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1 thereby impacts the identity of the incoming nucleotide.
2 methylation on the ribose of the penultimate nucleotide.
3 rporation by PrimPol is dependent on the n-1 nucleotide.
4 crobes, and dephosphorylates proinflammatory nucleotides.
5 A interactions spanning tens of thousands of nucleotides.
6 for high-affinity binding of the initiating nucleotides.
7 linked to specific genes and even individual nucleotides.
8 larger features such as entire residues and nucleotides.
9 ds on different substrates, including cyclic nucleotides.
10 widely from 5,386 ( X174) to 6,067 (alpha3) nucleotides.
13 interactions with flipped non-template (NT) nucleotides "AAGT" at -4 to -1 positions of the DNA prom
16 closing and opening typically occurs in each nucleotide addition cycle in transcription elongation.
17 tial-transcription pausing can occur in each nucleotide addition during initial transcription, partic
18 long templates, and this has shown that RdRp nucleotide addition kinetics is stochastically interrupt
19 xible element of the active site involved in nucleotide addition, can stimulate translesion RNA synth
21 otation from the RefSeq is mapped based on a nucleotide alignment of the full sequence to a covarianc
22 translating long error-prone reads from the nucleotide alphabet into the alphabet of repeat units.
23 of assembling centromeres from reads (in the nucleotide alphabet) into a more tractable problem of as
24 f the conjugated DNA was varied from 5 to 30 nucleotides, altering the zeta potential of the detectio
25 ent 'levels' of viral genome representation: nucleotide, amino acid, amino acid properties and protei
26 PC population dynamics has mostly relied on nucleotide analog incorporation that does not label quie
28 We show that, in difference to resistance to nucleotide analogs, which is mainly associated with few
29 ession; indeed, alterations in extracellular nucleotide and adenosine signalling determine outcomes o
30 NA that modulates the position of the coding nucleotide and thereby impacts the identity of the incom
33 upied by polytracts, and 0.47 million single nucleotides are identified as polytract hinges, i.e., br
34 athogenesis, providing examples of how these nucleotides are involved in regulating many aspects of v
37 is study underscores the selection of ribose nucleotides as second messengers and finds its roots in
38 arboring addition or deletion of one or more nucleotides at the 5' and/or 3' ends of the canonical mi
39 d over 100 CVB3 clones harboring nine unique nucleotide "barcodes." Using this collection of barcoded
40 g and mutational analyses, we identified the nucleotide bases in the occluding mRNA 3'UTR that intera
43 trate without perturbing the equilibrium for nucleotide binding at physiological Mg(2+) concentration
44 etween multiple binding events in the cyclic nucleotide binding domains of HCN pacemaker channel.
46 ion with a citrate of crystallization at the nucleotide binding site and exhibits structural features
49 ber of the higher eukaryotes and prokaryotes nucleotide-binding (HEPN) domain-containing nuclease fam
51 ting is mediated by the intracellular cyclic nucleotide-binding domain (CNBD) connected to the pore-f
52 e-causing mutations located within the first nucleotide-binding domain (NBD1) of the cystic fibrosis
54 tion of EGFR, protease-activated receptor 2, nucleotide-binding domain, leucine-rich-containing famil
55 Here we identify epigenetic regulation of nucleotide-binding leucine rich repeat or Nod-Like Recep
56 d that narrowed the Ptr1 candidates to eight nucleotide-binding leucine-rich repeat protein (NLR)-enc
57 s, including a detailed multi-genome-derived nucleotide-binding leucine-rich repeat protein repertoir
58 ptides) activate innate immune cells through nucleotide-binding oligomerization domain (NOD) 1 and/or
59 atory effects of the innate immune molecule, nucleotide-binding oligomerization domain-like receptors
61 se that communication between the actin- and nucleotide-binding regions of myosin assures a proper ac
63 rived from WEW, which encodes a coiled-coil, nucleotide-binding site and leucine-rich repeat protein
64 plants, on top of existing phytohormone and nucleotide-binding-leucine-rich-repeat (NLR) networks, t
65 th proteins involved in inhibition of purine nucleotide biosynthesis and with GTPases that control ri
66 BAP1 mutant UM cells utilize glycolytic and nucleotide biosynthesis pathways, whereas OXPHOS(low) BA
68 al responses could be identified for several nucleotides by 1-dimensional (1D) imino (1)H NMR as well
69 nal functionalities, ranging from individual nucleotide changes that increase efficiency of on-target
72 ergoes a conformational change at the higher nucleotide concentration, which allows DnaA oligomerizat
73 ast kinesin-8, Kip3, under varying loads and nucleotide conditions using high-precision optical tweez
74 ctors, compartmentalized signaling of cyclic nucleotides confers specificity to extracellular stimuli
75 variants; and a model that includes extended nucleotide contexts (e.g. surrounding 3 bases on either
76 that can load structures with over 1 million nucleotides, create videos from simulation trajectories,
79 Ras superfamily of small GTPases are guanine-nucleotide-dependent switches essential for numerous cel
80 ction, and it has been suggested that purine nucleotide depletion, or accumulation of other toxic pur
82 moter-proximal pause (PPP) sites located ~60 nucleotides downstream of the transcriptional start site
83 ific driver gene mutations, such as the four-nucleotide duplication in the oncogene nucleophosmin (NP
84 the prebiotic formation of the components of nucleotides-either via the synthesis of ribose and the c
86 iro[4,4]nonane nucleus to target the guanine nucleotide exchange activity of DOCK5, which is essentia
87 rent classes and either stimulate or inhibit nucleotide exchange depending on the G-protein subtype.
