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1 ground truth, computational cost of calling orthologs).
2 ut little is known about the role of its NTS ortholog.
3 odent TRPA1 without affecting the Drosophila ortholog.
4 irst sequenced bacterium with a recognizable ortholog.
5 nscription factor gene with the myxoma virus ortholog.
6 o IL-23R is different from that in the human ortholog.
7 f protein-coding zebrafish ISGs had no human ortholog.
8 active in yeast even if it does not have an ortholog.
9 n endogenous arsRBC operon but lacks an arsH ortholog.
10 issues more often replace their single yeast ortholog.
11 these activities vary among different Cas12a orthologs.
12 on allowed for functional analyses of lethal orthologs.
13 ith the pharyngeal arch expression of Pou3f3 orthologs.
14 ve lignan- and aromatic terpenoid-forming DP orthologs.
15 ing functional observations in multiple MscL orthologs.
16 volutionary rate of functional changes among orthologs.
17 s, we predicted the structures of several gK orthologs.
18 ons and dinucleotide percentages to identify orthologs.
19 mer's disease risk genes lack adequate mouse orthologs.
20 nce of antigen-specific T cells against both orthologs.
21 uitment capacities of human MIF by its plant orthologs.
22 n Domains (RDs), which are unique to Pumilio orthologs.
25 e compare recombinant human and baboon APOL1 orthologs, along with interspecies chimeras and individu
27 is transcriptional regulation: a barley PHR1 ortholog and a TF containing an uncharacterized MYB doma
29 n for dnd revealed that tdnd encodes the dnd ortholog and its transcript is detectable only in the te
30 unctional relationship among eukaryotic FAAH orthologs and features that contribute to versatility an
31 We examined the receptor activity of 14 ACE2 orthologs and found that wild-type and mutant SARS-CoV-2
32 ated into crop species using endogenous PBS1 orthologs and holds strong potential for GMO-free develo
33 expression of two adjacent genes, pb (a Hox2 ortholog) and zen2 (a divergent Hox3 paralog), with disp
34 e arms, contains 95% of expected single copy orthologs, and a nearly complete assembly of this indivi
35 tic diversity of the PAM recognition by Cas9 orthologs, and provide a basis for the further engineeri
36 diverged dispensability at 12% of conserved orthologs, and validation experiments confirmed 22 diffe
37 (TFL1) and FLOWERING LOCUS T (FT) and their orthologs antagonistically regulate these life history t
39 for cancer and AIDS treatment, DDX3X and its orthologs are extensively studied, yielding a wealth of
43 motifs, highly conserved between the studied orthologs, are critical for TTC29 axonemal localization
44 model of SOD1-linked ALS identified the USP7 ortholog as a suppressor of proteotoxicity in the nervou
45 osophila tau (dTau) is a true vertebrate tau ortholog as it interacts with the neuronal microtubule a
47 tations and establish a role for the SMARCD1 ortholog Bap60 in the regulation of neurodevelopmental g
48 iotic resistance (VAMPr), to (1) derive gene ortholog-based sequence features for protein variants; (
49 we dissected the function of Brachypodium FT orthologs BdFTL1 and BdFTL2 using overexpression and gen
52 EME1 and GEN1, as well as by the human RecQ orthologs BLM and RECQL4-surprising potential procancer
54 can be chosen to not only assemble presumed orthologs but also paralogous gene loci in distinct cont
57 simulations demonstrating that when only one ortholog can replace its corresponding yeast equivalent,
59 itis elegans strain deficient in the ATP13A2 ortholog catp-6 These animals exhibited a basal elevated
63 ncBAF complex members, including the BRD9/7 ortholog, CG7154, and is the defining member of the ncBA
64 e pattern of replaceability across different ortholog classes, with an obvious trend toward different
66 unction, we find strong evidence against the ortholog conjecture in the context of function predictio
67 rom over 80 000 publications, to revisit the ortholog conjecture in two pairs of species: (i) Homo sa
69 research has provided little support for the ortholog conjecture, though the incomplete nature of the
72 ter oilseed rape, expression of multiple FLC orthologs declines not during winter but predominantly d
73 ated depletion, we report here that the ELYS ortholog (dElys) plays critical roles during Drosophila
75 Interestingly, human hepsin and prostasin orthologs did not activate H3, but they did activate IBV
76 ful biocatalysts, generating comparably rich ortholog diversity is difficult, as it is the product of
77 eceptor (H(3)R) and especially for the H(4)R orthologs [e.g., human (h) and mouse (m)] are highly nee
79 deletion of the AMP-activated protein kinase ortholog-encoding gene SNF1 can restore the oxygen consu
82 CRISPR/Cas9 methodologies to identify a CPR5 ortholog essential for proper trichome growth in soybean
84 restriction, and that diverse mammalian RTP4 orthologs exhibit striking patterns of specificity again
87 l receptor for JUNV, while hamster and mouse orthologs fail to support viral entry/infection of pseud
88 es fibroblast growth factor 15 (FGF15; human ortholog FGF19) in the gut to potently inhibit bile acid
92 GTP binding protein C homolog 1 RAGC-1, the ortholog for mammalian RagC/D GTPases, conferred starvat
93 ilize human ACE2 and a number of animal-ACE2 orthologs for cell entry, indicating risks of spillover
94 ous insects are 'Drosophila-like', using PRG orthologs for PR patterning, most Of-PRGs are expressed
95 kilobase indels containing entire genes, and orthologs for which most amino acid residues are polymor
97 cobacterium kansasii is 86% identical to the ortholog from M. tuberculosis and catalytically active.
