ライフサイエンスコーパス: nucleotide sequence

1 tic analysis (FINS, Forensically Informative Nucleotide Sequencing).

2 ce of host adaptation, i.e, changes in their nucleotide sequence.

3 ons just from the knowledge of the plain RNA nucleotide sequence.

4 ditionally, these models were built based on nucleotide sequence.

5 the biological signals present in the actual nucleotide sequence.

6 strate that ExsA and LcrF recognize a common nucleotide sequence.

7 hesis that ExsA/LcrF/VirF recognize a common nucleotide sequence.

8 genotype to each viral gene according to its nucleotide sequence.

9 n of T- and B-cell receptors of any specific nucleotide sequence.

10 ffect phenotypic diversity beyond changes to nucleotide sequence.

11 dify gene expression without a change in the nucleotide sequence.

12 us to assemble their complete amino acid and nucleotide sequences.

13 in their aminoacyl attachments and anticodon nucleotide sequences.

14 designed by mutating the 5'- and 3'-terminal nucleotide sequences.

15 stinct genomic types (clusters) with related nucleotide sequences.

16 We found a striking divergence of the ROP16 nucleotide sequences.

17 mate the evolutionary history of recombining nucleotide sequences.

18 airing interactions encoded in their primary nucleotide sequences.

19 erating Retroelements (DGR) systems in query nucleotide sequences.

20 by genomic aberrations, including changes in nucleotide sequences.

21 The PCR product was subjected to nucleotide sequencing.

22 A1 gene was amplified by RT-PCR, followed by nucleotide sequencing.

23 ss than one artifactual mutation per billion nucleotides sequenced.

24 containing a large number of genes with long nucleotides sequences.

25 was found to be 788.690 with a diversity in nucleotide sequences (0.04889 +/- S.D. 0.00468) and hapl

26 The results, from 16S rRNA gene nucleotide sequencing (1583 pb accession no HE861352) an

27 romatin immunoprecipitation of OmpR:FLAG and nucleotide sequencing, 43 putative OmpR binding sites we

28 ltzmann factors exp(-E(a,s 0)/RT) of all RNA nucleotide sequences a compatible with target structure

29 model for the analysis of computer-simulated nucleotide sequence alignments that were evolved with no

30 ing specificities that are not apparent from nucleotide sequence alone.

31 each neuron is labeled with a unique random nucleotide sequence-an RNA 'barcode'-which is targeted t

32 ptase polymerase chain reaction (RT-PCR) and nucleotide sequence analyses.

33 Nucleotide sequence analysis of the entire coding region

34 al-time reverse transcription-PCR system and nucleotide sequence analysis of the VP1 coding region.

35 Nucleotide sequence analysis revealed a 4-bp (AGTC) inse

36 binding strength, which is determined by the nucleotide sequence and can be tuned to cover a range of

37 urther find that the influence of underlying nucleotide sequence and chromosomal architecture differs

38 two Cas9 orthologs, we unraveled underlying nucleotide sequence and epigenetic parameters.

39 o better understand the relationship between nucleotide sequence and hepatotoxicity, a structure-toxi

40 ndscape of an RNA is highly dependent on its nucleotide sequence and molecular environment.

41 EER in the orthologous human gene, although nucleotide sequence and position were only rarely conser

42 associated type I (VAI) RNA in terms of both nucleotide sequence and secondary structure but differs

43 We describe here the complete nucleotide sequence and structure of the JMRV genome, as

44 o Cluster A because of their similar overall nucleotide sequences and genome architectures.

45 acting strain related publications, patents, nucleotide sequences and genome information from public

46 lesions in the respective strands of defined nucleotide sequences and in the genome overall.

47 This data consists of both the nucleotide sequences and per-base quality scores that in

48 annotations, different transcript isoforms, nucleotide sequences and protein information, including

49 We consider a world of nucleotide sequences and protocells.

50 g, lncRNA Jpx, have deep divergence in their nucleotide sequences and RNA secondary structures.

