ライフサイエンスコーパス: microbe

1 Latency has advantages for both host and microbe.

2 raits reflects the lifestyle of the specific microbe.

3 omonas putida KT2440, an emerging industrial microbe.

4 nasal passages host a distinct community of microbes.

5 bacterial genome dynamics in host-dependent microbes.

6 model framework to identify signature causal microbes.

7 ored space of smORFs within human-associated microbes.

8 are affected by cooperative or antagonistic microbes.

9 n constant communication with populations of microbes.

10 vidence of maternal transmission of selected microbes.

11 in the replication and pathogenesis of these microbes.

12 n biosynthetic capabilities possessed by few microbes.

13 er, soluble monomers that can be respired by microbes.

14 er, in both species and number of cultivable microbes.

15 tate T cell exposure to commensal/pathogenic microbes.

16 nd infants are more abundant than non-shared microbes.

17 tracellularly to inhibit the growth of other microbes.

18 well as virulence characteristics of diverse microbes.

19 ntibody, which binds pathogens and commensal microbes.

20 ngle species, but also entire communities of microbes.

21 ined and synergistic processes used by these microbes.

22 o the presence of a few species of commensal microbes.

23 with a diverse community of root-colonizing microbes.

24 o regulate adaptive T-cell responses against microbes.

25 s identifying plant-interacting, N(2)-fixing microbes.

26 ities encoded by the community's constituent microbes.

27 with algal exudates feeding coral-associated microbes.

28 al network for predicting essential genes in microbes.

29 of these neurons and their interaction with microbes.

30 l allergens, infectious parasitic worms, and microbes.

31 nst pathogens and homeostasis with commensal microbes.

32 e cells patrol the oral mucosa for infecting microbes.

33 provide a selective advantage for these soil microbes.

34 for identifying differentially abundant (DA) microbes.

35 presumably signaling the presence of harmful microbes [1].

36 Using differentially abundant microbes, a random forest classifier model was created t

37 ine plastic debris, we enriched and isolated microbes able to grow using a range of plasticizers and,

38 Microbes acclimate to changes in substrate availability

39 erial interactions from the co-occurrence of microbes across diverse microbial communities.

40 the molecular mechanisms by which commensal microbes act on hosts and arboviruses.

41 Moreover, microbe-activated monocytes induced the secretion of Th1

42 ire a better understanding of how beneficial microbes adapt to hosts.

43 evolving populations, such as those of many microbes, adaptation is driven primarily by common benef

44 In this issue of Cell Host & Microbe, Adebayo et al. (2020) examine the urobiome of o

45 treatment outcomes is partially explained by microbes adopting a drug-resistant biofilm mode of growt

46 l in microbiome studies is determining which microbes affect host physiology.

47 ng the specific physiological mechanisms and microbes affected has been difficult due to 'cage' and '

48 iple metaorganismal pathways (involving both microbe and host) both impact CVD in animal models and s

49 n this review we summarize the mechanisms of microbe and MUC1 interactions, and highlight how MUC1 pl

50 diverse and depend on the nature of both the microbe and the host.

51 onsequently it is exposed to a wide range of microbes and allergens.

52 omics unveiled distinct ecological niches of microbes and antibiotic resistance genes characterized b

53 atal antibiotics on vertical transmission of microbes and antimicrobial resistance is not well unders

54 have focused on interactions between plants, microbes and arthropods (PMA).

55 changes in the predominant C sources of soil microbes and can thus provide mechanistic insights into

56 ew, we will describe how NOD1 and NOD2 sense microbes and cellular stress to regulate host responses

57 an atlas of potential relationships between microbes and host immunological molecules.

58 no established associations between specific microbes and IBD.

59 ons of immunoglobulins; interactions between microbes and immune and epithelial cells; and malignant

60 se-and-effect relationships between specific microbes and initiation and progression of various cance

61 biomass of the detrital food web, including microbes and invertebrates, was not affected by fire.

62 ext decade, advances in our understanding of microbes and microbiomes will likely transform our way o

63 bivore grazing affects soil micro-food webs (microbes and nematodes) and ecosystem functions (soil C

64 studies exploring the relationships between microbes and plants at the community level have only use

65 of 12-100 amino acids synthesized by certain microbes and released extracellularly to inhibit the gro

66 ble Nbs can be rapidly produced in bulk from microbes and resist lyophilization and aerosolization.

67 nce, especially for direct signaling between microbes and sensory neurons, is lacking.

