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1 trates, whereas canonical type I PKS KSs are monophyletic.
2 es--Columbea and Passerea--were supported as monophyletic.
3 umscribed by phenotypical characters are not monophyletic.
4 mesiidae, Ctenizidae, and Dipluridae are not monophyletic.
5 sentative of four lemuriformes families were monophyletic.
6 result confirming that 'crustaceans' are not monophyletic.
7 grouping and we conclude that chordates are monophyletic.
8 All but two subfamilies are recovered as monophyletic.
9 ry of this population demonstrates that S is monophyletic.
10 he genus, and may therefore be assumed to be monophyletic.
11 ionship between SARS CoV and group 2 CoVs is monophyletic.
12 unaffected by selective drug pressure, were monophyletic.
13 dings indicate that archaeal methanogens are monophyletic.
14 the group Deuterostomia, well established as monophyletic.
15 hat mammals with tribosphenic molars are not monophyletic.
16 onukia Ishihara and Onukia Matsumura are not monophyletic.
17 ly ectophytophagous sawflies are found to be monophyletic.
18 n the Eastern North Pacific are reciprocally monophyletic.
20 systematic error, we find strong support for monophyletic Acari (ticks and mites), which when conside
24 the species is subdivided into three or five monophyletic agr groups but failed to reject the hypothe
25 cate that (i) the supergroup Excavata is not monophyletic and (ii) the last common ancestor of eukary
26 imately 63% of 425 surveyed morphogenera are monophyletic and 19% are polyphyletic, although certain
27 ous studies showing that the Ixodes genus is monophyletic and clarify the relationships among Ixodes
28 thin Gondwanatheria, which are recognized as monophyletic and closely related to multituberculates, a
29 lyses suggest that class Ia subunits are not monophyletic and consistently placed the apicomplexan-sp
33 eassert the hypothesis that Staphylininae is monophyletic and indeed the sister group to Paederinae u
34 ogenetic analyses indicate that Val76 is not monophyletic and likely occurs in conjunction with diffe
36 n populations of Scapholeberis rammneri were monophyletic and nested within a closely related clade o
37 r phylogenetics, arthropods were found to be monophyletic and placed within a clade of molting animal
41 ve overlap, the two species are reciprocally monophyletic and show strongly bimodal genotypic cluster
44 alysis to show that Malagasy carnivorans are monophyletic and thus the product of a single colonizati
45 Strikingly, we found that very few OTUs were monophyletic, and many showed evidence of multiple indep
46 egions except env, lion subtypes B and E are monophyletic, and marginally more similar to Pallas cat
47 iously delimited) were strongly supported as monophyletic, and their relationships were fully resolve
48 nships between taxa that are not necessarily monophyletic, and visualizing how these relationships ch
49 e genera Ecchlorolestes and Chlorolestes are monophyletic, and we propose that the Neotropical family
51 alonyx pair together as megatherioids, while monophyletic Antillean sloths may be sister to all other
53 e found that the BMN-family antigens are not monophyletic as currently annotated, but rather can be c
54 kinases and some related proteins comprise a monophyletic assemblage within the P-loop NTPase fold.