99 f Cas9 nucleases and identified a small Cas9 ortholog from Staphylococcus auricularis (SauriCas9), wh
100 g domain of SmacCas9 to its well-established ortholog from Streptococcus pyogenes (SpyCas9), and furt
102 ative structure/functional analysis of CYP51 orthologs from different biological kingdoms and employe
103 ds of essential yeast genes with their human orthologs from gene families that have undergone lineage
104 ted gene projections from our 'Tool to infer Orthologs from Genome Alignments' (TOGA) software with d
106 rom Ochromonas spp. (OcP1) together with its orthologs from other species, leading us to propose the
109 ectopic expression of human ACE2 or of ACE2 orthologs from various mammals, including Chinese rufous
110 In this study, we analyzed TolC and its two orthologs, FtlC and SilC, present in the fully virulent
112 11 571 RBPs with RBDs (corresponding to 6368 ortholog groups) and 3,651 non-canonical RBPs without kn
113 plex, and deficiency of its highly conserved orthologs has been consistently shown to cause defective
115 in patients with rheumatic disease, and Ro60 orthologs have been identified in 3% to 5% of bacterial
116 ated with the down-regulation of genes whose orthologs have been implicated in programmed cell death
117 uman cell culture, deletion of the human HIP orthologs HIP1 and HIP1R led to decreased infection by C
118 ysis of Drosophila Labial and its mouse HOX1 orthologs (HOXA1, HOXB1, and HOXD1) as a paradigm to add
119 d tissue-specific expression of the human co-orthologs, i.e., the human proteins that are less diverg
120 OMA and OrthoFinder, JustOrthologs decreases ortholog identification runtime by more than 96% and ach
122 A. officinalis, AoCYP94B1, and its putative ortholog in Arabidopsis (Arabidopsis thaliana), AtCYP94B
123 Mammalian TFEB and TFE3, as well as their ortholog in Caenorhabditis elegans HLH-30, play an impor
124 ed the vital roles of pezo-1, the sole PIEZO ortholog in Caenorhabditiselegans, in regulating reprodu
128 etion and two frameshift mutants of the ANT1 ortholog in the C4 millet Setaria viridis by the CRISPR/
129 evious studies have revealed a single Arl13b ortholog in the evolutionarily divergent Trypanosoma bru
134 atterns of synteny between the Hox2 and Hox3 orthologs in Arthropods are consistent with a shared reg
140 ovide evidence for the function of CYCLIN C1 orthologs in the promotion of flowering and the maintena
142 and human genes possess clearly identifiable orthologs in yeast, and many have undergone lineage-spec
143 oforms during neocortical neurogenesis whose orthologs include risk genes for neurodevelopmental diso
145 knockdown and knockout of the unique TBC1D8B ortholog-induced proteinuria and that this phenotype was
146 interactions, whether through literature or ortholog interaction data, through multiple unique inter
147 itation data demonstrate that the maize CFM1 ortholog is bound to introns whose splicing is disrupted
148 s of Poltheta in different genomic loci; one ortholog is homologous to the Poltheta C-terminal polyme
149 e members FBP9 and FBP23, for which no clear ortholog is present in Arabidopsis, play a major role in
156 se "crispant" zebrafish larvae of the Draper ortholog (MEGF10) or the Pez ortholog (PTPN21) exhibit a
159 They further show that hepsin and prostasin orthologs might contribute to the differences observed i
162 known as Mas-related GPCR-X2 (MRGPRX2, mouse ortholog, MrgprB2), has recently been identified, which
163 We establish that the Collagen XV/XVIII ortholog Multiplexin in the tissue-basement membranes an
165 PR-mediated homozygous deletion of the mouse ortholog of a noncoding region with candidate pacemaker-
167 the phenotype revealed that PPAT, the human ortholog of ADE4, showed only partial function whereas a
168 rongly associated with truncation of Ma1, an ortholog of ALUMINUM-ACTIVATED MALATE TRANSPORTER9 (ALMT
