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1 ally contain a 3' ssDNA G-rich protrusion (G-overhang).
2 e interaction between POT1 and the telomeric overhang.
3 es of the strand terminating with a 5'-ssDNA overhang.
4 p decreases with increasing length of the 5'-overhang.
5 le to the full stretch of 3' human telomeric overhang.
6 ion of the correct single-stranded telomeric overhang.
7 hange (DeltaR(ct)) is found by extending the overhang.
8 ction of free DNA ends to produce a 3'-ssDNA overhang.
9 nd nasally, frequently with Bruch's membrane overhang.
10 same duplex with a 3'-overhang or without an overhang.
11 meric or heteropolymeric sequences in the 5' overhang.
12 e leader-proximal repeat to the prespacer 3' overhang.
13 3'-overhang while Bax1 interacts with the 5'-overhang.
14 ociation of these proteins from the telomere overhang.
15 res terminate in a single-stranded 3' G-rich overhang.
16 correlating with the accumulation of long G-overhangs.
17 strands must first be resected to reveal 3'-overhangs.
18 -base-pair prespacer bearing 4-nucleotide 3' overhangs.
19 ni, including blunt ends and single-stranded overhangs.
20 RNA duplexes, and for duplexes with short 3' overhangs.
21 ends, including blunt, 5' overhangs, and 3' overhangs.
22 o the target DNAs with different lengths and overhangs.
23 Apollo is required for maintaining telomeric overhangs.
24 a similar substrate containing 5-nucleotide overhangs.
25 ctures compared with linear duplex having 3' overhangs.
26 -POT1 switch on telomeric single-stranded 3' overhangs.
27 ficant unwinding of substrates containing 3' overhangs.
28 3-fold lower compared with duplexes with 5' overhangs.
29 ferentiates pre-miRNA species with different overhangs.
30 similarities to hairpins and fixed 5' and 3' overhangs.
31 roduce double-stranded DNA molecules with 5'-overhangs.
32 ds unexpectedly form long 5' single-stranded overhangs.
33 erved due to transient binding of the sticky overhangs.
34 m all dsDNA ends: 5'-overhangs, blunt, or 3'-overhangs.
35 s (' ') to produce fragments with 2-base, 3'-overhangs.
36 wild-type Metnase effectively cleaves ssDNA overhangs.
37 the accessibility of pol mu to DNA ends with overhangs.
38 oson end binding resembles that of spacer 3'-overhangs.
39 n which DSB ends are converted into 3'-ssDNA overhangs.
40 es in the enzyme that can generate longer 3' overhangs.
41 st G to produce fragments with three-base 5'-overhangs.
42 n of DSBs to generate 3' single-stranded DNA overhangs.
43 and from DNA duplexes with single base pair overhangs.
44 define the steps in the processing of these overhangs.
45 d inhibiting unwinding of substrates with 3'-overhangs.
46 ike IDN2 and SGS3, FDM1 binds dsRNAs with 5' overhangs.
47 spI (C CGG), which produce fragments with 5'-overhangs.
48 first be processed into 3' single-strand DNA overhangs.
49 strands must first be resected to produce 3' overhangs.
50 A ends to expose single-stranded DNA (ssDNA) overhangs.
51 equence 5'-CCTCAGC-3', generating 3-base, 5'-overhangs.
52 rategy among NNS RNA viruses resulting in 3' overhangs.
53 RNA constructs, which retained 5' nucleotide overhangs.
54 mulate Artemis activity at hairpins or at 5' overhangs.
55 es out endonucleolytic cleavage of 5' and 3' overhangs.
56 activity mediated loading of Exo1 onto ssDNA overhangs.
57 han with single- or double-stranded DNA with overhangs.
58 commonly used 19mer with two deoxythymidine overhangs (19merTT) variant performed similarly to canon
59 reaction (PCR) fragment containing a single overhanging 3' A to a plasmid vector containing a 3' T.