88 aluated the structure and stability, guanine nucleotide exchange factor (GEF) and GTPase-activating p
89 ly, expression of a single gene, Rap guanine nucleotide exchange factor 3 (Rapgef3), was strongly up-
91 RET technique enables the linking of guanine nucleotide exchange factor-induced Eu(3+)-GTP associatio
92 es can generate patterns by coupling guanine nucleotide exchange factors (GEF) to effectors, generati
93 The synaptic Ras homologous (Rho) guanine nucleotide exchange factors (GEFs) Kalirin and Trio have
94 the RAS interaction with activating guanine nucleotide exchange factors (GEFs) or receptor tyrosine
95 s, are controlled by 145 multidomain guanine nucleotide exchange factors (RhoGEFs) and GTPase-activat
96 d ligation assay, BioID, to identify guanine nucleotide exchange factors that activate Cdc42 in immor
97 Upon growth factor stimulation, the guanine-nucleotide exchange modulator dissociates Galphai*betaga
98 tion observed for Galpha(i), DAPLE inhibited nucleotide exchange on Galpha(s) and Galpha(q) These fin
99 ts that would engage eIF2alpha during active nucleotide exchange, thereby discouraging both binding e
100 inding to Galpha(s) and Galpha(q) Unlike the nucleotide-exchange acceleration observed for Galpha(i),
106 duct DDB2 (damaged DNA binding protein 2), a nucleotide excision repair protein, is upregulated by hy
107 roles in cells including an association with nucleotide excision repair, base excision repair, mismat
109 brief primer on the biological synthesis of nucleotides, followed by an extensive focus on the prebi
110 nly amino acids, but sugars, fatty acids and nucleotides for biosynthesis, conferring resistance to t
111 e present a crystal structure of BchL in the nucleotide-free form where a conserved, flexible region
113 molecular dynamics simulations on EMB in its nucleotide-free state and a derivative homology model co
116 s implicate both Brugia osm-9 and the cyclic nucleotide-gated (CNG) channel subunit tax-4 in larval c
117 s of both hyperpolarization-activated cyclic nucleotide-gated (HCN) and small conductance calcium-act
118 r the hyperpolarization-activated and cyclic nucleotide-gated channel HCN2 in the family of so-called
119 posed for hyperpolarization-activated cyclic nucleotide-gated channels(5), and may represent an unexp
121 Support for chemically modified residues and nucleotides has been significantly improved along with t
122 structural features in the enzyme, such as a nucleotide hydrolysis site or multiple intermediate conf
124 entification using 16S rRNA gene and average nucleotide identity, 2) determination of virulence facto
125 dividual genomes based on reciprocal average nucleotide identity, we refer to groups circumscribed in
127 ing step in the de novo synthesis of guanine nucleotides, impacting the cellular pools of GMP, GDP an
128 g often model the targeting probability of a nucleotide in a motif-based fashion, assuming that the s
129 s technique which allows the addition of one nucleotide in a one-pot reaction of sequential coupling,
130 ds or n-grams in language, or amino acids or nucleotides in bioinformatics, are generally represented
133 nsive investigation of the importance of NTR nucleotides in the context of the entire nairovirus repl
134 TNA sequences with a preference for C and G nucleotides in the immediately flanking 5' and 3' region
139 established that cooperative binding between nucleotides inside a CA hexamer cavity results in energe
