ライフサイエンスコーパス: package

1 ated to deal with tracking data or 'tracking packages'.

2 I, and through the JASPAR2020 R/Bioconductor package.

3 PRAM is implemented as an R/Bioconductor package.

4 he method is available as part of the apLCMS package.

5 bbins-Monro algorithm in the R software mirt package.

6 is cross-platform and can be installed as R package.

7 l data analysis and vignette document in the package.

8 s 6.4 x 10(-3), as calculated by the Genalex package.

9 anual and a vignette are provided within the package.

10 e flexibility and usability of this software package.

11 emented in the open source ibd-ends software package.

12 ty Control dasHbOard'), a comprehensive QC R-package.

13 munication was implemented using the rsocket package.

14 the geNorm qbase + 2 and NormFinder software packages.

15 ning the models is provided as a series of R packages.

16 ing data processing with a suite of software packages.

17 e and Qiita, open-source, validated software packages.

18 stical methods powered by other Bioconductor packages.

19 mported and analysed using multiple software packages.

20 d promote infectious SFV production and gRNA packaging.

21 le in Gag:RNA interactions leading to genome packaging.

22 in gag, counteracts APOBEC3 by blocking its packaging.

23 ation control in food chain, water and smart packaging.

24 al for transduction, capsid assembly, or DNA packaging.

25 , ranging from wearable electronics to smart packaging.

26 iruses, governing capsid assembly and genome packaging.

27 On the basis of a compelling data package, 20 (AM-6494) was advanced to preclinical develo

28 n of all most widely used PAC methods in one package, (3) the statistical analysis of PAC measures, a

29 biologically-relevant NHP brain circuits by packaging a fragment of human mutant HTT, the causative

30 deration is given to reducing the impacts of packaging across its entire life cycle, most of the focu

31 We compared an adaptable implementation package against an implementation control and assessed e

32 te wireless telemetry, and compatible device packaging-all requiring advanced solutions along a trans

33 The package also includes quality control and utility functi

34 The package also provides visualization and summary tools fo

35 We have developed a GPL-3 licensed R package and a Shiny Application to enable users to quick

36 The package and application are open-source; code is availab

37 the microenvironment cell population-counter package and compared with immunohistochemistry.

38 Polymeric vehicles that efficiently package and controllably release nucleic acids enable th

39 and others have recently harnessed to cross-package and deliver recombinant genomes derived from ano

40 We implemented this approach in an R package and demonstrated its utility in multiple CRISPR/

41 y demonstrates the core functionality of the package and highlights the capabilities for producing in

42 Both the package and image datasets are freely available on GitHu

43 The software is implemented as an R package and is supported on Linux, MacOS and Windows.

44 Histones serve to both package and organize DNA within the nucleus.

45 g features were identified using the limma R package and samples were classified using an unweighted

46 We present hypercluster, a python package and SnakeMake pipeline for flexible and parallel

47 The Bayesian Cost-Effectiveness Analysis package and the Sheffield Accelerated Value of Informati

48 program problem and solve it using the PuLP package and the standard CPLEX algorithm.

49 n the surface of ham slices that were vacuum-packaged and flashed with 2.1, 4.2 and 8.4 J/cm(2).

50 cing studies often involve multiple software packages and lack pathway architecture.

51 mework, has plugins for the QIIME2 and QIITA packages and produces both taxonomy and gene abundance p

52 ed in the R language utilizing the Tidyverse packages and Shiny for the user interface.

53 to be done in the development of easy-to-use packages and simple online websites for carrying out pow

54 ol for watching an RNA genome direct its own packaging and encapsidation by proteins.

55 impacts throughout the entire life cycle of packaging and FSW were analyzed.

56 al impacts across the full life cycle of the packaging and FSW.

57 ot correlate with environmental benefits for packaging and FSW.

58 bic interface of A3G does not abolish virion packaging and HIV-1 restriction.

59 provide further evidence to support that FHV packaging and replication are highly coordinated and int

60 one RNA-binding mode is critical for virion packaging and restriction of HIV-1 by A3G.

61 requiring the LC3-conjugation machinery for packaging and secretion.

62 odified tuxedo pipeline (hisat 2 + cufflinks package) and infer GRNs from these processed data.

63 The devices are fabricated, packaged, and released in parallel using photolithograph

64 eplication, transcription regulation, genome packaging, and during the latent phase, site-specific in

65 cate that genes involved in the replication, packaging, and release of phage particles have been pref

66 with the capsid and the subsequent cleavage, packaging, and stable incorporation of the viral genome

67 nd self-targeting approaches in one software package; and (iv) it provides a user-friendly web interf

68 Active packaging (AP) provides the opportunity for interaction

69 bioplastic properties to broaden their food packaging applications are critically examined.