62 vitro assays to demonstrate that nucleotide overhangs 5', but not 3', proximal to the sgRNA do in fa
63 In contrast, 3'-overhang/3'-overhang and 5'-overhang/5'-overhang templates were processed by resecti
64 blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly repaired with fi
68 h G1 stringently requiring a 5-nucleotide 3' overhang and G2 being able to insert many forms of presp
69 ing the detailed structure of the telomere G-overhang and its maintenance will contribute greatly to
70 vase that does not require a single-stranded overhang and that ATP hydrolysis is not directly coupled
71 fork substrates with 3' single-stranded DNA overhangs and also disrupts protein-DNA interactions whi
72 dition, purified CST complex binds to 5' DNA overhangs and directly blocks MRE11 degradation in vitro
73 in maintaining newly replicated telomeric 3' overhangs and facilitating the switch from replication p
74 by promoting unwinding of substrates with 5'-overhangs and inhibiting unwinding of substrates with 3'
75 t in stabilizing the hybridized state of the overhangs and magnifying the energy barrier to dissociat
78 including human telomeric GQ (with different overhangs and polarities) and GQ formed by thrombin-bind
80 the telomeric C strand, causing extended 3' overhangs and stochastic telomere truncations that could
83 atible ends with blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly
84 initial single-stranded DNA (ssDNA) at a 3'-overhang, and second in binding to SSB to facilitate ann
85 of varying the length of the single-stranded overhang, and studied A-form DNA-PNA duplexes to provide
87 elicases, JFH-1 NS3 does not require long 3' overhangs, and it unwinds duplexes that are flanked by o
88 e nucleolytic resection of DNA with 5'-ssDNA overhangs, and that RecQ helicase can initiate resection
90 high-resolution insight into the telomeric G-overhang architecture under essentially physiological co
93 the repeat unit and produce a duplex with 5'-overhangs, are extended using a thermostable archaeal DN
94 p formation does not require a single strand overhang, arguing that both terminal strands insert into
95 lity of gene 6 protein to remove 5'-terminal overhangs as well as to remove nucleotides from the 5'-t
96 nucleotides, containing a nontemplated 5'-G overhang, as in the natural genome context, as well as t
97 s with the binding stability of BLM to ssDNA overhang, as modulated by the nucleotide state, ionic co
100 -stranded siRNA with at least a 2-nucleotide overhang at one 3' terminus in a dose-dependent manner,
102 odulation of targeting vectors to provide 3' overhangs at both ends increased the efficiency of homol
105 ned by the generation of 3 single-strand DNA overhangs at the break that are initiated by the action
107 lease activity on single-stranded DNA and 5'-overhangs, because this 5'-exonuclease is not dependent
108 two adjacently positioned pockets: a 2 nt 3'-overhang-binding pocket within the PAZ domain (3' pocket
109 Moreover, non-compatible ends with blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang
111 inds forked dsDNA and DNA duplexes with a 3'-overhang but is inactive on blunt-ended dsDNA and 5'-ove
112 bstrates possessing a 3' single-stranded DNA overhang but not of 5' overhangs or blunt-ended DNA frag
113 and resection required the presence of these overhangs but did not require Metnase's DNA cleavage act
114 haped DNA structures having >/=18-nucleotide overhangs but not to a similar substrate containing 5-nu
119 V alone can stimulate Artemis activity on 3' overhangs, but this DNA-PKcs-independent endonuclease ac
120 res the generation of a 3' single-strand DNA overhang by exonuclease activities in a process called D
123 se of subsurface pressure or via creation of overhangs by sublimation, may be a major mass loss proce
124 core, oscillating between the two equivalent overhanging carbonyl groups, coupled to an intermolecula
125 PbOAc exchanging between the two equivalent overhanging carboxylate groups (N-core(up) left arrow ov
126 tion in a bis-strapped porphyrin ligand with overhanging carboxylate groups has been investigated in
127 A bis-strap porphyrin ligand (1), with an overhanging carboxylic acid group on each side of the ma
130 ter duplexes with a single nucleotide 3'-DNA overhang complementary to the 3' nucleotide of the accep
131 omplex, larger DNA sequence that contains an overhang complementary to the CNA can also be encapsulat
132 Artemis at blunt DNA ends is slower than at overhangs, consistent with a requirement for a slow DNA
135 ALT cells possess excessively long telomeric overhangs derived from telomere elongation processes tha
138 he enhanced Exo1 nuclease activity by longer overhanging DNA is largely eliminated by replication pro
139 ingly, we demonstrate that A3H can deaminate overhanging DNA strands of RNA/DNA heteroduplexes, which
141 und in DNA-damage sites, including 5' and 3' overhang DNAs and gapped DNAs with short single-strand s
