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1 and with C-to-T editing of the proviral DNA minus strand.
2 ished that HCV dsRNA contained genome-length minus strands.
3 d by analysing reads generated from plus and minus strands.
4 osphorylated P23/nsP3 and reduced amounts of minus strands.
5 icted to be more stable on plus strands than minus strands.
6 sP3 and lost selectively the ability to make minus strands.
8 of APOBEC3F and -3G dictates the retroviral minus strand 5'-TC and 5'-CC dinucleotide hypermutation
12 on reversibly affected an early step in both minus-strand and plus-strand RNA synthesis, although inh
13 ts and variants of the promoter template for minus-strand and subgenomic RNA initiation, we found tha
15 , an RC DNA species with a covalently closed minus strand but an open plus strand (closed minus-stran
16 hesis by SIN2V produced 250% of wt levels of minus strands but accumulated only 110% of wt levels (0.
17 312 to Ser) made phosphorylated P23/nsP3 and minus strands but failed to increase plus-strand synthes
18 e that H5 functions to suppress synthesis of minus strands by sequestering the 3' terminus from the R
21 f the plus strand in RC DNA, suggesting that minus-strand closing can occur before plus-strand proces
23 hairpin overlapping the 5' end of DR1 in the minus strand contributes to the regulation of primer tra
24 estering a host-coded tRNA for initiation of minus (-) strand DNA synthesis is central to the reverse
27 A cytidine deaminase that targets retroviral minus-strand DNA and has potent antiviral activity again
28 ide which represents the 5' end of the viral minus-strand DNA and is covalently attached to the RT.
29 to copy through the DNA-RNA junction of the minus-strand DNA and the tRNA because of its bent confor
30 he cis-acting sequences for the synthesis of minus-strand DNA are present near the 5' and 3' ends of
31 ntial decrease in the accumulation of longer minus-strand DNA by A3G, compared to the shorter minus-s
32 example, mutations within the 3' end of the minus-strand DNA can lead to increased levels of in situ
33 echanism involves deaminating dC residues in minus-strand DNA during reverse transcription, resulting
35 redundancy (5'r and 3'r) on the ends of the minus-strand DNA has been shown to be important, but not
36 hepadnaviruses is important for synthesis of minus-strand DNA in both DHBV and HHBV but not in HBV.
38 otein covalently linked to the 5' end of the minus-strand DNA occurs inside the capsid in the cytopla
40 as been shown to form near the 3' end of the minus-strand DNA overlapping the direct repeat 1 in avih
41 the recombination events taking place during minus-strand DNA synthesis and plus-strand DNA synthesis
43 al and that most recombinations occur during minus-strand DNA synthesis catalyzed by viral reverse tr
44 riptase inhibitors influence the kinetics of minus-strand DNA synthesis differently, providing insigh
45 or the first time the ex vivo rates of HIV-1 minus-strand DNA synthesis in 293T and human primary CD4
46 iring between phi and epsilon contributes to minus-strand DNA synthesis is not known, but a simple sp
47 identified a cis-acting element involved in minus-strand DNA synthesis that lies within a 27-nucleot
59 d DNA synthesis was defined as the amount of minus-strand DNA synthesized per encapsidation event.
60 hout an appreciable decrease in the level of minus-strand DNA synthesized, indicating that most of th
61 ynthesis at one of two distinct sites on the minus-strand DNA template, resulting in two different en
64 nd of the plus strand from the 5' end of the minus-strand DNA to the 3' end, where further elongation
65 e nascent plus strand from the 5' end of the minus-strand DNA to the 3' end, where further elongation
70 2 (DR2) located near the opposite end of the minus-strand DNA, a process called primer translocation.
71 s-strand DNA by A3G, compared to the shorter minus-strand DNA, and suggest that A3G exerts its inhibi
72 e transcribed by the viral polymerase into a minus-strand DNA, followed by synthesis of the plus-stra
73 erences in their mechanisms for synthesizing minus-strand DNA, more so than for other steps in replic
75 of deaminating cytosines to uracils on viral minus-strand DNA, resulting in disruption of the viral l
77 e to deoxyuridine in newly synthesized viral minus-strand DNA, thereby inducing G-to-A hypermutation.