68 pretation of stoichiometric imbalances among microbes and soils and are highly relevant for developin

69 Microbes and sunlight convert terrigenous dissolved orga

70 For soil microbes and the ecosystem functions they catalyze, whet

71 zation-and by interactions among and between microbes and the host.

72 The dance between microbes and the immune system takes place in all biolog

73 This study reveals the resourcefulness of microbes and the interplay between virulence systems and

74 systematic overview of interactions between microbes and the large complement of C-type lectins, her

75 easily applicable to any interaction between microbes and their algal or plant host, and have therefo

76 fecting the gut microbiota, the roles of gut microbes and their bioproducts in the development and cl

77 s to mediate symbiotic relationships between microbes and their hosts.

78 Intestinal microbes and their metabolites affect the development of

79 We discuss how microbes and their products contribute to liver disease

80 The battle between microbes and their viruses is ancient and ongoing.

81 Neutrophils kill invading microbes and therefore represent the first line of defen

82 Three-way interactions between plants, microbes, and arthropods (PMA): Impacts, mechanisms, and

83 rphology, motility, antagonism against other microbes, and biofilm formation.

84 fies lipopolysaccharide (LPS), regulates gut microbes, and dephosphorylates proinflammatory nucleotid

85 for the identification of biothreat-relevant microbes, and for differentiating between a kanamycin su

86 Viruses, microbes, and host macroorganisms form ecological units

87 y can be used to interrogate other diseases, microbes, and mechanisms.

88 egulation of growth, the entry of beneficial microbes, and protection against pathogens.

89 olecule (CEACAM) family, which interact with microbes, and transforming growth factor beta (TGFB) sig

90 defence against bark beetles and associated microbes; and (3) implementing conifer-bark beetle inter

91 We measured levels of antibodies against microbes (anti-Saccharomyces cerevisiae IgA or IgG, anti

92 rein, we review recent progress on symbiotic microbe-arbovirus interactions and summarize the molecul

93 Microbes are embedded in complex communities where they

94 Interactions among microbes are key drivers of evolutionary progress and co

95 Under eubiotic conditions commensal microbes are known to provide a competitive barrier agai

96 ns in immunocompromised patients since these microbes are not well adapted human pathogens.

97 Symbioses between animals and microbes are often described as mutualistic, but are sub

98 These stone-dwelling microbes are often resistant to extreme environments inc

99 review recent evidence confirming that oral microbes are specialized for individual habitats within

100 Microbes are the most diverse organisms on the planet.

101 'specialist' therefore do not apply to these microbes, as specialization evolves independently on dif

102 However, the identity of gut microbes associated with disease risk, their mechanisms

103 the plasma membrane with the recognition of microbe-associated molecular patterns (MAMPs) via patter

104 Co-occurrence networks of gene-microbe association were constructed to determine potent

105 etter describe how a host interacts with all microbes-beneficial, pathogenic, and commensal-and an op

106 In addition to microbes, beta-catenin-dependent pattern formation is al

107 oral health, and we evaluate transmission of microbes between mother and child.

108 Recently in Cell Host & Microbe, Boys et al.

109 n the prevalence of 79% of infant-colonizing microbes, but explain microbial prevalence less well in

110 swords in sepsis; they can help to eradicate microbes, but they also contribute to tissue injury.

111 Using microbes bypasses many societal and environmental concer

112 In this issue of Cell Host & Microbe, Caballero-Flores et al.

113 ss-reactivity where previous exposure to one microbe can alter immunity to subsequent, non-related pa

114 The recognition that microbes can access and replicate in privileged compartm

115 Social interaction between microbes can be described at many levels of details: fro

116 Root-associated microbes can improve plant growth, and they offer the po

117 In particular, microbes can switch hierarchically between different ene

118 The microbe Clostridium pasteurianum produces three [FeFe]-h

119 ide a unique opportunity to interrogate host-microbe co-evolution and its impact on adaptive phenotyp

120 Strategies to prevent emergence of these microbe communities or their enzymatic activities might

121 is local adaptation between plants and soil microbe communities.

122 wground plant growth, likely enhancing plant-microbe competition for soil inorganic N, which was redu

123 Upon activation by microbes, complement opsonizes bacterial surfaces, recru

124 s are agricultural-important symbiotic plant-microbe composites in which microorganisms receive energ

125 Upon challenge with either live microbes or microbe-derived lipopolysaccharides (a ligand for TLR4),

126 tructure, sugars, Krebs cycle intermediates, microbe-derived metabolites and altered metabolite trans

127 due to control of systemic concentrations of microbe-derived SCFAs.

