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1 because most disease-associated variants are non-coding and functional characterization of these sign
3 11265259 and rs181704186), both of which are non-coding and more common in individuals of African anc
4 istant nucleotide variants covary, including non-coding and ORF1ab sites covarying with the D614G spi
6 association studies (GWAS) are predominantly non-coding and typically attributed to altered regulator
8 acterial transcriptomic data commonly ignore non-coding but functional elements e.g. small RNAs, long
12 data reveal how expression variation through non-coding cis variation at FLC has enabled Arabidopsis
16 y genes, we find a significant enrichment of non-coding constraint mutations in the neighborhood of 7
17 also identify 1776 other genes enriched for non-coding constraint mutations with likely regulatory p
18 e than 98% of the human genome is made up of non-coding DNA, but techniques to ascertain its contribu
19 can support more and larger genes, far more non-coding DNA, greater regulatory complexity, and thous
23 mapped many protein-coding drivers, yet few non-coding drivers are known because genome-wide discove
24 enome contains arrays of extremely conserved non-coding elements termed genomic regulatory blocks (GR
29 es isoform-resolved annotation of coding and non-coding functional domains, motifs, and sites, in com
30 iscovered recurrent SVs targeting coding and non-coding functional elements known to promote prostate
31 Efficient translational bypassing of a 50-nt non-coding gap in a phage T4 topoisomerase subunit gene
32 lls for targeted discovery and validation of non-coding gene variants affecting gene expression and d
33 iants that drive cancer are less frequent in non-coding genes and regulatory sequences than in protei
35 sed INFERence of the molecular mechanisms of NOn-coding genetic variants (SparkINFERNO), a scalable b
37 e vast majority of these variants lie in the non-coding genome, where they likely function through in
38 lable bioinformatics pipeline characterizing non-coding genome-wide association study (GWAS) associat
45 ole in GBM, underscoring the need to connect non-coding genomic variation to biological function and
46 omerase reverse transcriptase (TERT) and the non-coding human telomerase RNA (hTR), which serves as a
48 g), in addition to four uncharacterized long non-coding (lnc) RNA genes and part of a novel protein-c
49 n of VINR, a Drosophila VSR-interacting long non-coding (lnc) RNA that activates non-canonical innate
50 w material for the evolution of diverse long non-coding (lnc) RNAs by non-adaptive mechanisms, such a
51 sed with transcription units specifying long non-coding (lnc) RNAs, there are many opportunities for
52 ormation about under-studied genes including non-coding lncRNAs, (ii) replying to requests for inform
53 These results suggest that a large number of non-coding loci affect the development and progression o
61 ulti-faceted pathway and network analyses of non-coding mutations across 2583 whole cancer genomes fr
62 however the true extent of how such somatic non-coding mutations affect RNA splicing are largely une
63 cer genes and mechanisms that are altered by non-coding mutations and offer insights into additional
64 r types, we integrated genes with coding and non-coding mutations and revealed frequently mutated pat
67 annotating the splicing impact of coding and non-coding mutations in future large-scale analyses.
70 tions in this cohort, and samples containing non-coding mutations in well-known RNA splicing factors
71 ations suggests that splice sites created by non-coding mutations interact with pre-existing potentia
72 this cohort, we identify 93 genes harboring non-coding mutations that cluster into several modules o
73 nd 9494 cases with WES data, discovering 562 non-coding mutations that lead to splicing alterations.
74 al patterns of somatic mutations, especially non-coding mutations, and their roles in defining molecu
75 haracterized and only a handful of recurrent non-coding mutations, most notably TERT promoter mutatio
76 facilitate the identification of functional non-coding mutations, we present dbInDel, a database whe
77 esses had variable proportions of coding and non-coding mutations, with chromatin remodeling and prol
78 ly whole-genome sequencing (WGS) to identify non-coding mutations, with regulatory potential in GBM,
81 Using both coding (beta-actin mRNA) and long non-coding (NEAT1) RNAs, we show that the Mango array do
84 low for both the identification of candidate non-coding pathogenic variants and their functional vali
85 xbp-1 mRNA bifurcates it into a coding and a non-coding pathway; modulation of the two pathways may a
87 ease-associated risk loci are located in the non-coding region of the genome and therefore, their tar
88 r point mutations and structural variants in non-coding regions across 2,658 genomes from the Pan-Can
89 e proportion of risk variants are located in non-coding regions and remain unexplained by current exp
90 ied our MGW-prioritization approach to three non-coding regions associated with systemic lupus erythe
91 specific HLA peptides derived from annotated non-coding regions could elicit anti-tumor immune respon
94 results uncover a function for ribosomes on non-coding regions of RNAs and reveal the mechanisms und
97 r understanding of the rules that govern the non-coding regions of the genome is less complete than o
98 ion factors, other protein coding genes, and non-coding regions of the genome with regulatory potenti
99 For somatic point mutations in coding and non-coding regions of the genome, we propose CScape-soma
101 crucial role in the study of the effects of non-coding regions on the molecular classification of ca
102 graphical reports are offered for coding and non-coding regions that annotate the potential impact of
103 y and clinical covariates and detect loci in non-coding regions that are difficult to interpret.