94 ated that the result of C to U conversion in minus-stranded DNA of human immunodeficiency virus type
95 and transcribe asymmetric levels of plus and minus strands during replication of plus-sense RNA virus
97 1 His374 and wild-type nsP4 Arg183 made more minus strands during the early period of infection and b
98 if1-hairpin (M1H), a replication enhancer on minus strands, forms a plus-strand hairpin flanked by CA
99 evidence of template strand switching, from minus-strand genome DNA to palindromic strand DNA, durin
100 site on the accumulation of BMV RNA3 genomic minus-strand, genomic plus-strand, and subgenomic RNAs i
101 satRNA of Cucumber mosaic virus is caused by minus-strand induction of the programmed cell death path
102 we found that a specificity determinant for minus-strand initiation could function at variable dista
104 h of which are similar to the hairpin of the minus-strand initiation promoter, can function as a prom
107 re abundant plus-strand RNA progeny than the minus-strand intermediate, a hallmark of replication of
109 nstructs expressing RNA1 and RNA2 suppressed minus-strand levels but increased plus-strand RNA accumu
110 olymerases was unaffected when corrected for minus-strand numbers, although 26S mRNA synthesis was en
111 nd with the transcription start sites on the minus strand of another distinct group of genes; togethe
112 rimer extension assay maps the 5' end of the minus strand of DP-rcDNA at the authentic end of virion
118 rnal promotion from the full-length template minus strand or by transcription from the minus-stranded
119 e contributes to the efficient initiation of minus strands or the formation of its replicase and that
121 ad a complex rearrangement that restored the minus-strand origin while retaining tetracycline resista
126 RNase H cleavages that remove the plus- and minus-strand primers; these ends can be joined to form t
127 optimal structure of the 3' component of the minus-strand promoter is the wild-type 3' CSE followed a
129 r the observed approximately 6:1 plus-strand/minus-strand ratio in vesicular-membrane structures, and
130 ed the copy number of TMEV genomes, plus- to minus-strand ratios, and full-length species in the spin
131 minus strand but an open plus strand (closed minus-strand RC DNA [cM-RC DNA]) was detected by this ap
133 the nsP4 Arg183 residue itself is needed for minus-strand replicase assembly or function in the mosqu
134 in P123 or P23 components of the short-lived minus-strand replicase, and upon polyprotein cleavage, m
135 a hairpin ribozyme (Rz3'X) targeting the HCV minus-strand replication intermediate at position 40 wit
137 emplate specificity, since a mutated repRNA, minus-stranded repRNA, or a heterologous viral RNA could
138 tes deoxycytidine to deoxyuridine on nascent minus-strand retroviral cDNA, leading to hyper-deoxyguan
139 ncapsidated cellular protein that deaminates minus-strand reverse transcript cytosines to uracils.
140 originates as a replication intermediate of minus-strand ribozyme replication and thus contains all
141 y simple process that involves complementary minus-strand RNA [(-)RNA] synthesis and subsequent (+)RN
142 these predicted structures were required for minus-strand RNA accumulation, including a conserved hex
145 is transferred to the 3' end of plus- and/or minus-strand RNA and serves as primer for production of
146 +5, and +7 template nucleotides accumulated minus-strand RNA at levels similar to the the wild-type
147 -UA-5' is required at the 3' terminus of the minus-strand RNA for initiation of plus-strand genomic R
148 ntaining precursor at the 3' end of plus- or minus-strand RNA for production of full-length RNA.
149 irectly interact with the 3' terminus of the minus-strand RNA for the initiation of the plus-strand g
150 (ii) the observed 10:1 asymmetry of plus- to minus-strand RNA levels can be explained by a higher-aff
152 se-containing replication complexes with HCV minus-strand RNA over HCV plus-strand RNA in order to in
153 ine genome stability, translation, plus- and minus-strand RNA replication, and scaffolding of viral r
155 dings of this study with regard to efficient minus-strand RNA synthesis are the following: (i) the wi
157 assumed to constitute the core promoter for minus-strand RNA synthesis during genome replication; ho
158 Among these, nsp10 plays a critical role in minus-strand RNA synthesis in a related coronavirus, mur
159 of eEF1A binding to the 3' SL RNA increased minus-strand RNA synthesis in transfected cells, which r
162 nucleotides of the 3' CSE severely inhibits minus-strand RNA synthesis, (iv) templates possessing no
163 re-sensitive mutants showed reduction in the minus-strand RNA synthesis, a function that has not yet
164 ntained the tRNA-like structures that direct minus-strand RNA synthesis, three were within the 3' reg
165 ch model states that AMV coat protein blocks minus-strand RNA synthesis, while another report states
173 nome and its complement in the 3' end of the minus-strand RNA synthesized during virus replication se
174 sis, three were within the 3' region of each minus-strand RNA that contained the core promoter for ge
175 ing region), the amount of replicon-specific minus-strand RNA was uniform; however, the accumulation
176 ous viral progeny from infected cells, viral minus-strand RNA, plus-strand RNA, and proteins that are
177 nscription of the incoming virion-associated minus-strand RNA, thereby preventing the synthesis of vi