55 ver, these characteristics do not group into monophyletic assemblages, suggesting rampant convergent
56 enes constitutes only one branch of a larger monophyletic assembly dominated by over 20 genes encodin
57 From reconstructed genomes we have defined monophyletic bacterial and archaeal DGR lineages that ex
58 ubstantial molecular differentiation in this monophyletic Bellamya clade has arisen since Late Pleist
59 nce, some gene genealogies were reciprocally monophyletic between these species, while others were pa
65 ns of the newly isolated mbf1 genes formed a monophyletic clade different from other lichen-forming f
66 es considered calpain-2 orthologues formed a monophyletic clade external to sister clades for tetrapo
67 examined include almost all species within a monophyletic clade of endemic Hawaiian Tetragnatha speci
68 T loci have been characterized from a single monophyletic clade of fungi, the Dikarya (the ascomycete
69 hyla within which plant annexins represent a monophyletic clade of homologs descended from green alga
70 strated by a single well-defined constituent monophyletic clade of L1 non-LTR retrotransposons that i
72 In this article, we argue that identifying a monophyletic clade of metastatic subclones does not prov
75 rains of GALV isolated from gibbons formed a monophyletic clade that was closely related to the wooll
76 vides strong support for the legitimacy of a monophyletic clade Vicissicaudata, and demonstrates the
77 paraphyletic in our analyses, only forming a monophyletic clade when the B. canis genome was included
78 alyses demonstrated that SIVdrl1FAO formed a monophyletic clade with SIVmnd5440 and SIVmndM14, recent
81 sis showed that RtAstV and RTCV grouped in a monophyletic clade with viruses identified from poultry
82 y in which ungulate malaria parasites form a monophyletic clade within the Haemosporida, and branch p
83 morphologically while belonging to the same monophyletic clade, plus knowledge of the relevant GRNs
84 haplotypes from different populations form a monophyletic clade, suggesting a single origin of the NM
85 inae, Polistinae, and Vespinae) as a derived monophyletic clade, thus implying a single origin of eus
86 ta demonstrated that HSP90(AA+AB+B) formed a monophyletic clade, whereas TRAP is a relatively distant
90 es showed that SNAPs were distributed in six monophyletic clades corresponding to the major plant lin
91 an automated Cluster Picker which identifies monophyletic clades meeting user-input criteria for boot
92 F mitotypes of all species form reciprocally monophyletic clades supporting the hypothesis of taxon-s
95 f the Candidate Phyla Radiation, forming six monophyletic clades that distinctly associate with eithe
98 lement from pVAPN, pVAPA, and pVAPB to seven monophyletic clades, each containing plasmid type-specif
99 analyses identify at least four separate and monophyletic clades, which should be recognized as four
104 nes demonstrated that the vpx genes formed a monophyletic cluster that grouped with vpr from SIVagm.
106 Nine of these hypothetical proteins form a monophyletic cluster within the broad superfamily of fer
107 , the strains detected in Sao Paulo formed a monophyletic cluster, suggesting that they were local-ad
108 iation allowed the definition of at least 20 monophyletic clusters associated with 9 or more differen
111 rium oxysporum is a phylogenetically diverse monophyletic complex of filamentous ascomycetous fungi t
112 da, Nematomorpha), together constituting the monophyletic Cycloneuralia that is the sister group of t
113 eas molecular phylogenetic studies recover a monophyletic Cyclostomata (hagfish and lampreys as close
116 Phylogenetic analysis of GH48 showed non-monophyletic distribution, an indication of horizontal g
117 nsmission pairs, that recipient viruses were monophyletic, encoding compact, glycan-restricted envelo
119 rtant duplications, leading to the separate, monophyletic enzyme families, coupled to individual late
120 consistently right-skewed, with most clades (monophyletic families and genera) containing few lineage
124 receptor (CHIR) genes are members of a large monophyletic gene family and are organized into genomic
125 suggest that class II sequences constitute a monophyletic gene family within the plant and microbial
126 amilies and genera) containing few lineages (monophyletic genera and species, respectively), while on
127 most species for which FIV is endemic harbor monophyletic, genetically distinct species-specific FIV
129 anch leading to the common ancestor of their monophyletic group (for example Chiroptera), followed by
130 pliosaurids represent a globally distributed monophyletic group (the genus Pliosaurus, excluding 'Pli
131 quence analysis shows that these ADHs form a monophyletic group along with additional family members
133 the H. ventricosa group do not constitute a monophyletic group and Alcyonohippolyte does not constit
134 showed the putative class II CysRSs to be a monophyletic group and homology modeling revealed a cons
135 we show that swarming species do not form a monophyletic group and non-swarming species that are clo
137 t all endemic Malagasy primates constitute a monophyletic group and to determine the evolutionary rel
139 , a West African M. excelsa cluster formed a monophyletic group at plastid DNA and was more related t