148 s largely a function of being intractable to nucleotide-mediated excision compared with similar nucle
150 mechanisms that regulate mRNA fate, covalent nucleotide modification has emerged as a major way of co
151 cytosines (m(5) C) is a post-transcriptional nucleotide modification of RNA found in all kingdoms of
152 ms a key step of de novo characterization of nucleotide modifications, shedding light on the interpre
153 steric gating and regulation of CN-gated and nucleotide-modulated channels and CNG channel-related ch
155 e departure, through the mobile arch, of the nucleotide monophosphate product from the catalytic site
156 ated in diet bioassay, which showed a single nucleotide mutation can have a significant impact or abo
157 G-I signaling less effective, whereas single nucleotide mutation of m(6)A consensus motif of viral RN
159 form to build and test every possible single nucleotide mutation within the PTC-ring, A-loop and P-lo
160 are useful markers in cancer studies, single-nucleotide mutations are equally important, both in canc
164 ome the limitations of introducing modifying nucleotides, often required to derive phasing informatio
168 ivery is based on the premise that 5'-and 3'-nucleotide overhangs negate Cas9/sgRNA catalytic activit
169 ing protein DksA, together with the alarmone nucleotides (p)ppGpp, mediates the stringent response to
170 heterogeneity requires the production of the nucleotides (p)ppGpp, which we show are sufficient to in
172 found that a prevalent nonsynonymous single-nucleotide polymorphism (C/T, rs2034310) of the human CD
173 ne microsatellite markers and > 9,000 single nucleotide polymorphism (SNP) markers generated using th
174 ort suggested that the rs73185306 C/T single-nucleotide polymorphism (SNP) represents a favorable pre
177 ogy has made it practical to estimate single-nucleotide polymorphism (SNP)-heritability among distant
178 encing coverage to detect significant single nucleotide polymorphism (SNP)-trait associations, which
180 , addresses this issue by aggregating single nucleotide polymorphism associations to nearest genes.
182 nce among individuals, and decomposes single-nucleotide polymorphism effects as either additive, part
183 Patients were genotyped for rs4680, a single nucleotide polymorphism of COMT, and randomly allocated
185 entified optimal prediction with a 44 single-nucleotide polymorphism score and cutoff at the 30th per
186 f Yp pagP gene sequences identified a single-nucleotide polymorphism that results in a premature stop
187 e the first node is one specific SNP (Single Nucleotide Polymorphism) variant and the end is disease
188 ioid receptor gene, notably the A118G single nucleotide polymorphism, have been linked to individual
190 y, which may be due to non-synonymous single nucleotide polymorphisms (nsSNPs) within the AT1R gene.
191 continuous evolution with over 10,000 single nucleotide polymorphisms (SNP) variants in many subtypes
193 tested the hypothesis that individual single nucleotide polymorphisms (SNPs) and gene-level variants
195 ion studies (GWAS) have identified 14 single nucleotide polymorphisms (SNPs) associated with cutaneou
196 INVENT) consortium to examine whether single nucleotide polymorphisms (SNPs) associated with GDF-15 l
198 iagnosis of FMD were genotyped for 18 single-nucleotide polymorphisms (SNPs) from 14 candidate genes.
