ライフサイエンスコーパス: parameterization

1 net ecosystem exchange (NEE) (used in model parameterization).

2 odel counterparts can then be used for model parameterization.

3 coverage, reducing thus the need for manual parameterization.

4 erties with little or no dependence on model parameterization.

5 ic classifications of the sequences to model parameterization.

6 l alpha-helical coiled coils using the Crick parameterization.

7 ns for PDB file conversion, modification and parameterization.

8 ting a potential path towards improved model parameterization.

9 -seq, etc.) without the need for specialized parameterization.

10 amics on new sequences not used during model parameterization.

11 rmacopeia (USP) Apparatus 4 to support model parameterization.

12 em equilibria differ based on specific model parameterization.

13 state network modeling due to simplicity in parameterization.

14 rest in Colorado to develop a dry deposition parameterization.

15 ct enhancers in different species without re-parameterization.

16 g the root-stem-leaf continuum will simplify parameterization.

17 mparison with previously assumed growth rate parameterizations.

18 lternate structural assumptions and mediator parameterizations.

19 observed in laboratory chambers into robust parameterizations.

20 ut for 8 ns with three different force field parameterizations.

21 om this theory under a variety of functional parameterizations.

22 he disequilibrium and inbreeding coefficient parameterizations.

23 be less mathematically tractable than other parameterizations.

24 calculated by submodels called land surface parameterizations.

25 various similarity search methods and their parameterizations.

26 asis functions that have nonlinear (unknown) parameterizations.

27 tionship, but they differ in assumptions and parameterizations.

28 ifferent vegetation cover and its associated parameterizations.

29 Despite significant advances in force field parameterization, achieving a consistent balance of mole

30 n uncertainty analysis based on our best-fit parameterization admits both possibilities: continuously

31 ew sequence/structure information without re-parameterization after each RPS update.

32 regulations using the newly developed K-FIT parameterization algorithm.

33 on, such structure is mostly subsumed in the parameterization allowing us to make policy predictions

34 The parameterization allows steady states to be calculated b

35 Sterimol parameterization also allows for greater mechanistic ins

36 ld be a priority, along with improving model parameterization and constraints.

37 modeling approach, based on an interpretable parameterization and driven by careful consideration of

38 Concomitantly, the parameterization and efficiency of the methods have mark

39 ence, and an eddy-covariance tower for model parameterization and evaluation.

40 tems-level molecular data, and develop a new parameterization and fitting strategy that is useful for

41 This greatly reduces model parameterization and increases deconvolution accuracy by

42 function technology relies heavily on ad-hoc parameterization and manual curation by experienced mass

43 ted community dynamics models, regardless of parameterization and model assumptions.

44 A simple model with this parameterization and no additional nonlinearities reprod

45 nsidered are the form of force fields, their parameterization and performance, simulations of organic

46 ls we highlight the specific issues of model parameterization and propose this process can be separat

47 e, for example, to improved vegetation model parameterization and provides an enhanced framework to l

48 18)O method offers a flexible tool for model parameterization and provides an opportunity to refine o

49 als, health response functions, and metrics; parameterization and reporting; approaches to uncertaint

50 dels of bTB have relied on ad-hoc methods of parameterization and used a single model structure (SORI

51 airwise interactions, facilitating empirical parameterization and validation of our models.

52 Parameterization and validation used the best available,

53 the integration of the data needed for model parameterization and validation.

54 These parameterizations and associated source profiles are des

55 Although the model parameterizations and assumptions (based on limited huma

56 the same kernel approach but with different parameterizations and functional forms.

57 global data needed to improve mountain wave parameterizations and hence global climate and forecast

58 Our results suggest that parameterizations and models should be updated to includ

59 on, mainly owing to poorly constrained model parameterizations and uncertainties in the response of t

60 otential (AP) are complex (resulting in over parameterization) and varied (leading to dissimilar pred

61 rithmic approach based on canonical response parameterization, and illustrate how it may be used on D

62 ell segmentation, topology fixing, spherical parameterization, and shape representation) are closely

63 between 1973 and 2016 for model initiation, parameterization, and validation.

