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1 que mutations were detected, of which 7 were nonsynonymous.
5 s in the major capsid protein (VP2) gene are nonsynonymous, altering amino acid residues that fall wi
7 ism (SNP) in the coding region resulted in a nonsynonymous amino acid substitution in the CsSGR prote
12 l of 122 rare (minor allele frequency <0.5%) nonsynonymous and splice-site variants in 2 arrhythmia s
15 were used to estimate the absolute rates of nonsynonymous and synonymous substitutions for different
18 5E-56; rs148178887, p = 1.13E-36) were rare, nonsynonymous, and predicted to be damaging or deleterio
19 st, P = 6.2 x 10(-14)), and have a 30% lower nonsynonymous APOBEC3 mutation burden compared to contro
20 ss responses; recent J99 isolates harbored 2 nonsynonymous arsS mutations, and arsS inactivation abol
23 ination in cagY, but we also found indels or nonsynonymous changes in 13 other essential cagPAI genes
24 trast, only two relapse patient isolates had nonsynonymous changes in ATP synthase subunit c (atpE),
25 these genes: extreme polymorphism, excess of nonsynonymous changes in peptide-binding domains, and lo
26 tory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to
27 pped, and amino acid variants resulting from nonsynonymous changes were analyzed based on the seconda
28 s of liver-specific heteroplasmies involving nonsynonymous changes, most of which are predicted to ha
30 redicted to disrupt miRNA binding and induce nonsynonymous coding changes in genes previously associa
31 5 x 10(-6)), and a suggestive association of nonsynonymous coding rare variation in the gene PTPRO (P
33 usceptibility gene, and mouse strains with a nonsynonymous coding single-nucleotide polymorphism (SNP
36 in 24 discordant sibling pairs identified 17 nonsynonymous coding variants, of which 1 located in SMA
38 significantly enriched for genes that harbor nonsynonymous de novo mutations in patients with epilept
41 this explanation suggests that the prevalent nonsynonymous editing in coleoids is generally nonadapti
44 nced, revealing only seven shared SNPs (four nonsynonymous) for R and Morgan strains compared to Shei
47 ulted in a selective bottleneck that reduced nonsynonymous genetic diversity in the viral hemagglutin
48 (population minor allele frequency below 1%) nonsynonymous genetic variants in 38 genes were shared b
49 rlap with the discovery cohort in the set of nonsynonymous genetic variants observed in the NKPD1 gen
50 mutated in de novo AML, we identified rare, nonsynonymous germ line variants in 4 genes, each segreg
51 subcohorts of families where probands lacked nonsynonymous germline mutations, especially in genes in
54 the extended pedigree and identified a novel nonsynonymous homozygous mutation in exon 9 of the WIPI2
55 ee substitutions (one synonymous in PB2, one nonsynonymous in M and PA each) were specifically enrich
60 we present evidence in mice and humans that nonsynonymous mtDNA mutations can arise and become enric
61 nsense mutations, and PLCG1 with a recurrent nonsynonymous mutation (R707Q) in the highly conserved a
62 d, recombinant Hb mutants demonstrate that a nonsynonymous mutation at a CpG dinucleotide in the beta
65 ast Saccharomyces cerevisiae We identified a nonsynonymous mutation in the DIG2 gene as a cQTL for th
68 detected driver genes by testing whether the nonsynonymous mutation rate was significantly higher tha
70 nt studies have suggested that the number of nonsynonymous mutations (NsM) can be used to select mela
71 by current agents or a burden of exome-wide nonsynonymous mutations (NsM) that exceed a proposed thr
72 following passage allowed us to identify the nonsynonymous mutations (S460L alone and I212V-S460L in
73 n of mtDNA landscapes, where the surrounding nonsynonymous mutations and variants can enhance or repr
74 om 0.01 to 0.10, indicating that over 90% of nonsynonymous mutations are eliminated by negative selec
75 r approximate the functional consequences of nonsynonymous mutations by using bioinformatic scores.