70 es in bioplastic materials, focusing on food packaging applications.

71 osan films may be considered for active food packaging applications.

72 In addition, high-definition JavaScript packages are employed to enhance information visualizati

73 tween bio- and conventional plastics in food packaging are elucidated.

74 ormalized spectral abundance factors using R-package, as well as assayed important antioxidants.

75 ere, we reviewed and described each tracking package based on a workflow centred around tracking data

76 and 14 days) on quality attributes of vacuum-packaged beef from Nellore cattle were evaluated.

77 vational study, monthly longitudinal data on packaged beverage purchases were collected from urban-dw

78 Here we introduce a new software package, Brian2GeNN, that connects the two systems so th

79 e RNA progeny of Brome mosaic virus (BMV) is packaged by a single capsid protein (CP) into three type

80 Genome packaging by nucleosomes is a hallmark of eukaryotes.

81 To address this need, we created a software package called ClonoMatch that facilitates rapid searche

82 functionalization screens available as an R package called malacoda (available from github.com/andre

83 We are developing a software package called MoMA (for Molecular Motion Algorithms), w

84 loped a suite of interoperable open-source R packages called the <monospace>natverse</monospace>.

85 e this limitation, we present a new software package, called GiniClust3, which is an extension of Gin

86 plement our new algorithms in a new software package, called VALOR2.

87 Many docking software packages can simulate flexible ligand docking, and among

88 al additive such as essential oils in active packaging can be used in the forms of films and coatings

89 resented software is incorporated into the R package 'castor', which is available on The Comprehensiv

90 Efforts typically focus on specific packaging characteristics, or material attributes, commo

91 llic aluminium bags were the least migrating packaging (considering plasticisers and monomers) follow

92 that has a variety of uses in the consumer, packaging, construction, and marine sectors.

93 Packaging, primarily food packaging, consumes the most plastic and is the largest

94 d, within the r software alone, we listed 58 packages created to deal with tracking data or 'tracking

95 , incorporated into the stand-alone software package D/STAIN, analyzes ITC demicellization curves by

96 may be used for improving ab-initio software packages dedicated to numerical simulations in physical-

97 the cell, and the cell's ability to tolerate packaging defects.

98 in regulation of rhodopsin incorporation and packaging density into disc membranes, a process which,

99 dontal phenotypes was calculated using the R package DESeq2.

100 vLUME is a virtual reality software package designed to render large three-dimensional singl

101 re, we first show that metabolomics software packages developed for automated optimization of XCMS pa

102 A viruses that simultaneously synthesize and package DNA with rolling circle and rolling circle-like

103 d axial CT scans are modeled with a software package-DOCTORS, which solves the linear Boltzmann equat

104 Links to additional resources, tutorials and package documentation are provided in the 'Python packag

105 on a user survey, we reviewed the quality of packages' documentation and identified 11 packages with

106 scds is implemented as a Bioconductor R package (doi: 10.18129/B9.bioc.scds).

107 Furthermore, most standard fMRI analysis packages (e.g., AFNI, FSL, SPM) focus on preprocessing a

108 nally efficient techniques with other Python packages (e.g., Nilearn, Scikit-learn) for file handling

109 assemble into virions capable of efficiently packaging either its 8 kilobase genome or non-viral DNA.

110 The implementation package embedded behaviour change techniques within audi

111 The results of both packages enabled a precise prediction of biological age

112 nducted correlation analyses across pairs of packaging events.

113 P algorithm and how to use the open-source R package FLOWMAPR via its GUI or with text-based commands

114 PyIOmica is an open-source Python package focusing on integrating longitudinal multiple om

115 These packages follow the guidelines from the MIxS standards d

116 could change the organoleptic properties of packaged food.

117 nt of sugars and sodium in several groups of packaged foods and beverages.

118 US dietary sodium comes from restaurant and packaged foods.

119 computational modeling platform and software package for combination treatment strategies with flexib

120 computational modeling platform and software package for combination treatment strategies with flexib

121 Medusa builds on the COBRApy package for constraint-based reconstruction and analysis

122 etIDfyR, an open-source and cross-platform R package for in silico drug phase I/II biotransformation

123 MutEnricher is a flexible software package for investigating somatic mutation enrichment th

124 litate this task, spectrum_utils is a Python package for mass spectrometry data processing and visual

125 lementations are provided within RSMLM, an R package for pointillist-based analysis and batch process

126 rad, a deep learning-based image recognition package for pollen tetrad analysis that enables high-thr

127 Here, we present LogoJS, a Javascript package for rendering customizable, interactive, vector-

128 Data analysis was done using Statistical Package for Social Sciences software version 20.

129 Here, we present Medusa, a Python package for the generation and analysis of ensembles of

130 An accompanying R package for the model has been developed using the proba

131 re analyzed with the help of the Statistical Package for the Social Sciences version 20.0 software pr

132 nt Stairway Plot 2, a cross-platform program package for this task using SNP frequency spectra.