142 At native telomeres in dna2 mutants, GT-overhangs do clearly elongate during late S phase but ar
144 rised of a T7 promoter and a single-stranded overhang domain (ss-dsDNA), can unlock dynamic DNA-based
147 DSBs affects NHEJ, we made site-specific 5'-overhanging DSBs (5' DSBs) in yeast using an optimized z
151 say, we found that most T. brucei telomere G-overhangs end in 5' TTAGGG 3', while a small portion of
152 By investigations of longer targets with overhangs exposed to the solution, we can demonstrate ap
153 protection involves the insertion of the 3' overhang facilitated by telomere repeat-binding factor 2
154 espect to stimulating Artemis activity at 3' overhangs, favoring the view that these NHEJ proteins ar
155 kness with this approach arises when melting overhanging features, which have no prior melted materia
159 cleavage sites and each of the six expected overhangs formed at nascent termini adjacent to the clea
160 NA binding region, DrII is able to remove 3' overhangs from RNA molecules closer to duplexes than do
163 d that structural asymmetry (e.g. 5- or 2-nt overhang) has no impact on accumulation, but is a princi
164 d DNA2, which process DNA ends into 3' ssDNA overhangs; helicases such as BLM, which unwind DNA; and
165 ths and types (5' and 3') of single-stranded overhangs, if present, on each DNA fragment with an over
166 ultispecies coprolite assemblage from a rock overhang in a montane river valley in southern New Zeala
170 employs two restriction enzymes to generate overhangs in opposite orientations to which (single-stra
171 le-stranded DNA breaks to form long 3'-ssDNA overhangs in preparation for recombinational repair is c
174 emonstrated that the PCR enzyme fills the 5'-overhangs in the early cycles, and the product is then u
175 significantly affect the 5' TAGGGT 3'-ending overhangs, indicating that telomerase-mediated telomere
180 ivity is most efficient on DNA containing 3' overhangs, is facilitated by an insertion loop and conse
182 her preference for duplex substrates with 5' overhangs, it could also catalyze significant unwinding
186 double strands with different complementary overhang lengths can be studied using the same DNA origa
187 evels exhibit shorter telomeres, increased G overhang levels, and altered levels of non-homologous en
188 st that Drosophila telomeres possess a ssDNA overhang like the other eukaryotes, and that the termini
192 sults suggest that GQ formation of telomeric overhangs may contribute to suppression of DNA damage si
193 urfaces are created by designing an array of overhanging microdisks on a polymer film through two ste
194 f double-stranded (ds) DNA fragments with 3' overhangs mimicking double-strand breaks, and prevents r
197 sed on the premise that 5'-and 3'-nucleotide overhangs negate Cas9/sgRNA catalytic activity in vivo.
198 -3', including a 3' terminal single-stranded overhang of 100-200 nucleotides that can fold into quadr
200 An "invader" strand binds to the "toehold" overhang of a target strand and replaces a target-bound
201 e terminal 5'-triphosphate of RNA and the 3'-overhang of DNA results in a stable complex between p58C
203 rt the prediction that in the full-length 3' overhang of human telomeres, G-quadruplexes with shortes
204 igonucleotide homologous to the 3'-telomeric overhang of telomeres, elicits potent DNA-damage respons
205 tructure derived from the single-stranded 3'-overhang of the telomeric DNA is an attractive strategy
206 ferredoxin-like fold, which recognizes a 3'-overhang of U6 snRNA, and a preceding peptide, which bin
207 tivity at DNA hairpins and at 5'- and 3'-DNA overhangs of duplex DNA, and this endonucleolytic activi
209 3'-PG and 3'-phosphate termini on 1-base 3' overhangs of NCS-C-induced DSBs were readily detected in
210 exonucleases DnaQ and ExoT can trim long 3' overhangs of prespacers and promote integration in the c
211 and NMR spectroscopies, we show here that G-overhangs of S. cerevisiae form distinct Hoogsteen pairi
217 electrode side affected the signal more than overhangs on the solution side due to the greater insula
221 in heterodimer, TauF4 is characterized by an overhanging peptide corresponding to the first of the fo
224 sults suggest distinct DSB handling based on overhang polarity that impacts NHEJ kinetics and fidelit
230 d terminate in a single-stranded DNA (ssDNA) overhang recognized by POT1-TPP1 heterodimers to help re
232 randed DNA and linear duplexes containing 5' overhangs relative to the 3' overhangs but not to blunt-
233 shelterin subunit TRF2 reduced telomeric 3'-overhang removal in time-course experiments, as well as
234 telomere damage signalling, nor in telomere overhang removal, which are critical for telomere fusion
235 break ends generates 3' single-stranded DNA overhangs required for homology-based DNA repair and act
237 detachments and those with large, centrally overhanging schisis cavities were excluded from the anal
238 whereas 1.8% demonstrated a large, centrally overhanging schisis cavity requiring surgery (n = 1).
