions overlapping with genes associated wit
240 ession is complex, with three differentially methylated regions regulating germline, placental and ti
241 of six chimpanzees, to detect differentially methylated regions that likely emerged in modern humans
243 n silico analysis showed that differentially methylated regions were enriched in transcription factor
245 ostly orthogonal to classical differentially methylated regions, are enriched at cell type-specific e
246 nt 15,112 high-confidence ASM differentially methylated regions, of which 1838 contain SNPs in strong
247 ables identification of novel differentially methylated regions, which we independently validate.
252 monly found in eukaryotic proteins that bind methylated RNA and is structurally unrelated to the E. c
253 of this approach by reversibly caging a 2'-O-methylated RNA aptamer as well as synthetic threose nucl
254 edict changes in m(6)A between conditions is methylated RNA immunoprecipitation sequencing (MeRIP-seq
255 ethyltransferase (G-N-7 MTase) of PEDV nsp14 methylated RNA substrates in a sequence-unspecific manne
258 example, tedizolid) and natural products-are methylated site-selectively at the most electron rich, l
261 the same patriline had twice as many shared methylated sites and four times fewer differentially met
262 of the water+H(2)O(2) extractable arsenic as methylated species, but only dimethylarsinate showed a c
265 a hemolytic phenotype versus control, while methylated spirits showed a 39.7% increase in affected p
272 g an in situ rat gut model, we found intact, methylated, sulfated and both methylated and sulfated qu
274 show that in sweet almond cultivars, highly methylated TE insertions surround a gene involved in the
276 TFs) from the JASPAR and UniPROBE databases, methylated TFBSs derived from in vitro high-throughput E
282 rotein N-terminal methyltransferases (NTMTs) methylate the alpha-N-terminal amines of proteins starti
283 eferentially bind to nucleosomes, yet cannot methylate the DNA wrapped around the nucleosome core(2),
284 tly catalyze tRNA methylation, is assumed to methylate the genome of S. japonica in the structural co
285 anscription factor complex that bound to and methylated the CAV1 promoter, leading to CAV1 expression
286 otein 16 (nsp16), in conjunction with nsp10, methylates the 5'-end of virally encoded mRNAs to mimic
287 on, and domain 3 is a methyltransferase that methylates the C-2 hydroxyl group of the terminal alpha-
289 tch from the SWI/SNF complex to EZH2 through methylating the BAF155 subunit of the SWI/SNF complex on
291 ain on same NRPS module (in cis), or does it methylate this residue on a nascent peptide tethered to
292 eucine and proline being the most frequently methylated tRNA isoacceptors, loss of m(5) C impacts the
297 in muscle biology that has been reported to methylate valosin-containing protein/p97 (VCP) and heat
298 thyltransferase assay revealed that Mettl21e methylated valosin-containing protein (Vcp/p97), a key c
300 sites were also significantly differentially methylated with allergic symptoms and shared between ast