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1 genes underlying these changes are often not orthologous.
3 e investigated the effects of homologous and orthologous active-site mutations on both stability and
7 RP-type and sNPF-type signalling systems are orthologous and originated as a paralog of NPY/NPF-type
8 ncing diverse genomes allowed the tracing of orthologous and paralogous genes to understand the co-ev
9 et of gene families to allow traversal among orthologous and paralogous sequences across the legumes.
10 eoxy-d-glucose (2DG) on ADPKD progression in orthologous and slowly progressive murine models created
11 In addition to allelic variation, abundant orthologous and species-specific KIR genes were identifi
12 RH-type and the protostomian AKH systems are orthologous and the origin of a paralogous CRZ-type sign
13 henotype that is rescued by expression of an orthologous antitoxin, DarG(Taq) , from Thermus aquaticu
15 structure of the equivalent region from the orthologous barley powdery mildew resistance protein, ML
16 Human and mouse genomes contain pairs of orthologous bitter receptor genes that have been conserv
18 Moreover, we have demonstrated that sequence-orthologous bitter taste receptors have distinct agonist
19 uncating variants in transiently transfected orthologous cells and cultured hippocampal rat neurons r
22 large interspersed duplication blocks at non-orthologous chromosomal locations in each primate lineag
26 Together, these data support a role for non-orthologous commensal-host cross-reactivity in the devel
28 nerability in Ewing sarcoma cells, providing orthologous confirmation of the chemical screen findings
29 Macaca mulatta (macaque), as well as perform orthologous conversions among the supported species.
30 se morpholino oligonucleotides to target the orthologous Danio rerio gene, dlx4b, and found reduced c
31 of conditionally degradable or stabilisable orthologous dCas9 or Cpf1 effector proteins, thus openin
33 ological traits in mice carrying the 16p11.2 orthologous deletion or duplication, as well as Bola2(+/
34 er replacement of the genes pgi or tpiA with orthologous DNA from donor species spanning all domains
36 e and conservation of surface residues among orthologous domains, we mapped the BMP-binding epitope o
38 racterized OCR-4 TRPV subunit as well as the orthologous Drosophila Nan-Iav TRPV channel, and we exam
39 ssays to show that transport activity of the orthologous endosomal NHE Nhx1 is important for multives
43 (2) Enhancer in-vivo activity, revealing orthologous enhancers with conserved activity despite di
44 per neutral site), identifying thousands of orthologous enhancers with conserved or diverged combina
47 tterning with concomitant attenuation of the orthologous expression of tcf3a/b, encoding a binding pa
48 notype in mice that are heterozygous for the orthologous factor, impeding the study of complex phenot
49 ctional annotation of gene models identified orthologous families for the majority ( approximately 73
50 e previously developed a mouse model that is orthologous for a known patient mutation in Asah1 that r
52 ional changes led to a reduced expression of orthologous functions between the coexisting species.
54 omology-directed recombination to harbor the orthologous Gaa mutation c.1826dupA (p.Y609*), which cau
55 lly, while the mammalian genome contains two orthologous Gcm genes, their function has been demonstra
56 c knockdown or overexpression of each single orthologous gene (Da, Mef2, Ube3a, Zfh1, XNP) and in pai
58 nd produce an advanced pipeline for curating orthologous gene alignments from combined transcriptomic
61 ximum likelihood phylogenetic trees for each orthologous gene and corresponding 16S rRNA reference sp
62 osed a method that explains the evolution of orthologous gene blocks (orthoblocks) as a combination o
66 eterozygous loss-of-function mutation of the orthologous gene exhibit alterations in axonal branching
68 osotalea genomes contained a core set of 103 orthologous gene families absent from all other ammonia-
69 pecies ca. 60 Mya, only 35% of the ancestral orthologous gene families from the cyanobacterial endosy
70 lifestyle led to the simplification of many orthologous gene families involved in the saprophytic tr
71 s database represents a comprehensive set of orthologous gene families shared across multiple complet
75 n this syndrome, knockdowns of the zebrafish orthologous gene resulted in embryos with hydrocephaly a
78 We generated a knockout yeast model for the orthologous gene that showed a defect in respiration and
79 obacterium avium harboring insertions in the orthologous gene whose ability to microaggregate and for
80 e identification of functionally equivalent, orthologous genes (functional orthologs) across genomes
82 MCL method identified 11,362 and 8,174 1:1:1 orthologous genes (one ortholog is represented in each o
83 ed the expression dynamics of the conserved, orthologous genes (orthologs), seeing the degree to whic
84 at the majority of orthologs were positional orthologous genes (POGs) with localization on homologous
85 tructed chimeric mRNAs carrying the 3'UTR of orthologous genes and demonstrated that 3'UTR sequence v
87 Frequently, for one query gene, multiple orthologous genes are predicted in the other genome, and
88 articular, we found a significant overlap of orthologous genes associated with eQTLs in both species.