64 non-unique choices for discrete algorithms, parameterizations, and coupled contributing processes th

65 as convection using subgrid models known as parameterizations, and these parameterizations contribut

66 (Spe); (b) using a generic, knowledge-based, parameterization applicable in the Central European regi

67 We argue that current methods of behavioral parameterization are limited in their capacity to replic

68 lical structures, which reduces to the Crick parameterization as a special case.

69 he feasible parameter range, identifying key parameterization aspects warranting attention--here the

70 did not contribute to our knowledge on model parameterization at all.

71 bration of C(surf) to measured E, or further parameterization based on metrics such as leaf area, sen

72 A parameterization based on occupation of angular momentum

73 verity tool and denote the standard error of parameterization based on the delta method.

74 Furthermore, a parameterization based on the global dataset of PSD shap

75 us, the way these metrics are used for model parameterization can be problematic.

76 ive force fields, which combine four protein parameterizations (CHARMM36, CHARMM22*, CHARMM22/cmap, a

77 models known as parameterizations, and these parameterizations contribute substantially to uncertaint

78 ript abundances were analyzed by group means parameterization, controlling the false discovery rate b

79 Our findings show the deficiencies of parameterizations currently used in higher-scale models,

80 ons compared to the simple, temperature-only parameterizations currently widely used.

81 By using a parameterization, dimensionality reduction, and clusteri

82 large range of model structures, tuning, and parameterization employed, all simulations predicted hyd

83 Both the quantification and parameterization enhance our understanding of DE and fac

84 tions that are distinctly different from the parameterization experiments.

85 els due to differences in radiative transfer parameterizations, explaining a substantial portion of m

86 chanistic models often converged on best-fit parameterizations far different from the known parameter

87 From this, we developed a parameterization for biomass burning BC and combined it

88 more detailed pool construction but rougher parameterization for carbon allocation and decomposition

89 s can be estimated using a novel hazard rate parameterization for mark-recapture models.

90 We present a revised observationally driven parameterization for regional and global aerosol models.

91 The results provide a parameterization for the explicit representation of grow

92 lying physical chemistry as well as accurate parameterizations for atmospheric modeling.

93 We present new source-specific SOA yield parameterizations for these unspeciated emissions.

94 the most effective clustering method and its parameterization, for a particular set of gene expressio

95 from the nature of the individual component parameterizations; for the polarizable force field, we o

96 tions, characteristics, relationships and re-parameterization formulas.

97 ide range of functional forms and methods of parameterization, four potentials that attempt to detect

98 Here we use a random forest to learn a parameterization from coarse-grained output of a three-d

99 and those that do rely on understanding and parameterization from temperate species.

100 also demonstrate the potential for learning parameterizations from global high-resolution simulation

101 Machine learning of new parameterizations from high-resolution model output is a

102 ing a commonly accepted solar UV variability parameterization give much smaller OH variability ( appr

103 missing the effect of constraints on angular parameterization hampers efforts to quantitatively eluci

104 del output is a promising approach, but such parameterizations have been prone to issues of instabili

105 Over the last 20 years, these parameterizations have evolved from simple, unrealistic

106 on, which uses an adjoint aerosol activation parameterization, improves agreement with independent N(

107 s finding has important implications for the parameterization in active gel theories that describe ac

108 These findings require improved NPF parameterization in atmospheric models.

109 o acids validates the use of this structural parameterization in free energy calculations for folding

110 Here, we implement a physically motivated parameterization in three ice sheet models and simulate

111 mplemented empirical drought and O(3) stress parameterizations in a coupled stomatal conductance-phot

112 Our findings affect model parameterizations in climate change mitigation schemes (

113 Dry deposition parameterizations in most global models were developed w

114 e of forcing heat stress algorithms, current parameterizations in most models favor the use of daylig

115 atory: It can serve as a basis for improving parameterizations in regional and global models.

116 , I show that incorporating a dynamic ligand parameterization inverts the modelled MOC-atmospheric CO

117 Model parameterization is accomplished through replica exchang

118 Parameterization is carried out using a genetic algorith

119 Further study of EDI effects on PLCS parameterization is required.

120 The classic doctrine of parameterization is that a parameter is constant.

121 The parameterization is used together with existing framewor

122 the elastic network model, with the popular parameterization, is not best suited for systems that do

123 condition in terms of a notion of symmetric parameterization, leading to a broadening and unificatio

124 The parameterization leads to stable simulations at coarse r

125 However, different models and model parameterizations may provide different prediction of ou

126 By coupling an existing parameterization model of ektacytometry to an artificial

127 ith corresponding imperfect eddy-diffusivity parameterization models are utilized here.