51 ecise classification scheme based on partial nucleotide sequences and scattered antigenic relationshi

52 oforms' inherent differential preferences of nucleotide sequences and their stoichiometry determine t

53 pecificity of oligo-probes, as well as their nucleotide sequences and thermodynamic features was perf

54 yped in our reference laboratory by means of nucleotide sequencing and extensive phylogenetic analyse

55 to have certain features, such as conserved nucleotide sequence, and in the case of protein coding D

56 exhibit high degeneracy if coded by separate nucleotide sequences, and elucidate how overlap-evoked c

57 Palindromic consensus nucleotide sequences are also found at the genomic integ

58 We found that the amino acid and nucleotide sequences are highly conserved between dogs a

59 ypically self-incompatible even though their nucleotide sequences are identical.

60 its synthesis have been identified, and the nucleotide sequences are known.

61 Periodicity in nucleotide sequences arises from regular repeating patte

62 The nucleotide sequences around the splicing donor and accep

63 It requires only nucleotide sequence as input and instantly predicts mult

64 validated this approach, which only requires nucleotide sequence as input, based on direct comparison

65 es a convolutional neural network (CNN) with nucleotide sequence as the input, and shows superior per

66 icroti AMA1 (BmAMA1) gene and determined its nucleotide sequence, as well as the amino acid sequence

67 e alternate approach of identifying genes on nucleotide sequence assemblies and generates longer prot

68 uch genomes lays in computing limitations of nucleotide sequence assembly programs (DNA assemblers).

69 d the carAB operon to examine the effects of nucleotide sequence at and near the transcription start

70 stress, telomeres are segments of repetitive nucleotide sequence at each end of a chromosome that pro

71 sociated features and also prefer particular nucleotide sequences at the point of insertion.

72 We detected nucleotide sequences attributable to Accumulibacter (16S

73 viruses (RVAs) are classified according to a nucleotide sequence-based system that assigns a genotype

74 isolation of the first A(H7N9) viruses, the nucleotide sequences became publically available.

75 replication product is tagged with a unique nucleotide sequence before amplification.

76 o characterize and correct position-specific nucleotide sequence biases fills the need to recognize a

77 The preferred 10-nucleotide sequence bound by APUM23 is present within th

78 PF/2013 strain, which is driven by the viral nucleotide sequence but not the amino acid sequence.

79 Cpf1 requires a specific nucleotide sequence, called a protospacer adjacent motif

80 lation (C(r)) properties of strings, such as nucleotide sequence can be a useful parameter for identi

81 nine-rich (G-rich) homopurine-homopyrimidine nucleotide sequences can block transcription with an eff

82 y paper folding, is able to detect a 30-base nucleotide sequence characteristic of DNA from the hepat

83 Importantly, four motifs of conserved nucleotide sequences (CNSs) were also determined, which

84 of a wide array of user-defined peptide and nucleotide sequence combinations for diverse future biom

85 possibility of scaling to large data sets of nucleotide sequences comprised of several thousand or mo

86 t advances have been made in the analysis of nucleotide sequences, computer programs for non-DNA disc

87 for XMRV infection by nested PCR assays with nucleotide sequence confirmation, Western blot assays fo

88 e with point mutations without chromosome or nucleotide sequence context bias would open the door to

89 identify sites of embedded rNMPs, study the nucleotide sequence context of these rNMPs and explore t

90 binding sites, based on binding affinity and nucleotide sequence, contribute to three of the four pha

91 r unpublished/unexplored microRNAs with high nucleotide sequence correspondence to two representative

92 determinants for mitochondrial import and 20-nucleotide sequence corresponding to the mutated region

93 submission, maintenance and presentation of nucleotide sequence data and related sample and experime

94 ral pests are limited by the small amount of nucleotide sequence data available for tephritids.

95 is a repository for the world public domain nucleotide sequence data output.

96 is a repository for the world public domain nucleotide sequence data output.

97 een years as a result of new data, primarily nucleotide sequence data, and new methods, primarily mod

98 Along with genomic nucleotide sequence data, this metadata is growing rapid

99 sing to extract local 'texture' changes from nucleotide sequence data.

100 lyses were conducted using Sanger population nucleotide sequencing data derived from blood samples fr

101 ssible to index the entire NCBI nonredundant nucleotide sequence database (a total of 109 billion bas

102 ages the data submitted to the International Nucleotide Sequence Database Collaboration (INSDC) again

103 The International Nucleotide Sequence Database Collaboration comprises thr

104 and is in compliance with the International Nucleotide Sequence Database Collaboration.