90 s by preferentially regulating expression of orthologous genes for cutin formation, but not wax biosy
92 patterns across a wide range of tissues with orthologous genes from a pre-Ss4R outgroup unexpectedly
93 lia express a conserved core gene program of orthologous genes from rodents to humans, including liga
94 chmark an empirical collection of 853 1-to-1 orthologous genes from seven yeast species and found wpS
95 s, indicating functional conservation of the orthologous genes in controlling chlorophyll content in
96 While we find that expression profiles of orthologous genes in different species are highly correl
99 ypic consequences of loss of function of the orthologous genes in mice and medaka fish and further ex
102 itis elegans, knockout of uba-5 and of human orthologous genes in the UFM1 cascade alter cholinergic,
103 finding is that the expression of 476 human orthologous genes in this rat BPA signature robustly pre
104 ate the data from the promoters of conserved orthologous genes in three or more species was developed
106 erns observed along differentially expressed orthologous genes of Lepidoptera, we further found that
107 alian immune cells, a subset of which are in orthologous genes of mouse and human, suggests a conserv
108 t classes known in A. thaliana We identified orthologous genes of the relevant A. thaliana genes by s
109 enetic analysis, including identification of orthologous genes or proteins, multiple sequence alignme
110 which different central genes were utilized, orthologous genes played different evolutionary roles, a
111 blished knockouts of the fruit fly and mouse orthologous genes resulted in lethality or severe neurol
112 The 'ortholog conjecture' proposes that orthologous genes should be preferred when making such p
113 (fl/fl) mammary carcinomas and comparison of orthologous genes with a human metaplastic carcinoma sig
115 d data, in particular ATGC-COGs (Clusters of Orthologous Genes), multiple sequence alignments, a set
116 l mouse embryos maintained the expression of orthologous genes, and blastocyst development was establ
117 between the physiological roles of seemingly orthologous genes, as xylem loading depends on SKOR and
118 m a DS mouse model duplicated for some Hsa21-orthologous genes, indicating cross-species conservation
119 m species to construct a phylogeny from 9868 orthologous genes, revealing several geographic clades b
120 ged through differences in the regulation of orthologous genes, the formation of new genes by gene du
125 tating the targeted BAC clones, we generated orthologous genomic sequences surrounding the DEP1 locus
127 e a more scalable procedure for hierarchical orthologous group (HOG) clustering, which are several or
130 c domains of CheA and chemoreceptors from an orthologous group exemplified by the Salmonella McpC pro
132 pVOGs are constructed within the Clusters of Orthologous Groups (COGs) framework that is widely used
134 by several orthology databases, hierarchical orthologous groups (HOGs) are sets of genes that are inf
135 y-based term classification (GO), EuKaryotic Orthologous Groups (KOG) and Kyoto Encyclopedia of Genes
137 eggNOG is a public resource that provides Orthologous Groups (OGs) of proteins at different taxono
141 r structurally from those of mosquitoes, and orthologous groups are nearly impossible to define.