133 CellNOpt is a collection of Bioconductor R packages for building logic models from perturbation dat

134 This platform offers a wide selection of packages for different types of biological and experimen

135 stics such as material choice or mass of the packaging/FSW products can have higher influence in dete

136 om a breast cancer patient, and overview all package functionalities.

137 ns occur at multiple RNA sites during genome packaging; furthermore, there are functionally redundant

138 ly, we develop an efficient computer program package, gamevar.f90, for estimating gametic variance fo

139 Type 1 (B1(V)) and type 2 (B2(V)) virions package genomic RNA1 and RNA2, respectively, while type

140 thonanywhere.com) and a user-friendly Python package (github.com/gussow/seeker) allowing researchers

141 and was statistically comparable with two R packages, GLMMadaptive and glmmTMB, that use numerical i

142 For this reason, we developed the R package GOxploreR.

143 (DCP3), published two model health benefits packages (HBPs).

144 We provide an R-package implementing the WSH scores for integration into

145 nomes are composed of several segments, each packaged in a distinct viral particle.

146 Beverages, often packaged in plastic, can be a source of microplastics in

147 Additionally, the package includes an implementation of visibility graphs

148 icensed and can be installed from the Python package index or the bioconda repository.

149 CRNT4SBML is available via the Python Package Index.

150 able through Bioconda, GitHub and the Python Package Index.

151 ional plastics is now a priority of the food packaging industry.

152 contain additives which may migrate from the package into the food and then be ingested by the consum

153 cytidine deaminase (CD) APOBEC, binds RNA to package into virions and restrict HIV-1 through deaminat

154 ancer cells, nucleic acids must generally be packaged into a vehicle, such as a nanoparticle, that wi

155 genome editing, and is compact enough to be packaged into an AAV for genome editing.

156 during cell-cycle phases when genomic DNA is packaged into nucleosomes.

157 proteome that is dynamically and selectively packaged into outer membrane vesicles (OMVs).

158 eparate datasets, that replay sequences were packaged into transient bursts occurring selectively dur

159 r-bound integral membrane cargo prior to its packaging into a nascent transport carrier.

160 ate endosomes, and a dramatic decrease in ER packaging into autophagosomes was observed.

161 ome, maturation of viral proteins and genome packaging into infectious progeny, and egress and dissem

162 binding to this site and severely impair RNA packaging into virus-like particles.

163 The ipcoal package is a powerful tool for posterior predictive data

164 This package is also capable of annotating these variants to

165 The SCGid package is implemented in python and R.

166 A flexible and efficient R package is needed for analyzing processed multilevel or

167 These misperceptions include: (1) plastic packaging is the largest contributor to the environmenta

168 plementation of the methodology, the scPCA R package, is made available via the Bioconductor Project.

169 An R package "jointsum" implementing the proposed method is p

170 d data to demonstrate the performance of the package kernel isotopic niches in r (rKIN) under various

171 R packages klic and coca are available on the Comprehensiv

172 ipal Component Analysis and the bioconductor package limma.

173 slipidemia by hydrolyzing triglycerides from packaged lipoproteins.

174 f high-energy-density and high-power-density packaged long-cycle-life rechargeable microbatteries rem

175 affect the quality and shelf life of vacuum packaged low processed rainbow trout (Oncorhynchus mykis

176 In this study, a biopolymer-based packaging material was prepared using a casting method,

177 exploitation as environmentally benign food packaging material.

178 Improvements in the effectiveness of packaging materials can help to prevent foodborne pathog

179 ter shelf life compared to conventional food packaging materials.

180 tic has the most environmental impact of all packaging materials; (3) reusable products are always be

181 We developed packaging, measurement systems, and methodology to enabl

182 omputational pipelines based on the software packages MeDeCom, EDec, and RefFreeEWAS.

183 l-type proportions and implement it in the R package medepir.

184 capitulated in all of the dsDNA viruses that package monomeric genomes from concatemeric DNA substrat

185 in complexes; the maturation complex and the packaging motor complex, respectively.

186 eir requirement for the transition to active packaging motor complex.