105 n an assembly submitted to the International Nucleotide Sequence Database Consortium (INSDC) and the

106 uence records submitted to the International Nucleotide Sequence Database public archives.

107 d by the three partners of the International Nucleotides Sequencing Database Collaboration (INSDC) (C

108 A four-gene (nrITS, 28S, RPB2, EF1alpha) nucleotide sequence dataset consisting of 232 Laccaria s

109 The primary nucleotide sequence, deduced amino acid sequence, and Ig

110 sion (SHAPE) analysis was performed on a 365-nucleotide sequence derived from the 5' untranslated reg

111 uses with identical amino acid sequences but nucleotide sequences derived from H/PF/2013 or PRVABC59.

112 tebrate genomes contain multiple endogenised nucleotide sequences derived from the non-retroviral RNA

113 n forest-classification model generated from nucleotide sequence descriptors identified two trinucleo

114 ature for penA types I to XXXVIII with novel nucleotide sequence designations; the full mtrR sequence

115 There were several nucleotide sequence differences between JPV-BH and JPV-L

116 To understand the roles of these nucleotide sequence differences in pathogenicity in mice

117 L-LW was attenuated in mice, indicating that nucleotide sequence differences in the L gene play a cri

118 hable serologically, although characteristic nucleotide sequences differentiate 24 genotypes.

119 our MIR172 loci in Arabidopsis, the level of nucleotide sequence divergence between A. thaliana and A

120 Nucleotide sequence diversity was uniformly low and did

121 volutionary distances (p-distances) based on nucleotide sequence diversity, and plotted the median p-

122 tal structure of Pdx1 bound to the consensus nucleotide sequence does not explain how Pdx1 identifies

123 Nucleotide sequence does not provide an answer to the qu

124 We demonstrate that, independently of its nucleotide sequence, double-stranded DNA binds to a spec

125 gone significant changes in both protein and nucleotide sequences during the past half century.

126 ombinant that contains an insertion of a 171-nucleotide sequence encoding amino acids 21 to 76 of the

127 The results revealed that the nucleotide sequence encoding the 52 N-terminal amino aci

128 ion of Cx43, which resides upstream from the nucleotide sequence encoding the carboxyl terminus (nucl

129 We determined the nucleotide sequences encoding 2.3 x 10(7)unique HCDR3 am

130 n sequences could be more conserved than the nucleotide sequences encoding them.

131 The nucleotide sequence, excluding the sequence for the chlo

132 tic and experimental studies have identified nucleotide sequence features that may increase expressio

133 echanism of TRM4B by demonstrating that a 50-nucleotide sequence flanking m(5)C C3349 in MAIGO5 mRNA

134 with the read coverage depth and a putative nucleotide sequence for each operationally defined gene

135 ve database that contains publicly available nucleotide sequences for almost 260 000 formally describ

136 ve database that contains publicly available nucleotide sequences for over 280,000 formally described

137 ve database that contains publicly available nucleotide sequences for over 300 000 formally described

138 l RNA-positive controls and primer and probe nucleotide sequences for real-time RT-PCR testing.

139 ets of complete or near-complete protein and nucleotide sequences for the query protein families.

140 "cap-snatching," where IAV snatches a short nucleotide sequence from capped host RNA.

141 known as basecalling, i.e. the inference of nucleotide sequence from raw sequencing data.

142 AluSx3 element and differs in both size and nucleotide sequence from the reference (AAAAG)(11) allel

143 also obtained viral protein (VP) 1/VP2 gene nucleotide sequences from 43 patients.

144 nd a greater evolution of diversity in gp350 nucleotide sequences from AIM to CONV.

145 The majority of ROP16 nucleotide sequences from Colombian patients with ocular

146 gree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal struc

147 scriptome generated >12 million reads (total nucleotides sequenced >1 Gb).

148 Nucleotide sequencing has become increasingly common and

149 The unexpected nucleotide sequence homology between SLE patient-derived

150 Existing motif databases contain extensive nucleotide sequences identified in binding experiments b

151 The average nucleotide sequence identity between two genomes can be

152 one of six PRRSV isolates (sharing 55 to 99% nucleotide sequence identity in ORF5).