201 mated the age of more than 45 million single-nucleotide polymorphisms (SNPs) in the human genome and
202 technology allow for the detection of single-nucleotide polymorphisms (SNPs) in the pathogen genomes
203 on their parental inbred lines using single nucleotide polymorphisms (SNPs) markers obtained via gen
204 etary adherence were genotyped for 95 single nucleotide polymorphisms (SNPs) related to energy homeos
205 s and quality control, association of single nucleotide polymorphisms (SNPs) with log-transformed FGF
206 distinct positional distributions of single-nucleotide polymorphisms (SNPs) within and outside essen
207 ssociation studies (GWAS) to identify single nucleotide polymorphisms (SNPs), associated with agronom
208 netic basis, including 1) deleterious single-nucleotide polymorphisms (SNPs), in-frame indels, and de
209 e the genomic distance was 5 or fewer single-nucleotide polymorphisms (SNPs), whereas reinfection wit
211 otein binding, it has been shown that single nucleotide polymorphisms can affect RNA secondary struct
212 dary structure, and here we show that single nucleotide polymorphisms can affect RNA-protein interact
213 ross-validation summaries out to 1000 single-nucleotide polymorphisms identified optimal prediction w
216 cific PCR targeting outbreak-specific single nucleotide polymorphisms was applied to 290 isolates, wh
218 repeats, large repeat sequences, and single nucleotide polymorphisms were identified, which are valu
220 Loci were identified as clusters of single nucleotide polymorphisms where frequencies of the polymo
221 Studies regarding the association of single nucleotide polymorphisms with AVNFH, transcriptomics, pr
228 though the impact of these contributions on nucleotide pools depends on the degree to which the memb
230 guide-complementary DNA and RNA with single nucleotide precision, greatly increasing the fractions o
233 T3-regulated RNAs and their binding sites at nucleotide resolution in intact colorectal cancer (CRC)
241 tituents attached to the 5'- and 3'-terminal nucleotides, respectively, provided insight into the ori
244 bacteria resist antibiotic lethality through nucleotide sanitization by MutTs, and in the absence of
245 ) enzymes are immune sensors that synthesize nucleotide second messengers and initiate antiviral resp
246 ella and gliding Mycoplasma We observed high nucleotide selectivity for ATP driving motor rotation, n
247 lls) express several TLRs, including TLR3, a nucleotide sensing receptor that recognizes double-stran
250 system is based on the analysis of the input nucleotide sequence using models built from curated RefS
251 was found to be 788.690 with a diversity in nucleotide sequences (0.04889 +/- S.D. 0.00468) and hapl
253 annotations, different transcript isoforms, nucleotide sequences and protein information, including
255 of infected hosts for enriching metadata in nucleotide sequences repositories like National Center o
257 and cytosine-adenine (CA) repeats in IFNG by nucleotide sequencing in 647 patients with CL caused by
258 d by the three partners of the International Nucleotides Sequencing Database Collaboration (INSDC) (C
260 indings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses an
261 transmission may arise from impaired cyclic nucleotide signalling, resulting from compromised phosph
262 scripts are processed by DICER-LIKE3 into 24-nucleotide small interfering RNAs (siRNAs) that guide RN
263 regulated by actin-binding proteins, but the nucleotide state of actin is also an important factor.
264 zed to be controlled by the conformation and nucleotide state of tubulin dimers within the microtubul
266 Simple sequence-based methods to detect nucleotide substitution variants have error rates (about
267 Cytosine base editors (CBEs) generate C-to-T nucleotide substitutions in genomic target sites without
270 p60 ring formation, and reveal an inter-ring nucleotide symmetry consistent with the absence of negat
271 p, including DNA replication, transcription, nucleotide synthesis, ribosome biogenesis and function,
272 sion decreases NADP production, PPP flux and nucleotide synthesis, while decreasing invasion in cell
273 Causal variants were enriched at conserved nucleotides, tended to have low derived allele frequency
274 e, we describe the synthesis of a photocaged nucleotide that releases guanosine within microseconds u
275 -rich stretches of generally several hundred nucleotides that are often associated with housekeeping
276 primarily through detection of extracellular nucleotides that are released by dying or infected cells
277 frequently contain tandem repeats of guanine nucleotides that can form stacked structures stabilized
278 li's 1C-metabolism, reduces the provision of nucleotides to the host, and exacerbates DNA toxicity an
282 pe exhibits a triplet involving the unpaired nucleotide U40 and the base pair A43-U66 in the GAUC/GAU
283 RNP consisting of two core components: a ~60-nucleotide U7 snRNA and a ring of seven proteins, with L
286 mplification (n = 20), FGFR2 or FGFR3 single-nucleotide variants (n = 19), or FGFR1 or FGFR3 fusions
287 ope chiefly to address this issue for single nucleotide variants (SNVs) and insertions/deletions (ind
288 Somatic mosaicism, manifesting as single nucleotide variants (SNVs), mobile element insertions, a
289 different alteration types, including single-nucleotide variants (SNVs), small insertions and deletio
290 comparison of a fixed number of core single nucleotide variants alone cannot be used to infer cross-
294 Globally, there is an enrichment of single nucleotide variants in active binding sites for TEAD4 (P
295 Williams-Beuren syndrome (WBS), while single nucleotide variants in ELN cause nonsyndromic supravalva
296 and 55 were independent BP-associated single-nucleotide variants within known BP-associated regions.
298 t trios were interrogated for de novo single-nucleotide variants/indels (dnSNVs/indels) and de novo c
300 nctions as novel chain-terminating antiviral nucleotide when misincorporated by viral RNA-dependent R