170 response regulated by atfs-1, the C. elegans ortholog of ATF4, causing hypersensitivity to rotenone,
173 Type II M.HinfI DNA methyltransferase and an ortholog of CcrM, BabI, but not with DNA methyltransfera
174 ed polymerase II (Pol II) and Rad26, a yeast ortholog of CSB, to study the role of CSB in transcripti
177 Here, we show that Mph1, the budding yeast ortholog of Fanconi anemia helicase FANCM, prevents prec
178 he DOM-B complex incorporates H2A.V (the fly ortholog of H2A.Z) genome-wide in an ATP-dependent manne
180 re we explored the role of murine Fpr2/3, an ortholog of human FPR2/receptor for lipoxin A4 (ALX), in
181 ow that downregulation of galcb, a zebrafish ortholog of human GALC, affects melanoblast and melanocy
182 terized SMALL ORGAN4 (SMO4), the most likely ortholog of human GLTSCR2 and yeast Nop53 in Arabidopsis
183 tein kinase-encoding genes yielded gsk-3 (an ortholog of human GSK3B) and cdk-2 (a CDK2-related kinas
186 h model we investigated the role of prokr1b (ortholog of human PROKR2) during early stages of GnRH ne
187 CRISPR/Cas9-mediated ablation of ptprja (the ortholog of human PTPRJ) in zebrafish, which induced a s
188 titution mutation at this locus in the human ortholog of KCC2, found previously in patients with febr
189 eported that the Drosophila Fit1 protein (an ortholog of kindlin-2) prevents abnormal spindle assembl
192 he activity of UBE2N is restored by MvcA, an ortholog of MavC (50% identity) with ubiquitin deamidase
195 We further show that INSM1, the mammalian ortholog of Nerfin-1, plays a conserved role in repressi
197 Drak phosphorylated Sqh, the Drosophila ortholog of nonmuscle myosin regulatory light chain (MRL
198 by sequencing revealed that EDS4 encodes the ortholog of NUCLEOPORIN 205, a core component of the inn
199 e precursor cells is regulated by CMT-1, the ortholog of p31(comet), which is required for both PCH-2
200 Knockout experiments showed that TgSPY, an ortholog of plant SPINDLY and paralog of host OGT, is re
201 late and activate DinB/pol IV, the bacterial ortholog of Polkappa, to induce mutagenesis that enables
203 f the nuclear lamina; mutations in the human ortholog of Ste24 diminish its activity, giving rise to
204 ously established that yeast ENV7 encodes an ortholog of STK16-related kinases that localizes to the
205 We identified Drosophila Tao kinase, the ortholog of the ASD risk gene Taok2, as a regulator of d
206 Here we show that Chlamydomonas VIG1, an ortholog of the Drosophila melanogaster Vasa intronic ge
207 ioral evidence showing that in C. elegans an ortholog of the human LAT1 transporter, AAT-1, imports K
208 in fatty acid beta-oxidation) and tub-1 (an ortholog of the human TUBBY involved in the neurological
210 nicity, MDV-miR-M4, a highly expressed viral ortholog of the oncogenic miR-155, has received extensiv
211 revealed that Arabidopsis MYB99, a putative ortholog of the petunia (Petunia hybrida) floral scent r
214 e plant symbiont Sinorhizobium meliloti, the ortholog of VtlR, named LsrB, is involved in the symbios
216 also report that the Caenorhabditis elegans orthologs of 14-3-3zeta and MSec regulate the size and a
219 hree related coronaviruses to utilize animal orthologs of angiotensin-converting enzyme 2 (ACE2) for
220 nts are present in T. sinense, which has two orthologs of AtVND7, the master regulator of vessel form
223 hat the substrate specificities of the human orthologs of caspase-11, i.e. caspase-4 and caspase-5, a
224 oci, revealing that that LATE3 and LATE4 are orthologs of CYCLIN DEPENDENT KINASE8 (CDK8) and CYCLIN
230 d with the precipitation gradient, including orthologs of genes that regulate seed size in other cere
231 lines trapped diverse proteins, including 64 orthologs of human disease-associated genes with 40 as p