128 een shown to be intrinsically asymmetric, so parameterization must have its limits.

129 forecast models or climate simulations; new parameterizations must be developed that accurately repr

130 As an example we describe the parameterization of a simple CG MD model of an RNA hairp

131 ys to enable meta-analyses and to facilitate parameterization of analyses and models.

132 k by Barton and Turelli) and the cytonuclear parameterization of Asmussen, Arnold, and Avise and exte

133 We alleviate this difficulty with a new parameterization of backbone conformational space, which

134 We describe a novel parameterization of Bayesian networks that uses random e

135 that the latter is suitable for force-field parameterization of carbohydrates.

136 Francis Crick's global parameterization of coiled coil geometry has been widely

137 rn-oriented approach to model definition and parameterization of complex agent-based models.

138 The study highlights the importance of parameterization of detailed models of ?-cell excitabili

139 The analysis provided a mesoscopic parameterization of distance changes, free energy change

140 our forests in the face of drought, and the parameterization of drought in earth system models for i

141 dy highlights the necessity for developing a parameterization of dust IRI for climate studies.

142 al traits, in particular with respect to the parameterization of dynamic root architecture models.

143 Indeed, we find that by changing the parameterization of each model its correlation with actu

144 il C dynamics with implications for both the parameterization of earth system models (ESMs) and the i

145 Recent advances include improvements in the parameterization of enthalpy, entropy and heat capacity

146 on of newer methods and technologies such as parameterization of facial characteristics and comparati

147 e basal ganglia are directly involved in the parameterization of force during movement and support a

148 Surprisingly, this parameterization of force magnitude showed limited gener

149 eb population models are rather sensitive to parameterization of functional response in predation ter

150 one released entirely after development and parameterization of JThread.

151 bial models can thus achieve more reasonable parameterization of key microbial processes and subseque

152 wo-step computational pipeline for the rapid parameterization of kinetic models of metabolic networks

153 The development and parameterization of LM3PPA-TV drew on extensive datasets

154 For small panels, the probabilistic parameterization of LS enables modeling the uncertaintie

155 Here we couple an experimentally constrained parameterization of mantle melting in the presence of vo

156 These findings could improve parameterization of mathematical models to better predic

157 data, allowing for unprecedented accuracy in parameterization of mechanistic and predictive models an

158 Using a parameterization of melting experiments on peridotite wi

159 albopictus to DENV infection and will assist parameterization of models for predicting disease risk i

160 These results are highly relevant for the parameterization of molecular mechanics force fields whi

161 computational mutagenesis by controlling the parameterization of molecular simulations across multipl

162 y leveraging a new approach to time-resolved parameterization of neural spectral activity, we find ev

163 iments provide a near complete thermokinetic parameterization of opening: the enthalpy change (DeltaH

164 eric sulfate injection mass that is used for parameterization of paleoclimate models.

165 As such, these findings will enable parameterization of predictive models for future CO(2) s

166 vironmental variables loosely constrains the parameterization of process-based biogeochemistry models

167 n Africa BC emissions, with implications for parameterization of satellite fire and bottom-up emissio

168 y for the side branching of networks and his parameterization of self-similar side-branching.

169 th observations and suggest that the correct parameterization of sigma w is critical to simulate real

170 nologies such as mass cytometry increase the parameterization of single-cell measurements, the scalab

171 Here we use a mechanistic parameterization of soil NO(x) emissions combined with t

172 ond derivative spectroscopy as a function of parameterization of spectral data.

173 lobal climate model including an interactive parameterization of stratospheric chemistry show how upp

174 ave lacked adequate exploration of the shape parameterization of sufficient dimensionality to yield f

175 eaf-level modeling demonstrated that current parameterization of TBMs resulted in a two-fold underest

176 chance and incorporate our findings into the parameterization of the algorithm and the statistical ev

177 bility was incorporated through an algebraic parameterization of the backbone.