153 Their genomes show up to 68% nucleotide sequence identity to Thogoto virus (segment 2

154 y functional despite retaining as low as 30% nucleotide sequence identity with rpoA genes from outgro

155 Protein-coding genes share 93% nucleotide sequence identity, whereas pseudogenes are on

156 d it describes the specific parameters for a nucleotide-sequence-identity-based method of organizing

157 at can make a single base change on specific nucleotide sequence in an RNA transcript.

158 mutagenesis analyses revealed a conserved 40-nucleotide sequence in the hpdH promoter, which plays a

159 ur experiments revealed that a cis-acting 12-nucleotide sequence in the proximal 3' UTR of MTCH2 is t

160 both NS1 nicking and binding sites, to a 46-nucleotide sequence in the right-end hairpin.

161 ngly labeled substrates as a function of the nucleotide sequence in the vicinity of the fluorophore a

162 I footprint analysis identified the specific nucleotide sequence in these promoters that VtlR binds t

163 The nucleotide sequence in this region has been determined f

164 PCR identified B. enterica nucleotide sequences in biopsy specimens from all three

165 he other Cas9 orthologs, CjCas9 contacts the nucleotide sequences in both the target and non-target D

166 MyDGR accepts query nucleotide sequences in FASTA format, and outputs all th

167 it can theoretically generate 10(26) unique nucleotide sequences in its target gene, legionella dete

168 Argonautes use the nucleotide sequences in miRNAs as guides for identifying

169 nd AAP were co-evolved from random or native nucleotide sequences in silico.

170 at 11.7 % of BESs are still unmatched to any nucleotide sequences in the current public databases des

171 and cytosine-adenine (CA) repeats in IFNG by nucleotide sequencing in 647 patients with CL caused by

172 Despite the tremendous drop in the cost of nucleotide sequencing in recent years, many research pro

173 ure that the MinION/OsBp platform senses a 2-nucleotide sequence, in contrast to the reported 5-nucle

174 ly model is extended to incorporate explicit nucleotide sequence information as well as simple aspect

175 of Illumina Body Atlas expression profiles, nucleotide sequence information, a BLAST search tool and

176 ng and providing comprehensive public-domain nucleotide sequence information.

177 chive (ENA) is Europe's primary resource for nucleotide sequence information.

178 Using each property, we convert the nucleotide sequence into a new sequence consisting of on

179 F protein cleavage and an insertion of a 198-nucleotide sequence into the HN-L intergenic region, res

180 Converting nucleotide sequences into short overlapping fragments of

181 odecahedral viral capsid, a computer-derived nucleotide sequence is evolved de novo that is optimal f

182 Its highly conserved nucleotide sequence is suggestive of its robustness unde

183 cess of translating raw electrical signal to nucleotide sequence, is of critical importance to the se

184 using molecular modeling, by means of a six-nucleotide sequence joining 3' and 5' ends of each stran

185 The nucleotide sequence, length, and dimerization properties

186 utic miRNAs could be identified based on the nucleotide sequence matching of miRNAs to targeted mRNA

187 ugh post-transcriptional regulation based on nucleotide sequence matching.

188 ution, as identification of conserved target nucleotide sequences may confer activity across marburgv

189 Comprised of small nucleotide sequences, microRNAs have demonstrated critic

190 hosphorylation ribozymes, we identified a 17-nucleotide sequence motif embedded in a 44-nucleotide ps

191 nments, evolutionary analysis, and signature nucleotide sequence motifs of the hemotropic Mycoplasma

192 n synonymously eliminate RM targets from the nucleotide sequence of a genetic tool in silico, synthes

193 This is the first report of the complete nucleotide sequence of a Plasmodium apicoplast DNA.

194 The nucleotide sequence of an ORF1a fragment (940 nucleotide

195 Furthermore, the nucleotide sequence of chimeric structures was obtained,

196 indicate an intricate interplay between the nucleotide sequence of DNA and its dynamic packaging int

197 overlapping open reading frame 2/3 (ORF2/3) nucleotide sequence of HEV.

198 The nucleotide sequence of intron I of the hAGT gene contain

199 The nucleotide sequence of mclS is highly conserved among M.

200 The nucleotide sequence of MsrA2, optimized for expression i

201 iant Multipass calculates the likelihood and nucleotide sequence of several most likely sequences giv

202 viral RNA transcripts that do not change the nucleotide sequence of that RNA, is poised for a major e

203 eveloping area of biotechnology in which the nucleotide sequence of the genome of living cells is pre

204 ng is the process of precisely modifying the nucleotide sequence of the genome.