104 ding those targeting intergenic and intronic non-coding regions that eluded previous exome focused st
106 eview a GRB-based approach to assign loci in non-coding regions to potential target genes, and apply
109 of the identified associated variants are in non-coding regions, and presumably influence gene expres
110 To further characterize the burdening of non-coding regions, we used NIMBus to screen transcripti
111 lanced accuracy in coding regions and 69% in non-coding regions, whereas even higher accuracy may be
116 t the majority of loci are thought to affect non-coding regulatory elements, the second question is o
117 ease have been performed, alterations in the non-coding regulatory regions of GBM have largely remain
118 tion in the CNS, elucidating the function of non-coding regulatory sequences in neurobiology and link
122 and establishes a framework for identifying non-coding regulatory variation with phenotypic conseque
125 egulated by the interaction between the long non-coding RNA (lncRNA) DIGIT and the bromodomain and ex
126 nt of these are located within BANCR, a long non-coding RNA (lncRNA) exclusively expressed in primate
130 RNA myeloid-specific 1 (HOTAIRM1) is a long non-coding RNA (lncRNA) that plays a pivotal role in reg
131 ide Metabolism Regulator (lincNMR) is a long non-coding RNA (lncRNA) which is induced in hepatocellul
134 ng, we systematically annotated multi-exonic non-coding RNA (mencRNA) genes transcribed from 1.5-Mb i
135 xbp-1 mRNA cleavage is a biologically active non-coding RNA (ncRNA) essential for axon regeneration i
139 CREs could be identified by context-specific non-coding RNA (ncRNA) profiling, based on the observati
140 r genes, virus-host interactions involved in non-coding RNA (ncRNA), target gene and microRNA express
141 om the screen, progenitor renewal associated non-coding RNA (PRANCR), using RNA interference-mediated
142 Recent studies have demonstrated sperm small non-coding RNA (sncRNA) populations vary in response to
144 ntibodies interact with beta-amyloid, a long non-coding RNA AC099552.4 (p = 1.2 x 10(-7)), and a zinc
146 C across hundreds of residues in rRNA, tRNA, non-coding RNA and mRNA from hyperthermophilic archaea.
147 analysis of leukocyte RNA we found that long non-coding RNA and, to a lesser extent, small non-coding
152 n of PPARalpha directly upregulates the long non-coding RNA gene Gm15441 through PPARalpha binding si
153 and global annotation of protein-coding and non-coding RNA genes in a manner orthogonal to gene expr
154 d across all cohorts was located in the long non-coding RNA growth arrest specific five gene (GAS5) (
155 presents a paradigm for the function of long non-coding RNA in epigenetic regulation, although how it
156 se H-mediated cleavage, splicing modulation, non-coding RNA inhibition, gene activation and programme
158 sed modulation of a triple helix in the long non-coding RNA metastasis-associated lung adenocarcinoma
159 ional study of EV-mediated transfer of small non-coding RNA molecules at single-cell resolution.
162 dependent tool evaluates pre-processed small non-coding RNA sequencing (sncRNA-seq) data, i.e. expres
164 ato spindle tuber viroid (PSTVd), a circular non-coding RNA that replicates and spreads systemically
165 on-coding RNA and, to a lesser extent, small non-coding RNA were significantly altered in sepsis rela
167 h CIZ1, including interaction with XIST long-non-coding RNA, epigenetic maintenance and regulation of
169 ong non-coding RNA expression, but not small non-coding RNA, was largely recapitulated in human endot
174 enes (2.94-fold), GWAS loci (1.52-fold), and non-coding RNAs (1.44-fold), compared with random distri
175 how that the mutation and regulation of long non-coding RNAs (lncRNAs) are associated with various hu
177 ein-coding genes, the majority of human long non-coding RNAs (lncRNAs) are considered non-conserved.