178 ple nonlinear zonal advection with no ad hoc parameterization of the background sea-surface temperatu

179 ple nonlinear zonal advection with no ad hoc parameterization of the background SST gradient is intro

180 ory, which are obtained using a quaternionic parameterization of the cavity method.

181 We tested the litter decomposition parameterization of the community land model version 4 (

182 nd to climate change together; (ii) existing parameterization of the DBEM might implicitly incorporat

183 ermodynamic analysis based upon an empirical parameterization of the energetics.

184 and temporal filters and (2) low-dimensional parameterization of the factorized filters.

185 Furthermore, we implement a parameterization of the first steps of growth in a globa

186 A structural parameterization of the folding energetics has been used

187 Parameterization of the forcing remains a major source o

188 ains were constructed, and a structure-based parameterization of the free energy change due to mutati

189 High-content image analysis and parameterization of the in situ PLA signals in over 1 mi

190 Finally, a tailored neural network parameterization of the MFG/MFC solution helps us avoid

191 Parameterization of the model across a range of forest e

192 ased on the omega ratio are invariant to the parameterization of the model and thus unaffected by bia

193 bustness of our results to the structure and parameterization of the model is discussed.

194 er and more reliable data sets for N.crassa, parameterization of the model used in FFG to produce a m

195 of available experimental data for a unique parameterization of the network.

196 We propose an empirical parameterization of the organic-bearing particle concent

197 s metasurfaces, and careful construction and parameterization of the physical structure is critical i

198 lting point depression to constrain a simple parameterization of the process.

199 Greenland ice sheet, using a newly developed parameterization of the relation between meltwater runof

200 est vegetation, indicating a need for better parameterization of the responses of cloud forest vegeta

201 considerably in vertical direction, a simple parameterization of the total air-sea momentum flux is u

202 The resulting parameterization of the trajectories for both experiment

203 The parameterization of the transition states (TSs) for the

204 The parameterization of the turbulent energy flux between ar

205 prediction problems, since the probabilistic parameterization of the uncertainty space is not unique

206 test the neutral theory that combines field parameterization of the underlying population dynamics w

207 dies provides unique opportunities for model parameterization of the unobservable nature of HPV infec

208 ing of the easterly trade wind, a stochastic parameterization of the wind bursts including a mean eas

209 First, a stochastic parameterization of the wind bursts including both weste

210 eins and ligands, explicitly avoiding direct parameterization of their chemical structures.

211 ed a framework that allows for the efficient parameterization of these kinetics using particle simula

212 s (using a simple file format) and automated parameterization of those grammars from training data (v

213 neglecting the entropy factor in the current parameterization of UNRES.

214 The improved parameterization of unresolved features of tropical conv

215 spite advances in quantitative biology, full parameterization of whole-cell models is not yet possibl

216 Furthermore, a new parameterization of wind-driven diapycnal mixing in the

217 crystal structures and an ab initio-derived parameterization of zinc in HLADH.

218 sing appropriately designed non-centered, re-parameterizations of a given epidemiological process, on

219 ngs, we construct 124 cell-specific variants/parameterizations of a hERG model at 25 degrees C.

220 In addition, the relationship between parameterizations of complex diseases, by means of penet

221 structure in the abundance data and various parameterizations of covariates' prior probabilities of

222 y grounded framework with which to constrain parameterizations of diverse microbial metabolisms.

223 on, ecosystem structure, and region-specific parameterizations of e-ratio are key factors to quantify

224 the problem of inconsistent and low-coverage parameterizations of genome-scale cellular models.

225 tatory (E) and inhibitory (I) neurons, using parameterizations of increasing complexity.

226 actionation (DIF) and implementing different parameterizations of local transverse dispersion.

227 Such approaches often rely on simple parameterizations of one-dimensional bond potentials, as

228 Sensitivity analyses of diverse parameterizations of our model framework, with and witho

229 ynergistically calibrate and assess regional parameterizations of phenology in models.

230 nd acceleration or velocity-and observations-parameterizations of qualitative shaking reports.

231 62 protein-protein complexes, with different parameterizations of soft Lennard-Jones potential and tw

232 ervised clustering methods based on standard parameterizations of spontaneous interspike interval (IS

233 Parameterizations of the average and distribution of sel

234 (NPZ) concentration, incorporating sub-grid parameterizations of the biological processes.