205 of model outcome, in addition to the actual nucleotide sequence of the guide DNA strand.

206 strains and this could be predicted from the nucleotide sequence of the promoter region.

207 Here, we present the first high-quality nucleotide sequence of the repeat-rich (80.9%), 3.02-Gb

208 An incomplete match to the nucleotide sequence of the RNA-dependent RNA polymerase

209 endent on both the presence of a PTC and the nucleotide sequence of the transgene mRNA, which is homo

210 elated organisms from an analysis of the raw nucleotide sequence of their genes.

211 Phylogenetic analysis of the nucleotide sequence of two 16S rRNA regions showed that

212 We obtained the nucleotide sequences of 65 individual DI-RNAs, identifie

213 However, by comparing the nucleotide sequences of all established Mga binding site

214 t information extracted from the surrounding nucleotide sequences of candidate poly(A) motifs can dif

215 Our analysis was based on the nucleotide sequences of COI and COII mitochondrial genes

216 We retrieved 687, 667, 101 and 248 nucleotide sequences of HCV NS3 genotypes 1a, 1b, 2b, an

217 enetic distances were estimated from aligned nucleotide sequences of HIV-1C env gp120.

218 Nucleotide sequences of influenza A virus isolates colle

219 We analyzed 651 attachment (G) glycoprotein nucleotide sequences of RSV B collected over 11 epidemic

220 The nucleotide sequences of the aap gene A-domain region and

221 We determined the nucleotide sequences of the Prss31 gene in different mou

222 often unappreciated problem by modifying the nucleotide sequences of the target mRNA to make them non

223 Comparing the nucleotide sequences of the three genomic RNAs of the mo

224 uence, which could be generated by canonical nucleotide sequences of TRGV5 or TRGV6 and TRDV4 However

225 Functional non-coding (fnc)RNAs are nucleotide sequences of varied lengths, structures, and

226 Nucleotide sequencing of 18 mutants enabled assignment o

227 Nucleotide sequencing of the inserted DNA confirmed it w

228 Nucleotide sequencing of the reaper insert in virus popu

229 ute flaccid paralysis (AFP) were compared by nucleotide sequencing of the VP1 capsid region (906 nucl

230 modification of phage DNA, no differences in nucleotide sequence or DNA modifications were detected,

231 The package takes either nucleotide sequence or genomic coordinates as input and

232 ns that were more correlated with either the nucleotide sequence or the DNA shape of their preferred

233 The ability to translate three nucleotide sequences, or codons, into amino acids to for

234 DNNs trained on nucleotide sequences outperform (R(2) = 0.43-0.70) previ

235 A completely randomized 10-nucleotide sequence preceding an upstream open reading f

236 e HIV Rev protein forms a complex with a 351 nucleotide sequence present in unspliced and incompletel

237 and Candida lusitaniae Targeting rDNA region nucleotide sequences, primers specific for C. auris only

238 y tools have been developed to create random nucleotide sequences, protein coding sequences are subje

239 for calculating DNA structural features from nucleotide sequences provided by motif databases.

240 The nucleotide sequence provides vital molecular information

241 is and mutagenesis studies have elucidated a nucleotide sequence region (V1) that allows differential

242 y to the sshRNAs and nowhere else in the 500-nucleotide sequenced region, while the viruses from the

243 urther, we determined that minimizing direct nucleotide sequence repeats within the TALE moiety permi

244 of infected hosts for enriching metadata in nucleotide sequences repositories like National Center o

245 the ENA represents a globally comprehensive nucleotide sequence resource.

246 , i.e., NCBI BLAST, or they can only support nucleotide sequence search, e.g., MegaBLAST.

247 ers are restricted to encoding amino acid or nucleotide sequences separately, limiting their potentia

248 at protein PCR product was sequenced and the nucleotide sequence showed identity to PRSV YK strains i

249 CHN-49/2002, and demonstrated 52.5% to 54.2% nucleotide sequence similarity to the corresponding gene

250 n between ohr and ohrR that shares extensive nucleotide sequence similarity with so-called "OhrR boxe

251 g word and sentence embedding approaches for nucleotide sequences since they may be a suitable numeri

252 machinery to their nucleic acid targets in a nucleotide sequence-specific manner.