76 ions, as archaic Denisovans have accumulated nonsynonymous mutations faster than either modern humans
77 pes comprising >96.3% of all possible single nonsynonymous mutations for hydrolysis activity of an am
79 dentified 137 strains that, combined, had 37 nonsynonymous mutations in 36 codons in pbp2x Although t
81 ), respectively) of newly arising beneficial nonsynonymous mutations in humans, mice, and Drosophila
82 that 10/13 of the wild-type phi6 clones had nonsynonymous mutations in p12, and 2 others had point m
84 nd 2872 controls revealed significantly more nonsynonymous mutations in the ASD population, and ident
85 cally significant 3.1-fold enrichment of the nonsynonymous mutations in the Caucasian LOAD cases comp
88 (XLT), a bleeding disorder, both arise from nonsynonymous mutations in WAS, which encodes a hematopo
90 odels exhibited, respectively, 0.02 and 0.07 nonsynonymous mutations per megabase, a dramatically low
91 er the exclusion of synonymous mutations and nonsynonymous mutations previously associated with susce
92 ing each individual or combinations of these nonsynonymous mutations remained sensitive to UV-4B trea
93 ent environmental changes in nature, causing nonsynonymous mutations that are beneficial at one time
94 V-1-infected individuals is typically due to nonsynonymous mutations that change the protein sequence
95 wn resistance-associated mutations and other nonsynonymous mutations that have not been implicated in
96 In Africa, we observed a broad array of rare nonsynonymous mutations that were not associated with de
97 mitochondrial mutations, there were too few nonsynonymous mutations to cause generalized mitochondri
101 te: an enrichment of positive Tajima's D for nonsynonymous mutations, an excess of polymorphism, and
102 mples from patients with SS did not show any nonsynonymous mutations, but read-depth analysis suggest
103 y reduced genetic diversity and an excess of nonsynonymous mutations, consistent with severe genetic
104 the VGSC led to detection of two additional nonsynonymous mutations, Ile10148Asn and Ser1156Gly.
105 ooking skin biopsies identified five somatic nonsynonymous mutations, independently present in cis wi
106 s identified by tNGS were KDR with different nonsynonymous mutations, MLL2 with different nonsense mu
107 Sequencing of the variant identified seven nonsynonymous mutations, PB1-E51K, PB1-I171V, PA-N350K,
109 s from Piccard are significantly enriched in nonsynonymous mutations, suggesting stronger purifying s
114 variant of human ZnT8 arising from a single nonsynonymous nucleotide change contributes to increased
115 y conditions typically show a higher rate of nonsynonymous nucleotide changes than the rate of synony
116 ana accessions, AtDDF2 has a higher level of nonsynonymous nucleotide diversity compared with AtDDF1.
117 high similarity to reductase, where a single nonsynonymous nucleotide substitution at GVS1 mediates t
120 iduals exhibited a significant enrichment of nonsynonymous nucleotide variation, an observation consi
122 dataset exhibited NER alterations, including nonsynonymous or splice site mutations and homozygous de
123 llelic (homozygous or compound heterozygous) nonsynonymous or splice-site variations in 6 cardiomyopa
125 yses to determine whether a gain-of-function nonsynonymous OXTR SNP interacted with early stress to i
126 superfamily member 2 (TM6SF2) rs58542926 C/T nonsynonymous (p.Glu167Lys) variant in genetic susceptib
127 amed "swingshift" (swst, MGI:3611216) with a nonsynonymous point mutation (N68S) in Fah that caused a
128 he SLC10A1 gene revealed a single homozygous nonsynonymous point mutation in the coding sequence of t
130 ociated idiosyncratic DILI with rs2476601, a nonsynonymous polymorphism that encodes a substitution o
137 of the efficiency of natural selection, the nonsynonymous relative to the synonymous nucleotide site
139 onstrated the effects of several cross-tumor nonsynonymous RNA editing events on cell viability and p
140 significant enrichment of trans-acting rare nonsynonymous secondary variants in patients with BBS co
141 jor (D398) or the minor (N398) allele of the nonsynonymous single nucleotide polymorphism (SNP), rs16
143 t, we investigated the consequences of three nonsynonymous single nucleotide polymorphisms (SNPs) for
144 By screening reported data sets, 12 rare nonsynonymous single nucleotide polymorphisms (SNPs) wer