178 tion of SL3 was required for accumulation of minus-strand RNA, whereas SL1 and SL2 formation were les
181 in the BMV replicase in vitro reaction, the minus-strand RNA3 template generated the sgRNA3a product
183 ligo(U) stretch at the 5' end of coronavirus minus-strand RNAs, it is tempting to speculate (but rema
185 able of de novo initiation on both plus- and minus-strand satC and satD templates, which are small pa
187 en reading frames, which produced additional minus-strand sgRNAs corresponding to the 3'-terminal mRN
189 bound specifically to the West Nile virus 3' minus-strand stem-loop [WNV3'(-)SL] RNA (37) and colocal
190 nked viral polymerase from the 5' end of the minus strand [(-)strand] of viral relaxed circular DNA (
194 MAD-4 for 1 h prior to infection reduced HIV minus-strand strong stop DNA and HIV cDNA by 4- to 20-fo
195 resulted in a threefold increase in both HIV minus-strand strong stop DNA and HIV cDNA over the first
196 had little or no effect on the formation of minus-strand strong-stop cDNA but caused a significant r
201 that remained annealed to the 3' end of the minus-strand strong-stop DNA only if NC was present in t
203 e tested in vitro for exogenous RT activity, minus-strand strong-stop DNA synthesis in endogenous RT
212 entered target ED cells and produced early (minus-strand strong-stop) and late (Gag) viral DNA produ
214 egration site sequences into plus-strand and minus-strand subpopulations, and use this to identify th
215 utants can promote template switching during minus strand synthesis more efficiently than WT HIV-1 RT
220 t nsP2, all showed a phenotype of continuous minus-strand synthesis and of unstable, mature replicati
221 hese results implicate nsP2 in regulation of minus-strand synthesis and suggest that different region
222 s of this function leads to continuous viral minus-strand synthesis and the production of unstable RC
223 at it may also act with the host to regulate minus-strand synthesis and the stability of the RTC.
224 t a single point mutation in nsP1 results in minus-strand synthesis at greater than wild-type levels
228 l degradation of the retroviral genome after minus-strand synthesis can occur through sequence-specif
229 ing the early period of infection and before minus-strand synthesis ceased at about 4 h postinfection
234 anidine hydrochloride (GuHCl) (which targets minus-strand synthesis to produce double-stranded RNA) w
236 The failure by the PI replicons to shut off minus-strand synthesis was not due to some defect in the
237 s) growth phenotype caused by a ts defect in minus-strand synthesis whose extent varied with the part
239 10))VAV, had defects in subgenome synthesis, minus-strand synthesis, and overall levels of viral RNA
241 cells with wt SFV triggered the shutdown of minus-strand synthesis, which we believe is a host respo
254 k hepatitis B virus capsids, the ends of the minus-strand template are juxtaposed via base pairing to
258 cient MEF, there was continuous synthesis of minus-strand templates and the formation of new replicat
259 (RdRp) preparation, we demonstrate that the minus-strand templates of tombusviruses contain a replic
261 ate cRNA synthesis de novo on both plus- and minus-stranded templates, (ii). to generate replicase pr
262 vides unpaired 3'-UA-5' at the 3' end of the minus strand that can be utilized by the mutant polymera
263 V-infected cells accumulated only 40% of the minus strands that were made, cells must possess some pr
267 virus-1, which contains a 97-nt R sequence, minus strand transfer occurs through an acceptor invasio
268 in vitro were designed to test mechanisms of minus strand transfer of human immunodeficiency virus 1
269 or acceptor invasion initiation site using a minus strand transfer system in vitro, containing the 97
270 sm of human immunodeficiency virus 1 (HIV-1) minus strand transfer was examined using a genomic RNA s
272 etrovirus minus strand strong stop transfer (minus strand transfer) requires reverse transcriptase-as
276 ity in an assay that measures stimulation of minus-strand transfer and inhibition of nonspecific self
278 is reaction mimics the annealing step of the minus-strand transfer process in reverse transcription.
279 stability, is a critical determinant for the minus-strand transfer step (annealing of acceptor RNA to
280 nucleic acid rearrangements that precede the minus-strand transfer step in reverse transcription.
283 vity of the nucleocapsid protein (NC) in the minus-strand transfer step of HIV-1 reverse transcriptio
284 ase-pair duplex, is an essential step in the minus-strand transfer step of reverse transcription.
285 TAR DNA hairpin is an essential step in the minus-strand transfer step of reverse transcription.
288 s demonstrate that for efficient NC-mediated minus-strand transfer, a delicate thermodynamic balance
289 by the nucleocapsid protein (NC), including minus-strand transfer, in which the DNA transactivation
290 wed that although the drug did not stimulate minus-strand transfer, it did stimulate minus-strand str
291 During human immunodeficiency virus type 1 minus-strand transfer, the nucleocapsid protein (NC) fac
296 s G to A hypermutations in newly synthesized minus strand viral cDNA at the step of reverse transcrip
298 lly induce deaminations toward the 5' end of minus-strand viral DNA, presumably because of the sequen
299 s exist in a "melted" configuration, and the minus-strand viral genome and a palindromic strand are a