239 er specific to DNA polymerase containing the overhang sequence and the complementary blocker DNA, whi
240 ent target enzymes by simply redesigning the overhang sequence of detection probe, while keeping TaqM
241 can be estimated by the calculator from the overhang sequences or provided by the user from direct e
242 orked DNA, and the terminal 3'-OH of each 3' overhang serves as an attacking nucleophile during integ
244 of DNA constructs with or without GQ in the overhang shows that GQ unfolding is achieved in 50-70% o
247 strate that the presence and polarity of the overhang structure is a critical determinant of double-s
249 ntially binds synthetic forked DNA or 3'-DNA overhang substrates resembling structures used during HR
251 lly, dephosphorylation of the 5'-overhang/3'-overhang template reduced the efficiency of DNA repair w
252 , 3'-overhang/3'-overhang and 5'-overhang/5'-overhang templates were processed by resection of 3-5 ba
255 end in a short, single-stranded DNA (ssDNA) overhang that is recognized and bound by two telomere pr
256 uently resected to form long single-stranded overhangs that can be repaired by mutagenic pathways.
257 d TbTR) and TbKu are required for telomere G-overhangs that end in 5' TTAGGG 3' but do not significan
258 by telomerase and resection to produce 3'-GT-overhangs that extend beyond the complementary 5'-CA-ric
261 Ray Exposure ages demonstrate that the cliff overhanging the Chauvet cave has collapsed several times
262 ch to the full length of the human telomeric overhang, the presence of higher-order quadruplex-quadru
263 Although FDM1 and IDN2 bind RNAs with 5' overhangs, their functions in the RdDM pathway remain to
265 estores the canonical end structure (2-nt 3' overhang) through mono-uridylation, thereby promoting mi
266 use cells by evaluating changes in telomeric overhangs throughout the cell cycle and at leading- and
267 amer and thereby bring the end of the G-rich overhang to close proximity to Ag NCs, resulting in a si
268 inding to SSB to facilitate annealing of the overhang to SSB-coated ssDNA at the replication fork.
269 multiple, short pairs of single-stranded DNA overhangs to components of the structure and triggering
272 or group II pre-miRNAs, which have a 1-nt 3' overhang, TUT7 restores the canonical end structure (2-n
273 f the nucleotide analogues into a DNA duplex overhang using recently evolved XNA polymerases is compa
274 these modified nucleotides into a DNA duplex overhang using the HNA polymerase T6G12_I521L are determ
275 ding an RNA duplex with a single-stranded 5'-overhang versus the same duplex with a 3'-overhang or wi
276 ggering hybridization or dissociation of the overhangs via changes in solution ionic conditions to dr
277 s2 preferentially selects prespacers with 3' overhangs via specific recognition of a PAM, but how the
280 signal enhancement was greater than when the overhang was on the solution side due to the increased t
282 vidual duplex DNA molecules with symmetrical overhangs was carried out by pulling one strand of the d
283 A (pdDNA) constructs with different 5' ssDNA overhangs, we show that BLM localizes in the vicinity of
284 rhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly repaired with fill-in and li
286 ays only edited DNA when 5' sgRNA nucleotide overhangs were removed, suggesting a novel processing me
287 test if the abasic site is within a short 5' overhang, when this activity is necessary and sufficient
288 ssed DNA end with a 40-nucleotide (nt) ssDNA overhang, where it localized to the ssDNA-dsDNA junction
290 omeres terminate with a single-stranded 3' G overhang, which can be recognized as a DNA damage site b
291 nded DNA or duplex DNA with a four-base pair overhang, which is consistent with the known structure o
292 ent directions producing single-stranded DNA overhangs, which are potential intermediates for the syn
293 ed to yield long single-stranded DNA (ssDNA) overhangs, which are quickly bound by replication protei
294 ed extremely slowly, indicating that short G-overhangs, which are typical for most of the cell cycle,
295 ween the two DNA strands and gripping the 3'-overhang while Bax1 interacts with the 5'-overhang.
296 led duplexes containing a 5' single-stranded overhang with an excess of unlabeled DNA to initiate the
299 stimulated Artemis to cut near the end of 3' overhangs without the involvement of other NHEJ proteins
300 e advantages enable the fabrication of large overhangs without the use of supports, reduction of the