128 The interactions between microbes, diet, host factors, drugs, and cell-cell inter

129 ing a relationship in which a non-pathogenic microbe directly synthesizes a signal that alters host b

130 Microbes do not have this luxury.

131 In this issue of Cell Host & Microbe, Domenech et al.

132 of the complex feedbacks between plants and microbes during, and particularly after, drought.

133 Urinary microbes, especially in aging populations, are associate

134 Despite the important roles of soil microbes, especially the most diverse rare taxa in maint

135 Gut mucosal microbes evolved closest to the host, developing special

136 Gut microbes exhibit diurnal rhythmicity, and disruptions in

137 11-14 weeks of gestation, yet whether viable microbes exist in utero and interact with the intestinal

138 ications with large effects on both host and microbe fitness, such as the timing of key transitions.

139 four subspecies, including the opportunistic microbe Francisella tularensis subsp. novicida, there ar

140 Despite the difficulty in culturing many microbes from an environment, we can still study these c

141 cids are metabolites generated by intestinal microbes from dietary fiber.

142 evidence supporting transmission of selected microbes from mothers to children, but risk of colonizat

143 ratory disease supports cross-pollination of microbes from MWF to humans and suggests the potential f

144 ethods protocol, probe sets for >5000 common microbes from RefSeq, and an online tool to generate cus

145 e intestine separate its nearly 100 trillion microbes from the rest of the human body.

146 ght barrier, separating luminal antigens and microbes from underlying tissue compartments.

147 For most microbes, glucose is a preferred carbon source, and it h

148 Quantifying how microbes grow is therefore fundamental to areas such as

149 During beer ageing, endogenous barrel microbes grow spontaneously and transform wort/beer comp

150 In this issue of Cell Host & Microbe, Guo, Kasahara et al. (2020) reveal a critical r

151 (III)) methyltransferase gene (arsM) in soil microbes has been used as an indication of their capacit

152 ablishing how the NADPH oxidase (NOX2) kills microbes has proven elusive.

153 avity is one of the first environments where microbes have been discovered and studied since the dawn

154 timates greater than 10% with most heritable microbes having potential clinical relevance, including

155 In this issue of Cell Host & Microbe, Herfst et al. and Henritzi et al. help define t

156 obligate intracellular bacterium, inhibiting microbe-host cell interactions that facilitate invasion

157 Understanding microbe-host interactions at the molecular level is a ma

158 ial volatiles can mediate microbe-microbe or microbe-host interactions.

159 sites of active Hg methylation by anaerobic microbes; however, the amount of methylmercury produced

160 In this essay, I reflect on the evolution of microbe hunting, beginning with the history of pre-germ

161 was processed and analyzed using Human Oral Microbe Identification using Next Generation Sequencing

162 ce of internal fluxes can be chosen for each microbe in a community and this basis can be used to sim

163 ting the presence and relative abundances of microbes in a sample, is a critical first step in microb

164 sults suggest that AD may select for similar microbes in different anatomical locations-an "AD-like m

165 of the first detailed analysis of cultivable microbes in homes of older adults and their relationship

166 ave highlighted the importance of intestinal microbes in human physiology and disease pathogenesis.

167 iated by fermentation products of intestinal microbes in mice.

168 sions; however, the exact role of indigenous microbes in MRONJ development is unknown.

169 iverse communities of aquatic arthropods and microbes in nature.

170 The role of microbes in sustaining agricultural plant growth has gre

171 types, fitness, and community composition of microbes in the context of the environment and suggest d

172 immune system matures via interactions with microbes in the gut.

173 provide a deep characterization of the first microbes in the human gut and show how the biochemical e

174 ribe a previously unappreciated diversity of microbes in the mesenteric adipose tissue (MAT) surround

175 most plausible cause is activities of marine microbes in the sediment.

176 udies should routinely incorporate symbiotic microbes in their experimental designs.

177 ficient in vWbp, but clearance of these same microbes in WT mice was restored if active thrombin was

178 Many microbes, including Mycobacterium tuberculosis, have evo

179 ome melanoidins were extensively used by gut microbes, increasing production of short chain fatty aci

180 Although microbes influence plant growth, little is known about t

181 Plant-associated microbes influence plant performance and may also impact

182 We show here that intestinal microbes influence the thymic homeostasis of PLZF-expres

183 Microbes inhabit ever-changing environments in which the

184 During infection, invading microbes interact with host mucins lining the glandular

185 The presented results identify a novel host-microbe interaction which may ultimately lead to the dev

186 populations and soils to test whether plant-microbe interactions affect the plant's geographic range

187 erve as a roadmap for future studies on host-microbe interactions and interventions.