232 on is inconsistent across different systems; orthologs of LSD1 have been shown to either promote or a
234 mplifies genetic regions of interest such as orthologs of P. falciparum drug resistance-associated lo
235 osoma cruzi exhibits two individual putative orthologs of Poltheta in different genomic loci; one ort
236 evealed loss of NPY/NPF-type signalling, but orthologs of PrRP-type neuropeptides and sNPF/PrRP-type
237 ol will enable users to efficiently identify orthologs of regulatory elements across hundreds of spec
239 ricted CD8(+) T cells recognizing the murine orthologs of SCG5, urocortin-3, and proconvertase-2 infi
241 ted by mutually antagonistic action of aspen orthologs of the flowering regulators TERMINAL FLOWER 1
242 s one of the two hitherto unknown C. elegans orthologs of the human AF4/FMR2 family proteins, which a
243 AR RNA POLYMERASE D1a (OsNRPD1a), one of two orthologs of the largest subunit of plant-specific RNA p
244 oV-2 and SARS-like viruses to utilize animal orthologs of the SARS-CoV-2 receptor ACE2 might provide
245 ndle (asp) and WD repeat domain 62 (W dr62), orthologs of the two most commonly mutated genes in huma
247 tial analysis also revealed an enrichment in orthologs of urease, which has been linked to dysbiosis
254 is task, regardless of whether it comes from orthologs or paralogs, is most likely to lead to higher
261 e of the Draper ortholog (MEGF10) or the Pez ortholog (PTPN21) exhibit a failure in leukocyte recruit
263 estine, genetic deletion of either mammalian ortholog, Rala or Ralb, reduced ISC function and Lgr5 po
264 laceability, showing that in the case of 1:2 orthologs, replaceability is predicted largely by the di
266 derstanding of the dysfunction of human pump orthologs responsible for some newly discovered neurolog
272 n conjunction with a comprehensive tRNA gene ortholog set spanning 29 placental mammals to estimate t
274 a) DvSSJ1 mRNA, a Drosophila snakeskin (ssk) ortholog, show insecticidal activity and significant pla
276 varying properties between otherwise related orthologs, suggesting selective pressure to diversify PA
277 ao kinase, showing that its ASD-linked human ortholog, Tao kinase 2 (Taok2), could replace Drosophila
279 trophenol-beta-D-glucuronide (pNPG), the GUS orthologs that are most efficient at processing drug-glu
280 quence analysis identified 33 putative wheat orthologs that have high identity with rice genes in QTL
281 ne and human IL-23p19 (Trp(156) in the human ortholog), the site 3 W156A substitution in hIL-23p19 di
282 minal RDs are conserved in mammalian Pumilio orthologs, the results of this work broadly enhance our
285 been shown that the conserved role of poplar orthologs to Arabidopsis CONSTANS (CO) directly activate
287 tudy, we combine protein motifs from several orthologs to engineer two variants of Streptococcus cani
288 ify the ability of various properties of the orthologs to predict replaceability, showing that in the
289 c footprinting pipeline based on precomputed orthologs to predict the direct targets of ~67% of ECF s
290 (hlh-30), the Caenorhabditis elegans MiT/TFE ortholog, to starvation followed by refeeding to underst
291 E2 and E3 enzyme activities, including Cdc34 orthologs UBE2R1 and UBE2R2, appear to mediate SCF-catal
293 y of yeast genes having more than 2 human co-orthologs was marked by retention of orthologous interac
294 mammalian Hig1 proteins and Cox3/Cox12/Cox13 orthologs, we propose that Hig1 type 2 proteins are stoi
295 to identify glycosylation substrates of NleB orthologs, we unexpectedly observed that the bacterial g
298 rall, (Ss)RidA-1 is similar to the mammalian orthologs whereas (Ss)RidA-2 displays unique properties
299 e regulator Stu2 (budding yeast Dis1/XMAP215 ortholog), which we demonstrate here is likely a conserv
300 r, we identified a small set of seed-related orthologs with expression specific to desiccation-tolera