187 or Salmonella, yet, less is known about the packaging motor of Pseudomonas-phages that have increasi

188 The genome packaging motor of tailed bacteriophages and herpesvirus

189 sed by different possible mechanisms for the packaging motors: rotation, revolution, and rotation wit

190 This new tool was implemented as a Python package named eCAMI.

191 Here we present an R/Bioconductor package, named struct (Statistics in R using Class-based

192 ions are built on top of the commonly used R packages nlme and MASS, allowing us to incorporate the w

193 All algorithms are implemented in the R package NNLM, which is freely available on CRAN and Gith

194 t software implementing this new approach (R package "NobBS") for widespread application and provide

195 The ability of HPV capsids to package non-viral DNA makes these a useful tool for deli

196 ethods are implemented in the R/Bioconductor package nondetects.

197 lieved to be involved in membrane targeting, packaging, nucleocapsid binding, and proton transport.

198 ssible to applied geneticists, we wrote an R package of computer software, HiGwas, designed to analyz

199 With a clear package of double-duty actions now identified, there is

200 e replicated viral genome and the subsequent packaging of a unit-length HSV genome.

201 important role in deciding the nature of the packaging of chromatin.

202 mediates is critical for the replication and packaging of flavivirus RNA genomes.

203 on-dependent histones (RDH) are required for packaging of newly synthetized DNA into nucleosomes duri

204 that multiple NC binding sites affected RNA packaging; of the sites tested, those located within ste

205 are implemented in custom code and separate packages, often requiring different software and languag

206 The package only requires the multiple sequence alignment of

207 s been limited by their incompatibility with packaging or form factors necessary for specific applica

208 tic genome-capsid associations could inhibit packaging or genome release during the subsequent infect

209 ue code contributors, thousands of dependent packages, over 100,000 dependent repositories and millio

210 This polymer system poly(quinine-co-HEA) packages pDNA and shows exceptional cellular internaliza

211 lation-based power assessment strategy and R package powmic, which considers the complexity of microb

212 Finally, seagull -the R package presented here- produces complete regularization

213 The bigPint package presents modernized versions of scatterplot matr

214 Packaging, primarily food packaging, consumes the most p

215 trates can be integrated using a wafer-level-packaging process and achieve higher power density than

216 all crAss-like phages encode a large virion-packaged protein(2,4) that contains a DFDxD sequence mot

217 The package provides a convenient and reliable interface for

218 The package provides a suite of plotting methods and enables

219 This package provides the novel utility to integrate data-dri

220 he results indicate that stochastic tegument packaging provides a mechanism enabling probabilistic be

221 Bayesian and frequentist analysis via the R packages R-INLA and glmmTMB, we hope to make efficient e

222 that in some systems, DNA rotates during the packaging reaction, but most current biophysical models

223 ve that although in the initial steps of the packaging reaction, the torsional strain of the genome i

224 fitness by ensuring the product fidelity of packaging reactions.

225 In previous works, the software package REDCRAFT has been presented as a means of harnes

226 nuclear/cytoplasmic proteins involved in DNA packaging, replication, and protein synthesis were detec

227 ailable as an R package via the Bioconductor package repository.

228 stem cells (hiPSCs), and develop a software package (rgenie) to analyse the data.

229 develop a novel approach together with an R package, RiboDiPA, for Differential Pattern Analysis of

230 ge documentation are provided in the 'Python package' section of the website.

231 In Asia, high-input technology packages secured a tripling of rice output, with germpla

232 rtant markers for food spoilage, thus, an on-package sensor for biogenic amine detection is crucial f

233 Here, we present a highly efficient R-package seqminer2 for querying and retrieving sequence v

234 The regutools package serves as a bridge between RegulonDB data and th

235 emonstrate Cp binding to the proposed genome packaging signal (PS), mutagenesis experiments show that

236 Specific recognition of a gRNA packaging signal (Psi) has been proposed to stimulate th

237 nal deletions, 3 (1.0%) had deletions in the packaging signal/major splice donor site, and 7 (1.0%) w

238 tes the efficacy of rewiring influenza virus packaging signals for creating vaccines with more neuram

239 n the viral surface, and that rewiring viral packaging signals-thereby increasing the NA content on v

240 mall extracellular vesicles that efficiently package siRNA can significantly reduce its therapeutic d

241 itionally, the EVs were found to selectively package small RNAs (sRNA), which were protected within t

242 ware version 23 (IBM Corp, Armonk, NY) and R package software version 3.4.3 (R Foundation for Statist

243 reatly improved by the use of containers for packaging software and data dependencies.