188 ry factor (MIF), a cytokine involved in host-microbe interactions at the gut interface.

189 This work implies that diet-microbe interactions can alter the host response to drug

190 Virus-microbe interactions have been studied in great molecula

191 moral microbiome and the elucidation of host-microbe interactions that curtail antitumor immunity als

192 ignature, probably due to heterogeneous host-microbe interactions, and show only marginal microbiota

193 meworks have been widely used to infer virus-microbe interactions, overcoming the limitations of cult

194 ithout considering impacts on plant and soil microbe interactions.

195 evasion, expanding our understanding of host-microbe interactions.

196 esolved processes underpinning complex plant-microbe interactions.

197 tlR is critical to the establishment of host-microbe interactions.

198 lular adhesion mediates many important plant-microbe interactions.

199 cies that live on corals and influence coral-microbe interactions.

200 se potential risks by harboring and shedding microbes into the drinking water distribution system.

201 omic diagnosis of infectious diseases when a microbe is visualized but remains unidentified despite a

202 Vertical transmission of maternal microbes is a major route for establishing the gut micro

203 Symbiosis with microbes is a ubiquitous phenomenon with a massive impac

204 e catalog of human metabolites originated in microbes is critical for data-driven approaches to under

205 nificant portion of the selection exerted on microbes is explained by the environment and is associat

206 Yet cross-reactivity to additional microbes is important to consider, especially in HIV inf

207 but the importance of interactions with soil microbes is increasingly acknowledged.

208 nteraction between plant roots or pathogenic microbes is initiated by mutual exchange of signals.

209 while immunity towards a range of pathogenic microbes is maintained.

210 The mineral precipitating capability of microbes is often harnessed for green synthesis of metal

211 otrophic carbon dioxide (CO(2) ) fixation by microbes is ubiquitous in the environment and potentiall

212 t in the rare genus Veillonella, a commensal microbe known to have lactate-degrading and performance-

213 A community of commensal microbes, known as the intestinal microbiota, resides wi

214 In this issue of Cell Host and Microbe, Lee et al.

215 e, we report that animals also make complex, microbe-like polyketides.

216 In this issue of Cell Host & Microbe, Liu et al.

217 ines and indicate that relationships between microbes, mammalian hosts and their hematophagous arthro

218 l DNA (rDNA) suggests thousands of different microbes may be present in a single sample.

219 In this issue of Cell Host & Microbe, McDonald et al.

220 Herein, the different types of microbe-mediated biomineralization that occur in nature,

221 Microbe-mediated mineralization is ubiquitous in nature,

222 Understanding how microbes metabolically communicate with their hosts will

223 ically originated airborne particles such as microbes, metabolites, toxins, and fragments of microorg

224 he environment, particularly at the level of microbe-microbe associations.

225 e shown that microbial volatiles can mediate microbe-microbe or microbe-host interactions.

226 Dietary supplementation with beneficial microbes might reduce the detrimental effects of a Weste

227 Microbe-mineral interactions are ubiquitous and can faci

228 Microbe-mineral interactions have shaped the surface of

229 Upon stimulation with microbes, monocytes from PSC patients produced significa

230 macrophages with the membrane-permeabilizing microbe Mycobacterium tuberculosis or infection of targe

231 ociations beyond those expected when related microbes occupy similar environments.

232 ngthened our model and allowed us to predict microbe occurrences with ~90% accuracy.

233 with the potential of moving to an array of microbes of ecological and medical relevance.

234 gallates and depsides - has been reported in microbes only.

235 Upon challenge with either live microbes or microbe-derived lipopolysaccharides (a ligan

236 In this issue of Cell Host & Microbe, Perault et al.

237 caused, in part, by altered transcription of microbe perception genes and defence genes.

238 However, the precise role that oral microbes play in the extraoral organs, including the gut

239 ricarboxylic acid cycle, which resulted from microbe production of the metabolite succinate.

240 In this issue of Cell Host & Microbe, Reitmeier et al.

241 utualistic and symbiotic; in this case, each microbe relies on its partner's ability to degrade diffe

242 These findings suggest microbes rely on different oxidative strategies dependin

243 terns and resistomes of hospital-environment microbes remain underexplored.

244 ther they also relay signals from intestinal microbes remains unknown.