144 titled HogProf, which leverages hierarchical orthologous groups for the construction of large profile
147 in the individual genomes into hierarchical orthologous groups reveals a high-resolution picture of
148 hologs; (v) statically computed hierarchical orthologous groups subsets downloadable in OrthoXML form
150 cording to KOG (The annotation of Eukaryotic Orthologous Groups) and KO (KEGG Orthology) in addition
151 ologous Groups (pVOGs, formerly called Phage Orthologous Groups, POGs) resource has aided in this tas
154 EER-associated genes contained an EER in the orthologous human gene, although nucleotide sequence and
155 enous H19/Igf2 ICR (mIC1) is replaced by the orthologous human ICR (hIC1) sequence, designated H19(hI
156 ed replacement of mouse genomic regions with orthologous human sequences has become increasingly viab
158 selection hypothesis, we find that diverged, orthologous IDRs can mostly recapitulate wild-type funct
159 bilizing selection, the functional output of orthologous IDRs could be maintained, such that diverse
160 ep, modelling the proteins, chemicals, their orthologous in other species and their composition in co
161 st proliferation and PKD progression in four orthologous, including two long-lived, mouse models of A
162 h Yap1, a Yorkie homolog, in human cells, an orthologous interaction was not detected in Drosophila c
163 uman co-orthologs was marked by retention of orthologous interactions in functional or protein networ
164 egree to which these can be accounted for by orthologous (internal) versus species-specific (external
168 t19-8 mutant, which is unable to express the orthologous ligandin AtGSTF12, restored anthocyanin accu
172 espite changes in its gene content, a single orthologous locus (MAT/MTL) has controlled cell type thr
175 (FLC) and PERPETUAL FLOWERING 1 (PEP1), two orthologous MADS-box TFs that repress flowering and conf
179 Microorganisms often encode multiple non-orthologous metabolic modules that catalyze the same rea
180 ormed comparative directed evolution of four orthologous metallo-beta-lactamases toward a new functio
181 a benthamiana further reveal a shared set of orthologous microbe-responsive genes that include member
182 we demonstrate cross-reactivity between non-orthologous mimotopes expressed by a common human gut co
185 omy of all or part of human chromosome 21 or orthologous mouse genomic regions, are providing valuabl
186 and mutation of this conserved motif in the orthologous mouse SRF enhancer revealed decreased SRF ex
189 ology of hyper-IgM syndrome patients with an orthologous mutation, lacked CSR and SHM, and had broad
190 ion through inhibiting histone demethylases, orthologous mutations to those known to cause accumulati
191 icient to distinguish previously unknown and orthologous neuronal subtypes as well as regional identi
193 defective (Pkhd1(del4/del4)) mouse, which is orthologous of CHF, we show that Pkhd1(del4/del4) cholan
194 Mouse stx promotes degradation of Cbx4, an orthologous Pc protein, in vertebrate cells and induces
195 ly, we generalize the notion of a phenolog ('orthologous phenotype') to use functionally similar prot
196 acterization and difficulties in identifying orthologous phenotypes and cell types, which are beginni
197 onditional expression of Myd88(p.L252P) (the orthologous position of the human MYD88(p.L265P) mutatio
198 h for the presence or absence of clusters of orthologous protein domains and constructed a dendrogram
200 ast and metazoans, and a family of conserved orthologous protein O-mannosyltransferases is believed t
203 hylogenetic methods to comprehensive sets of orthologous protein-coding and noncoding regions of the
205 ligonucleotide composition-based analysis of orthologous proteins (n = 791) across three genomes reve
206 s of animal cells, involving the activity of orthologous proteins [10, 11], we anticipate that our re
208 the information of subcellular localization, orthologous proteins and PPI networks, we propose a nove
212 ctions of EspE and EspF are conserved in the orthologous proteins from M. tuberculosis Our findings s
213 -wide comparative analyses of mRNAs encoding orthologous proteins from the genus Staphylococcus and f
214 e estimated scores can be used for detecting orthologous proteins in conserved functional modules thr
215 ere strongly connected through essential and orthologous proteins in their immediate network vicinity
216 vestigations on three Caenorhabditis elegans orthologous proteins involved in this post-translational
217 ding on the cellular and organismal context, orthologous proteins may exert both overlapping and oppo
218 up users' search of detailed information for orthologous proteins related to secretion systems of the
219 we call delta-bitscore (DBS) for identifying orthologous proteins that have diverged at the amino aci
222 cerevisiae) Nucleolar protein53 (Nop53) are orthologous proteins with demonstrated roles as ribosome
223 the information of subcellular localization, orthologous proteins with PPI networks, the accuracy of
224 ng the steady-state network Flow to IDentify orthologous proteins) framework combined with an efficie
225 and apply it to a proof-of-concept study of orthologous proteomes in an investigation of host adapta
227 thesized that the introduction of the murine orthologous Ptpn22(R619W) mutation to the NOD genome wou
228 echanisms by generating a mouse model of the orthologous Q140K Abcg2 variant and find male mice have
229 omoter region of the human SLICK (KCNT2) and orthologous rat Slick (Kcnt2) genes, suggesting that con
237 ence-free whole-genome alignment to identify orthologous regions in greater numbers than has previous
238 ted in Sox2-EGFP(+) cells map to over 48,000 orthologous regions in the human genome that include reg
239 veals that PspA orthologs associate with non-orthologous regulatory and effector proteins retaining f
241 in P. axillaris Furthermore, where putative orthologous relationships of ASATs are predicted between
247 ficiently delete and replace the L2-CRM with orthologous sequences from other divergent fly species.