145 n has relevance for the increasing number of nonsynonymous single nucleotide polymorphisms now being
146 n chimpanzees and orangutans and found three nonsynonymous single nucleotide polymorphisms, one in ch
149 ination of the CYP2D6 region revealed that a nonsynonymous single nucleotide variant rs16947 is stron
150 A 2% to 5% background rate of rare SCN5A nonsynonymous single nucleotide variants (nsSNVs) among
152 h, termed snvForest, to prioritize candidate nonsynonymous single nucleotide variants for a specific
153 total of 13 (12/13 novel) gene fusions, 231 nonsynonymous single nucleotide variants, and 21 inserti
157 gene gain or loss, the role of pathoadaptive nonsynonymous single-nucleotide polymorphisms (nsSNPs) h
158 ain reaction-based genotyping, we identified nonsynonymous single-nucleotide polymorphisms (SNPs) in
159 nd 328 healthy controls were genotyped for 9 nonsynonymous single-nucleotide polymorphisms (SNPs) in
161 nd 328 healthy controls were genotyped for 4 nonsynonymous single-nucleotide polymorphisms in TLR10,
165 evolved at recurrence, with less than 8% of nonsynonymous single-nucleotide variants being shared in
166 -Finnish) Europeans have significantly fewer nonsynonymous singletons in Online Mendelian Inheritance
167 to estimate unfolded SFSs for synonymous and nonsynonymous sites in a population of Drosophila melano
169 nd cuttlefishes), with a greater fraction of nonsynonymous sites than synonymous sites subject to hig
173 C_Os07g11020 and LOC_Os07g11520 indexed by a nonsynonymous SNP mutation on exon 5 of a bHLH transcrip
175 ting is used to model putatively deleterious nonsynonymous SNPs (nsSNPs) in the mouse orthologs of fe
176 yze the effect of amino acid variants (e.g., nonsynonymous SNPs (nsSNPs)) for a user's protein sequen
178 of the DNA polymorphisms revealed that 2347 nonsynonymous SNPs and 51 frameshift mutations could dif
180 chanistic explanation for the observation of nonsynonymous SNPs in fnbA among clinical isolates of S.
182 ization identified phenotypically meaningful nonsynonymous SNPs in the ICP4, UL41 (VHS), UL42, UL46 (
183 ression was used to identify MPWL-associated nonsynonymous SNPs in the UL1 (gL), UL2, UL4, UL49 (VP22
185 Chromosome one SNPs included two ERICH3 nonsynonymous SNPs that resulted in accelerated proteaso
188 ing lower fitness levels included 123 unique nonsynonymous SNPs, including three located in genes (ly
189 using 1000 Genomes Project data identified 7 nonsynonymous SNPs, which are in moderate to high linkag
191 ntify a novel association of a low-frequency nonsynonymous SNV in GLP1R (A316T; rs10305492; MAF=1.4%)
192 We estimate that the fraction of deleterious nonsynonymous SNVs is higher than previously reported; q
193 re, we show that the fraction of deleterious nonsynonymous SNVs is significantly higher for Mendelian
194 tructure and interaction data to interrogate nonsynonymous somatic cancer mutations, identifying a se
195 cognize mutational antigens corresponding to nonsynonymous somatic mutations (NSSMs), and in some cas
196 ) methodology by inspecting over 2.5 million nonsynonymous somatic mutations derived from 6,789 tumor
197 ncer-associated gene, defined as two or more nonsynonymous somatic mutations in the same gene and tum
200 s, P = 4.0 x 10(-4)), increased frequency of nonsynonymous SSNVs in Pan-Cancer genes (mean 1.4 vs. 0.
201 GBF1) also demonstrated an increase in rare nonsynonymous, stop, and/or splice mutations in cases co
202 entified 69 genes with predicted deleterious nonsynonymous, stop, or splice variants that segregated
203 lele frequency <1%) potentially deleterious (nonsynonymous, stop-gain, splice) variants (n = 2,398 fo
204 utative tail fiber proteins are enriched for nonsynonymous strain variation compared to other genes,
205 pping of one these mutants revealed an R240C nonsynonymous substitution in the activation loop of a r
208 , we measured the per-genome accumulation of nonsynonymous substitutions across diverse pairs of popu
209 the local density of coding sites as well as nonsynonymous substitutions and positively correlated wi
210 urthermore, we have discovered that in CBSV, nonsynonymous substitutions are more predominant than sy
211 ious burden in sorghum, showing that ~33% of nonsynonymous substitutions are putatively deleterious.