253 s has vastly expanded through advancement in nucleotide sequencing technologies and an increasing foc

254 Next-generation nucleotide-sequencing technology has made it feasible to

255 previously reported that the removal of a 20-nucleotide sequence, termed the D sequence, from both en

256 We truncated the 5' leader to a 300-nucleotide sequence that drives cap-independent translat

257 systems, scoutRNA includes a conserved five-nucleotide sequence that is essential for activity.

258 res the number of kinetic traps available to nucleotide sequences that are paired in the native struc

259 and 23S rRNAs of Escherichia coli K12; that nucleotide sequences that could encode key fragments of

260 n factors (TFs) are commonly described using nucleotide sequences, the 3D DNA structure is recognized

261 re constructed for each viral gene using the nucleotide sequences, thereby defining novel allele leve

262 abases have served as vital repositories for nucleotide sequences, they do not accession all the meta

263 re, 2D molecular contacts and 1D protein and nucleotide sequences through an integrated sequence/anno

264 is a cellular process that precisely alters nucleotide sequences, thus regulating gene expression an

265 ations heavily utilize the alignment of long nucleotide sequences to assembly graphs, first general-p

266 atform targeting ribosomal DNA (rDNA) region nucleotide sequences to quickly and accurately test for

267 first-order Markov model for the background nucleotide sequences to test the significance of affinit

268 ing random yet complementary double-stranded nucleotide sequences to the sample DNA of interest.

269 Samples positive for HCoV were submitted for nucleotide sequencing to determine the species.

270 eres are protein-bound regions of repetitive nucleotide sequences (TTAGGG) at the end of human chromo

271 Shared hemoplasma nucleotide sequence types between guigna and domestic ca

272 d, representing clonal expansions (identical nucleotide sequence; "ultraprivate").

273 manner that can depend on the endogenous L1 nucleotide sequence, underscoring the complexity of L1 r

274 ds, which we refer to collectively as unique nucleotide sequence (UNS)-guided assembly, in which indi

275 sign synthetic, biologically inactive unique nucleotide sequences (UNSes) that facilitate accurate or

276 l elements (EVEs) genetically preserve viral nucleotide sequences useful to the study of viral evolut

277 system is based on the analysis of the input nucleotide sequence using models built from curated RefS

278 eported QSOX1 cDNA, and confirmed its 3' end nucleotide sequence using RACE-PCR.

279 Analysis of nucleotide sequence variability for these in conjunction

280 MG192 nucleotide sequence variation correlated with estimated

281 protein sequence and phenotype although the nucleotide sequence was different.

282 The L. purpureus arcelin nucleotide sequence was homologous to Arl-3 and Arl-4 al

283 The complete nucleotide sequence was obtained and a phylogenetic stud

284 d that a subset of nucleosomes positioned by nucleotide sequence was sensitive to methylation where t

285 The assembled nucleotide sequence was up to 92% identical to two recen

286 The frequency of TCRbeta nucleotide sequences was significantly higher in PSC sam

287 g a DNA walk as a form of 2D analysis of the nucleotide sequence, we demonstrate that chaotic behavio

288 ng segments whose CG content mimicked random nucleotide sequence were defective in unmanipulated cell

289 Thousands of screened 200-nucleotide sequences were analyzed to compare the divers

290 Nucleotide sequences were assembled using BioEdit and tr

291 ved that T cells with identical TCRbeta CDR3 nucleotide sequences were capable of recognizing donor a

292 Male-specific short nucleotide sequences were used to define a male-determin

293 for longer DNA fragments, regardless of the nucleotide sequence, which are in agreement with experim

294 tore information at scales beyond the linear nucleotide sequence, which impacts genome function at th

295 vances in molecular biology, microscopy, and nucleotide sequencing will provide the tools to test the

296 Transfer RNA (tRNA) links messenger RNA nucleotide sequence with amino acid sequence during prot

297 tide sequence, in contrast to the reported 5-nucleotide sequence with native nucleic acids.

298 used for analysis of homologous protein and nucleotide sequences with high sensitivity.

299 However, brute-force summation over all the nucleotide sequences with the correct amino acid transla

300 CPV variants are more than ~99% identical in nucleotide sequence, with only a limited number (<40) of