251 of this phosphorylation mark by mutating the orthologous site of CAP-D3 (CAP-D3(T1403A)) in chicken D
252 ense mutations in BRG1, when placed into the orthologous Sth1 ATPase of the yeast RSC remodeler, sepa
255 uman genome or exhibit no p63 binding in the orthologous syntenic regions, typifying an occupancy los
256 roteobacterium Caulobacter crescentus and an orthologous system from an obligate intracellular (ricke
258 tion of Hordeum vulgare VIVIPAROUS1 (HvVP1), orthologous to ABA-INSENSITIVE3 from Arabidopsis thalian
260 EG1C, which together with DEG1A and DEG1B is orthologous to Arabidopsis (Arabidopsis thaliana) Deg1 i
262 on of their alternate isoforms, Delta113p53 (orthologous to Delta133p53 isoform in human) and mdm2-P2
264 illustrated that most goldfish markers were orthologous to genes in common carp, which had four roun
265 We show that the yeast Rim15-Igo1,2 pathway, orthologous to Gwl-Arpp19/ENSA, is up-regulated in early
267 ccharomyces cerevisiae RecQ helicase Sgs1 is orthologous to human BLM, defects in which cause the can
271 ocus that conditions flower and seed colors, orthologous to Mendel's A gene of garden pea, whose loss
272 esponsible for the diminutive mutant, a gene orthologous to MMS19 with a 36.8 kb deletion co-segregat
273 g that although most algae contain sequences orthologous to plant-like l-Rha biosynthesis machineries
274 ns affected conserved residues, and R291Q is orthologous to R294, which is mutated in the BXH2 IRF8-d
275 and Br140, another bromodomain protein, are orthologous to subunits of a mammalian MOZ/MORF acetyltr
276 tein denoted PPR53 (GRMZM2G438524), which is orthologous to the Arabidopsis protein SOT1 (AT5G46580).
277 Drak), a cytoplasmic serine/threonine kinase orthologous to the human kinase STK17A, as a downstream
281 ied alphaTC1/betaTC6 cis-regulatory elements orthologous to those containing type 2 diabetes (T2D)-as
282 ointed out that DRPs of chlorophytes are not orthologous to those of embryophytes: some of them were
283 SCRM1) in the moss Physcomitrella patens are orthologous to transcriptional regulators of stomatal de
284 illi and cilia and express proteins that are orthologous to transporters in microvillar and ciliary o
285 rpholinos against N-terminal zebrafish Ahi1, orthologous to where human mutations cluster, produced a
287 nerating CRISPR/Cas9 knockout mutants of the orthologous tomato gene resulting in light-green tomato
289 a multi-step splicing process occurs in the orthologous transcript, in which a complex intervening s
291 ence is highly conserved within the mRNAs of orthologous transporters in multiple kinetoplastid speci
292 y pathway through conserved targeting of the orthologous Tre-2/Bub2/CDC16 (TBC) Rab GTPase-activating
293 5'ss and 3'ss sequences from the well-known orthologous U12-type spliceosomal intron database U12DB.
294 ed CRISPR-Cas9 to generate mice encoding the orthologous variants and found that compound heterozygos
295 hole-genome duplications, and the concept of orthologous versus paralogous relationships at different
296 ATP1B4 genes represent a rare instance of orthologous vertebrate gene co-option that radically cha
297 lution of repeats within proteins with their orthologous (vertical) evolution through speciation.
298 The chromosomal regions across the human orthologous were interrogated for putative periodontitis
300 sgenic lines, which were generated using the orthologous ZmSHR1 gene to avoid potential silencing of