140 ophora has been treated as a paraphyletic or monophyletic group at the base of the Mollusca, proximat
141 ntain a topoisomerase IB gene that defines a monophyletic group closely related to the eukaryotic enz
142 yses reveal that the coliphage species are a monophyletic group consisting of two clades representing
143 iously placed in different clusters formed a monophyletic group in all trees, suggesting that the Pro
144 er hepadnavirus did not form a fish-specific monophyletic group in the phylogenetic analysis of all t
145 spiny Solanum species constitute the largest monophyletic group in the Solanaceae family, but a high-
146 of diplomonad and trichomonad GPIs formed a monophyletic group more closely related to cyanobacteria
148 that form complex oligomers are limited to a monophyletic group of families; (3) kinesins that crossl
149 ed alpha L, alpha M, alpha X, and alpha D, a monophyletic group of immune cell-expressed alpha integr
150 ematode symbiont is a member of a widespread monophyletic group of invertebrate host-associated micro
152 enzyme that moved horizontally into a unique monophyletic group of odour-forming staphylococci about
153 Mediterranean Sea Brine Lakes 1) comprises a monophyletic group of uncultured archaea found in differ
155 atively, all Syncerus sequences cluster as a monophyletic group on an evolutionary tree and differ fr
156 indicated that perchlorate reductase forms a monophyletic group separate from chlorate reductase of I
157 diaetids, atypids, and mecicobothriids) is a monophyletic group sister to all other mygalomorphs; and
158 of Madagascar (Primates: Lemuriformes) are a monophyletic group that has lived in isolation from othe
161 hippolyte does not constitute a reciprocally monophyletic group to Hippolyte, with both genera herein
163 pology in which Scaphoideus species formed a monophyletic group within a larger clade comprising thre
164 e aberrant spa-types (t112, t121) and form a monophyletic group within the clade of North American US
167 at the canine influenza virus genomes form a monophyletic group, consistent with a single interspecie
168 d that the three endosymbionts do not form a monophyletic group, indicating that the endosymbiotic li
169 e maize FIE2 and sorghum FIE proteins form a monophyletic group, sharing a closer relationship to eac
170 members of the family Metschnikowiaceae as a monophyletic group, three species of Debaryomyces, and s
181 alysis of nucleotide sequences revealed: (1) monophyletic grouping of alleles from each genus, (2) tr
182 nalysis of nucleotide sequences revealed (1) monophyletic grouping of alleles from each genus, (2) tr
183 s illustrates that UP-1s and UP-2s fall into monophyletic groups and are biased with respect to speci
184 However, by identifying sequences unique to monophyletic groups at increasing phylogenetic depths, w
186 therefore conclude that SYCP1 and SYCP3 form monophyletic groups of orthologous proteins across metaz
187 of both teleosts and tetrapods contain four monophyletic groups of SCNA genes, and that tandem dupli
188 rwise and multiple alignments), formation of monophyletic groups using Neighbour-Joining trees, and s
189 tic RAD51 and DMC1 genes formed two separate monophyletic groups when archaeal RADA genes were used a
190 e-based strategy-focused on common ancestry, monophyletic groups, and derived functional traits-is ex
191 he avian and mammalian viruses form distinct monophyletic groups, implying that interclass transmissi
197 compassed by three early-radiating, arguably monophyletic groups: Amoebozoa, opisthokonts, and bikont
199 In order to investigate whether a novel monophyletic HAdV-D8 strain prevailed during the epidemi
200 d with genomic surveys, that Cyclostomata is monophyletic: hagfish and lampreys share 4 unique microR
202 d surprisingly close genetic affinity of the monophyletic Hawaiian group to two diploid species of mo
203 pomorphies are also evident between them and monophyletic Homo habilis/rudolfensis + H. erectus.
204 , the causative agent of typhoid fever, is a monophyletic, human-restricted bacterium that exhibits l
208 Bacteria domain; (iv) almost all groups are monophyletic in prokaryotes at most taxonomic levels, bu
210 to determine whether the derived S morph was monophyletic, indicating a long history of coexistence w
211 ever, isolates of the same serotype were not monophyletic, indicating that recombination had occurred
212 cally similar allopatric populations are not monophyletic, indicating that the mostly coastal 'long-b
217 A. baumannii, even a fairly recently derived monophyletic lineage can still exhibit significant genot
219 nd plants (also known as embryophytes) are a monophyletic lineage embedded within the green algae.
220 yses showed that the Ugalla viruses formed a monophyletic lineage most closely related to viruses end
222 crabs) as the successive sister groups of a monophyletic lineage of terrestrial arachnids, suggestin
223 247, including 24 GenBank records) formed a monophyletic lineage separate from other Periplaneta spe
226 last psbA gene resolves S. thermophilum as a monophyletic lineage with large genetic distances from a
227 e diverse than human parasites, which form a monophyletic lineage within the ape parasite radiation.