245 segmentous filamentous bacteria (SFB), a gut microbe residing on ileum villi and PP FAE that mediates

246 icrobial patterns have shed new light on how microbes secrete OM vesicles (OMVs) to influence inflamm

247 ronment influences cell growth, but also how microbes shape their chemical environment.

248 In stool and tongue samples, microbes shared between mothers and infants are more abu

249 he intestinal microbiome (including specific microbes, signaling pathways, and microbiota-related met

250 ctive operational taxonomic units composed a microbe signature specific to CD with high diagnostic pr

251 t two types of specialized lignocellulolytic microbes-soft rot fungi and tunnelling bacteria-are acti

252 bolism and offers prospects for detection of microbe-specific VOC biomarkers from two potential biowa

253 Microbe-stimulated monocytes drive Th17 differentiation

254 new evidence supporting the theory that soil-microbe systems are self-organising states with organic

255 An example of a versatile microbe that exhibits a wide variety of states is the ba

256 rnative nitrogenases have only been found in microbes that also have molybdenum nitrogenase.

257 Microbes that cause persistent infections (e.g., herpes

258 The notion of probiotics as microbes that confer health benefits has its origins in

259 array and suitable protocols for labeling of microbes that could be used to probe this array.

260 Lastly, we identify molecules and microbes that demonstrate different seasonal patterns in

261 romises an unbiased approach to detection of microbes that does not depend on growth in culture or th

262 tween group 2 innate lymphocytes and gastric microbes that enhance IgA production.

263 in primates is facilitated by commensal gut microbes that ferment otherwise indigestible plant matte

264 arth's atmosphere brought challenges for the microbes that had evolved enzyme machinery and metabolic

265 Methanogenic microbes that inhabit organic- and Fe(III)-rich anaerobi

266 ntegral part of the pathogenic strategies of microbes that require human (and/or mammalian) hosts, in

267 t also provides an armamentarium against the microbes that threaten our health.

268 endosymbioses, signaling between plants and microbes, the control of microbial infection of plant ce

269 r-relationship between mammals and their gut microbes, the number of studies addressing the role of t

270 n providing a fitness advantage to competing microbes, the significance of antibiotic production in m

271 In microbes, the synthesis of enzymes that are used to tran

272 abilities, are known to associate with other microbes, thereby compensating for their own auxotrophie

273 In this issue of Cell Host & Microbe, three papers describe the pseudotyping of vesic

274 xidants, and nonoxidant pathways that target microbes through several mechanisms.

275 plant leaf traits indirectly influenced soil microbes through their impact on soil abiotic conditions

276 For soil microbes tightly associated with plant roots, such as ar

277 s the ability of this clinically significant microbe to bypass host defenses and cause invasive disea

278 suggests the potential for exposure to these microbes to be a health hazard.

279 adherence and eliminates the ability of both microbes to form biofilms.

280 A(Latent Dirichlet allocation)-link connects microbes to genes using reduced-dimensionality LDA topic

281 er our knowledge of the mechanisms commensal microbes use for nutrient acquisition.

282 genome recoding and physical containment of microbes using auxotrophies, regulation of essential gen

283 Eighteen microbes were differentially abundant (q-value < 0.05) b

284 nate with zones up to 192 meters thick where microbes were undetectable.

285 Dendritic cells are efficient at capturing microbes when immature, whereupon they can transform int

286 Studying the biology of the individual microbes when in association with other members of the c

287 Plastics become rapidly colonized by microbes when released into marine environments.

288 human body supports a thriving diversity of microbes which comprise a dynamic, ancillary, functional

289 s present a barrier to inhaled allergens and microbes, which alter immune responses and subsequent ri

290 Sulfur-metabolizing microbes, which convert dietary sources of sulfur into g

291 n GDGTs thus capture the energy available to microbes, which encompasses fluctuations in temperature

292 ewed as a rigid classification of pathogenic microbes, which exhibit remarkable variation and complex

293 erature limit for the growth of cold-adapted microbes-which are abundant in polar soils and have pivo

294 natural environment, but the interactions of microbes with PHCs and the environment are highly comple

295 n used to investigate EET in a wide range of microbes, with emphasis on dissimilatory metal-reducing

296 The spatial organization of microbes within the mouth is shaped by opposing forces i

297 That pipefishes survive in an ocean of microbes without one arm of the adaptive immune defense

298 In this issue of Cell Host & Microbe, Yang et al.

299 In this issue of Cell Host & Microbe, Young et al. shed light on dengue virus 3-speci

300 In this issue of Cell Host & Microbe, Zingl et al.