212 population and estimate that at least 20% of nonsynonymous substitutions between humans and an outgro
213 found a transmembrane-skewed distribution of nonsynonymous substitutions between the two species, thr
214 nthetic metabolism have lower synonymous and nonsynonymous substitutions rates than those involved in
217 ineage contained a relatively high number of nonsynonymous substitutions, and viruses in this lineage
218 tivity permits some otherwise harmful G-to-A nonsynonymous substitutions, because the As are edited t
221 We found numerous differences in diversity, nonsynonymous/synonymous substitution rates, and recombi
222 erved that amino acids in Parkin targeted by nonsynonymous T1R-risk mutations were also enriched for
223 Of the 12 nucleotide differences, six were nonsynonymous; these were engineered into a new molecula
224 dentified within each virus and the ratio of nonsynonymous to synonymous (dN/dS) substitutions of min
226 e selection pressures (measured as ratios of nonsynonymous to synonymous evolutionary changes [dN/dS
227 elihood convergence and/or elevated ratio of nonsynonymous to synonymous nucleotide substitution rate
229 eotide polymorphisms (SNPs) and the ratio of nonsynonymous to synonymous SNPs compared to findings in
230 M. tuberculosis within Nunavik: The ratio of nonsynonymous to synonymous substitution rates (dN/dS) w
231 ein sequence level, measured as the ratio of nonsynonymous to synonymous substitution rates, and micr
234 ribution of fitness effects and the ratio of nonsynonymous to synonymous variants suggest that purify
236 of population differentiation, and a higher nonsynonymous-to-synonymous substitution ratio than the
238 e-exome sequencing identified a heterozygous nonsynonymous variant (c.2324C > T) in the Toll-like rec
240 e sequencing we now identified a single rare nonsynonymous variant (SNV) rs142946965 [p.R215I] in ADA
241 ino acid position 492 (p.C492Y), as the only nonsynonymous variant cosegregating with vibratory urtic
244 1 is in high linkage disequilibrium with the nonsynonymous variant in SCN10A, rs6795970 (V1073A, r(2)
245 ecting STARD9, while another carried a novel nonsynonymous variant in SEMA6D together with a rare sto
246 caused by recurrent somatic mosaicism for a nonsynonymous variant in SMO (c.1234C>T [p.Leu412Phe]),
247 ted with multiple phenotypes; for example, a nonsynonymous variant in the zinc transporter SLC39A8 in
253 ple height-increasing rare and low-frequency nonsynonymous variants (SLC27A3 and CYP26B1; P(SKAT-O) <
254 sequencing with 180 x coverage identified 24 nonsynonymous variants and 2 frameshift deletions in CHR
255 e observed three new genome-wide significant nonsynonymous variants associated with Alzheimer's disea
257 e also observed a significant excess of rare nonsynonymous variants exclusive to EA smokers in NRXN1,
258 A model qualifying ultrarare, deleterious, nonsynonymous variants implicated TERT and RTEL1, and a
260 rmine the inheritance patterns of ultrarare, nonsynonymous variants in 99 sudden death-susceptibility
263 s and controls identifies six eBL-associated nonsynonymous variants in EBNA1, EBNA2, BcLF1, and BARF1
264 s that contained a significant enrichment of nonsynonymous variants in genomes of healthy individuals
266 at extremes of lipid traits, we identified 2 nonsynonymous variants in low-density lipoprotein recept
271 enome-wide association study identifying six nonsynonymous variants in the genes EBNA1, EBNA2, BcLF1,
272 chain (IGH) locus centring on a haplotype of nonsynonymous variants in the IGHV4-61 gene segment corr
273 this review we analyze the pathogenicity of nonsynonymous variants in the newly discovered gene enco
277 Accurate deleteriousness prediction for nonsynonymous variants is crucial for distinguishing pat
278 frequency filtering approaches identified 55 nonsynonymous variants strongly associated with resistan
279 associations were mainly driven by pLOF and nonsynonymous variants that are unique or highly enriche
280 e many predicted loss-of-function (pLOF) and nonsynonymous variants that were highly enriched or priv
284 ing solely at coding variants, a total of 28 nonsynonymous variants were identified and replicated in
286 g Pathogenicity, and mode of Inheritance for Nonsynonymous variants), a prediction method which utili
287 ng variants (splicing, stop-gain, stop-loss, nonsynonymous variants, or indels) in CLCN6 were associa
288 positive prediction rate for benign yet rare nonsynonymous variants, which demonstrated the value of
291 rformed a gene-based association analysis of nonsynonymous variation captured using exome-sequencing
295 here major association signals correspond to nonsynonymous variation, we summarize studies defining t
297 9-3T>G) in 2 unrelated patients as well as 3 nonsynonymous variations in this gene (p.G257R, p.R323Q,
300 III half-life, and the rare or low-frequency nonsynonymous VWF variants p.(Arg826Lys) and p.(Arg852Gl