228 rial sequences, human P. falciparum formed a monophyletic lineage within the gorilla parasite radiati
229 led a diverse group of viruses that formed a monophyletic lineage within the SIVcpzPts radiation.
230 ancyla verreauxi evolved as two reciprocally monophyletic lineages formed by stem members of the trib
232 c structure was found, with two reciprocally monophyletic lineages on each side of the Great Rift Sys
233 s from Africa and Eurasia represent distinct monophyletic lineages separated for more than one millio
234 he S. maltophilia complex is divided into 23 monophyletic lineages, most of which harbour strains of
235 chondrial data identified three reciprocally monophyletic lineages: one representing all small forms
236 and DNA sequence analyses identified sets of monophyletic markers consistent with the pattern of dive
237 ply diverged and well-supported reciprocally monophyletic mitogenome clades in the cave lion, and an
238 lecularly-defined clades, even when strictly monophyletic morphogenera are excluded from analyses.
240 that form root-nodule symbioses are within a monophyletic 'nitrogen-fixing' clade and associated sign
243 propose a method for dividing the tree into monophyletic or paraphyletic groups so as to optimize th
245 rior hypotheses that found Triatominae to be monophyletic or polyphyletic and may be due to the more
247 es, but rejects the prevailing paradigm of a monophyletic Orbiculariae, the most diverse lineage, con
249 cterial genomes into one of seven undisputed monophyletic orders or families, despite great variabili
250 ested that A subgenomes of B. juncea were of monophyletic origin and evolved into vegetable-use and o
251 howed that divergent US DWV genotypes are of monophyletic origin and were likely generated as a resul
254 to all prior hypotheses, our data support a monophyletic origin of the landrace cultivars from the n
256 represent different evolutionary units with monophyletic origin that have undergone incipient ecolog
257 during domestication, expectations regarding monophyletic origins, and interpretations of multiple do
261 es (HPVs) have long been thought to follow a monophyletic pattern of evolution with little if any evi
263 are not likely to be the basal lineage of a monophyletic Porifera or the sister group to all other a
264 NN archaea are a potentially deep-branching, monophyletic radiation of organisms with small cells and
267 es derived from sera and mosquitoes showed a monophyletic relationship suggestive of a point source i
269 genera") are significantly more likely to be monophyletic relative to molecular phylogenies than rand
270 th less diverse than and nearly reciprocally monophyletic relative to those from T. b. brucei and T.
271 sis of the genus suggests that M. smithii is monophyletic, rendering a hybrid origin of asexuality un
275 pecimens from the Atlantic comprise a single monophyletic species and suggest possible species-level
277 suggests that: 1) genus Macaca contains four monophyletic species groups; 2) within the Asian macaque
278 nstrated L. acidophilus was a low diversity, monophyletic species with commercial isolates essentiall
281 yses, providing overwhelming support for the monophyletic status of subfamily Trichomycterinae includ
283 ences from invertebrate deuterostomes form a monophyletic subclade with vertebrate GlyT2, while inver
285 RD181) further divided this family into four monophyletic subgroups, demonstrating a deeper populatio
286 tuguese clades (26-79 sequences) and a large monophyletic subtype G Portuguese clade (236 sequences).
287 a patens has three profilin genes, which are monophyletic, suggesting a single ancestor for plant pro
289 PFam54 members able to bind human FH are not monophyletic, suggesting that human FH affinity, however
290 ty of the Cambarus subgenera are rejected as monophyletic, suggesting the morphological characters us
291 riation in many plant groups, and especially monophyletic taxa with multiple base chromosome numbers,
293 e probability that a set of gene lineages is monophyletic under a two-species neutral coalescent mode
295 While viruses in each shelter were generally monophyletic, we observed some gene flow between them.
296 , Pseudomonadales, or Oceanospirillales were monophyletic; we obtained strong support for clades that
297 tial VP1 sequences of each CVB serotype were monophyletic with respect to serotype, as were the VP4-V
298 apezoideus as currently circumscribed is non-monophyletic, with its former species belonging to six o
299 The prevailing view is that ratites are monophyletic, with the flighted tinamous as their sister