184 known ASD risk genes code for proteins, long non-coding RNAs (lncRNAs) as essential regulators of gen
190 o identify binding proteins of specific long non-coding RNAs (lncRNAs) in the native cellular context
191 the targeting and spreading patterns of long non-coding RNAs (lncRNAs) on chromatin requires a techni
192 As ncRNAs such as microRNAs (miRNAs), long non-coding RNAs (lncRNAs) or circular RNAs (circRNAs) ca
195 of multi-protein DNA complexes, so how long non-coding RNAs (lncRNAs) regulate DNA repair is less we
196 is transcribed and that there are more long non-coding RNAs (lncRNAs) than protein coding genes, sev
197 alian genome is transcribed, generating long non-coding RNAs (lncRNAs) that can undergo post-transcri
200 expression of LRRK2 and two long intergenic non-coding RNAs (lncRNAs), LINC02555 and AC079630.4, in
204 rates, while rRNA, tRNA, and other conserved non-coding RNAs (ncRNAs) are excluded from these bodies.
208 (DMD) is a surveillance pathway for certain non-coding RNAs (ncRNAs) including ribosomal RNAs (rRNAs
210 conserved between mouse and human XIST long non-coding RNAs and defined protein communities whose bi
211 gene transcripts, separating short and long non-coding RNAs and predicting circular RNAs from other
212 R, that automates the discovery of expressed non-coding RNAs and UTRs from RNA-seq reads mapped to a
216 n be achieved in three steps: distinguishing non-coding RNAs from protein coding gene transcripts, se
220 We find that alignments for several long non-coding RNAs previously shown to lack covariation sup
221 ing of EVs identifies diverse RBPs and small non-coding RNAs requiring the LC3-conjugation machinery
222 lasma contains > 40,000 different coding and non-coding RNAs that are potential biomarkers for human
233 chromosomes are active and express the long non-coding RNAs X active coating transcript (XACT) and X
234 m of m(6)A modifications (in both coding and non-coding RNAs) in cancer pathogenesis and drug respons
235 gth, mature tRNAs and other structured small non-coding RNAs, and less abundant tRNA fragments and ma
236 lysis of changes in genome methylation, long non-coding RNAs, circular RNAs, micro-RNAs and fruit met
237 most eukaryotic pre-messenger RNAs and long non-coding RNAs, introns are removed through the process
238 ch of these genes, either coding proteins or non-coding RNAs, is or are responsible for DFNA58 HL.
239 found not only in messenger RNAs but also in non-coding RNAs, m(6)A affects the fate of the modified
240 processed for EXO-NGS, we observed two long non-coding RNAs, malat-1 and CRNDE to be variably expres
241 ied three highly abundant HHV-6 encoded long non-coding RNAs, one of which generates a non-polyadenyl
242 sequence-divergent but structurally related non-coding RNAs, share RNP networks and that network hub
243 transcription factor binding motifs and long non-coding RNAs, that potentially contribute to organoge
244 modification and chromatin remodelling, and non-coding RNAs, the manipulation of these mechanisms is
257 to cis-regulatory elements (CREs), which are non-coding segments of DNA that spatially and temporally
259 ed by genome-wide association studies map to non-coding sequence and their tissue-specific effects in
260 how emerging findings regarding the role of non-coding sequence variation offer opportunities for un
262 Our results shed light on the importance of non-coding sequences in the evolution of the S-locus, an
263 Small non-coding RNAs (ncRNAs) are short non-coding sequences involved in gene regulation in many
264 llion people, with risk variants enriched in non-coding sequences near chondrocyte genes, loci that l
265 thin 3'UTRs that results in species-specific non-coding sequences that may contribute to bacterial di
268 the other hand, allows for identification of non-coding somatic variation and expanded estimation of
269 U1 snRNP (U1), vertebrates' most abundant non-coding (spliceosomal) small nuclear RNA, silences pr
272 t cis-sQTL for the alternative splicing of a non-coding transcript of EPB41L4A, called EPB41L4A-203.
273 In addition, the level of Per2AS, a novel non-coding transcript that is expressed at the Period 2
275 pe, Gr and r mutant fruits at the coding and non-coding transcriptomic, metabolomic and genome methyl
276 al surveillance whereby only a subset of the non-coding transcripts is allowed to attain sufficient s
277 In this work, we annotated viral mRNAs and non-coding transcripts, and a large number of transcript
282 nd functionally validated a novel pathogenic non-coding variant in a small family with a previously u
283 ting eQTLs in the DGRP, including one common non-coding variant that lowers enteric infection suscept
289 o the regulatory role of enhancer-associated non-coding variants in cancer epigenome, and to facilita
291 only, coding alteration only, or coding plus non-coding variants in experimentally predicted regulato
298 lements (RE) and genes perturbed by acquired non-coding variants, here we establish epigenomic and tr
299 nally, our study emphasizes the relevance of non-coding variation in genetic studies of complex disea
300 es (DEGs), including both protein-coding and non-coding, were detected in astrocytes, oligodendrocyte