244 Our method, implemented in an R package, SpectralTAD, detects hierarchical, biologically

245 hods of nanostructures as food additives and packaging stuffs along with pros and cons of their appli

246 i, which could be extended to develop active packaging systems.

247 We developed simurg, an R package that allows to simulate bacterial pangenomes usi

248 CoMut, a stand-alone, object-oriented Python package that creates comutation plots from arbitrary inp

249 valuate a comprehensive method qualification package that includes intra- and inter-run precision and

250 emitting diodes (LEDs) into a 100-mum-scale package that is powered by and communicates with light.

251 simplePHENOTYPES is a R/CRAN package that makes it possible to simulate multiple trai

252 re we present ushr, a free and open-source R package that models the decline of HIV during antiretrov

253 rainiak.org), an open-source Python software package that seamlessly integrates several cutting-edge,

254 es, we developed simplePHENOTYPES, an R/CRAN package that simulates pleiotropy, partial pleiotropy, a

255 minate these methods by sharing two software packages that integrate infant-friendly cognitive tasks

256 n ideal genotypic, phenotypic and germplasm 'package' that multi-parent populations should feature to

257 To assist the critical challenge of hermetic packaging, the microbattery is infilled with a gel elect

258 RTANCE Double-stranded DNA viruses typically package their genomes into a preformed capsid.

259 er is available in addition to third parties packages, they do not provide a complete quality control

260 n conventional electronic structure software packages: those that treat materials as extended, period

261 available as a web portal and a standalone R package to allow experimental and computational scientis

262 Here, we present the regutools R package to facilitate programmatic access to RegulonDB d

263 mance data analysis pipelines or as a Python package to implement new tests and analyses.

264 We developed corto, a fast and lightweight R package to infer gene networks and perform MRA from gene

265 developed the primaryTranscriptAnnotation R package to infer the transcriptional start and terminati

266 on in Version 3 of the CoGAPS R/Bioconductor package to overcome the computational limitations of Bay

267 N platform coupled to the NanoOK RT software package to perform shotgun metagenomic sequencing and pr

268 We apply this package to reveal associations between functional annota

269 this study presents GenEpi, a computational package to uncover epistasis associated with phenotypes

270 l builds on the lessons learned with similar packages to provide a large feature set, a flexible obje

271 the current state of knowledge pertaining to packaging, transport and function of RNAs in extracellul

272 a solution in the form of an R/Bioconductor package tximeta that performs numerous annotation and me

273 Plastic packaging typically consists of a mixture of polymers an

274 MeTaQuaC is provided as an open source R package under a permissive MIT license and includes deta

275 A comprehensive study on packaging used in commercially available milk products f

276 y, we demonstrated the utility of the Python package using Staphylococcus aureus strains that are res

277 guanosines at NC binding sites in RNA genome packaging using stable cell lines expressing competing w

278 Plastic food packages usually contain additives which may migrate fro

279 AssessORF is available as an R package via the Bioconductor package repository.

280 ional regulation to jointly mandate front-of-package warning labels, restrict child-directed marketin

281 observed that a multifaceted implementation package was clinically and cost-effective for targeting

282 (Lambda-Mu-Sigma) function within R's GAMLSS package was used to produce age-based FFMI and FMI growt

283 s entire life cycle, most of the focus is on packaging waste or feedstock substitution.

284 and halogens, of commonly generated plastic packaging waste streams in European sorting facilities.

285 stics and macroplastics from identifiable PE packaging were collected in the Atlantic Ocean and compa

286 We present ftmsRanalysis, an R package which provides an extensive collection of data f

287 The succession comprises channel and barform packages which together demonstrate that river depositio

288 We also developed a package, which we call MetaProfiler, that corrects for f

289 atalysis, cosmetics, life sciences, and food packaging, which can also benefit from having sustainabl

290 ent CAFE 5, a completely re-written software package with numerous performance and user-interface enh

291 PLD-MNA was packaged with a mixture of powdered peanut allergen (PNA

292 e membrane-bound, spherical, nano-sized, MVs packaged with a select array of bioactive macromolecules

293 The daughter DNA duplexes are packaged with an equal amount of parental and newly synt

294 Simulated GWAS datasets are also packaged with the pipeline for user training tutorials a

295 of packages' documentation and identified 11 packages with good or excellent documentation.

296 pproaches including a commercially available package, with experimental verification (for three disti

297 We present IBDkin, a software package written in C for estimating kinship coefficients

298 form analyses using the newly developed nbda package written in the R programming language.

299 analysis using commercial and free software packages yielded a mean theta = 51.1(4)%, ranging from 4

300 hod is implemented in the freely available R package zigzag.