235 ractions require simple, physically accurate parameterizations of the cloud condensation nuclei (CCN)

236 del allowed us to determine, under different parameterizations of the model, which patch will be the

237 Developing parameterizations of the net effect of this complex moti

238 ct numerical simulations without small-scale parameterizations of the turbulence for extended layers

239 th single model ensembles based on different parameterizations of the Warwick model run for the 2001

240 Applying our methods, we find that default parameterizations of these widely used estimators can ne

241 , lipidation, peptide stapling, and improved parameterization options of small molecules.

242 d mechanistic understanding and experimental parameterization or brute-force measurement and learning

243 A consistent finding regardless of parameterization or data subset appeared to be an increa

244 the problem of stability: A slight change of parameterization or dataset could lead to marked alterat

245 eas where data are urgently needed for model parameterization or evaluation.

246 momentum throughout the atmosphere and their parameterization or simulation in numerical models provi

247 otein stability from point mutations without parameterization or system-specific customization, altho

248 invasive inverse methods for tissue material parameterization, our model accurately predicts observed

249 mospheric model equipped with a wind turbine parameterization over a 10(5) km2 region in the central

250 find that relative to observations, previous parameterizations overestimated deposition of the accumu

251 Our results yield insights into parameterization performance across length scales, and t

252 different coarse-graining factors shows the parameterization performs best at smaller horizontal gri

253 using new and classic methods of ecological parameterization, phylogenetics and omics in the context

254 ed guidance for a computational analysis and parameterization pipeline.

255 Box model calculations using these new parameterizations predict that NMOG emissions from the t

256 Current model parameterizations predicting SOA yields for IEPOX-SOA do

257 biomass burning BC and combined it with a BC parameterization previously used for fossil fuel emissio

258 ld easily be extended to address other prior parameterization problems in phylogenetics.

259 The parameterization provides a prediction of the time cours

260 This parameterization provides an excellent starting point fo

261 Optimal branch parameterization reduces a known artifact called "homolo

262 This parameterization relies heavily on soil texture, but ove

263 rogress made in force fields, small molecule parameterization remains an open problem due to the magn

264 Here, we introduce Spectral Parameterization Resolved in Time (SPRiNT) as a novel me

265 design physically consistent and scale-aware parameterization schemes for scale invariant quantities,

266 Future land surface model parameterizations should be closely examined for how veg

267 plemented in a global climate model, the new parameterization strongly alters cloud liquid and ice wa

268 the smaller model and explored two different parameterization structures that yield trade-offs in com

269 t for global homologies a single long branch parameterization suffices both for distant and close hom

270 he model, and then rescoring, and a flexible parameterization system that intuitively collapses from

271 We do a careful parameterization, taking into account many factors such

272 good approximation of the optimal nonlinear parameterization that averages out the fast variables an

273 et for the number of causal variants, with a parameterization that can be used to control for potenti

274 n alternative to laboratory-based behavioral parameterization that encompasses the range of environme

275 his report, I propose a conditional-logistic parameterization that generalizes easily to include all

276 ial abundances into a hazard function with a parameterization that not only accounts for the proporti

277 plained by differences in model structure or parameterization that were hypothesized to affect interv

278 This behaviour is contrary to surface flux parameterizations that are currently used in a variety o

279 , and for the calibration of land-atmosphere parameterizations that are dependent on LE/H partitionin

280 d lower-resolution model projections rely on parameterizations that are only loosely constrained by p

281 ambient tracer measurements, and lead to SOA parameterizations that better capture the dependency of

282 ture development of cloud droplet activation parameterizations that go beyond the internally homogene

283 Although data are currently lacking for parameterization, this new model highlights research nee

284 We employed the thermodynamic parameterization to estimate the polar and apolar surfac

285 We apply the parameterization to four higher-order ice-sheet models i

286 To extend the benefits of structural parameterization to other systems, we developed a genera

287 rm CG simulations using different methods of parameterization to show that only by including heteroge

288 Applying these parameterizations to global model output, we find that t

289 culations were replaced with faster reactant parameterizations to increase scalability and, in this c

290 imply that climate models using bimodal SSA parameterizations to wind speed rather than a single SSA

291 ource, yet still amenable to description and parameterization using a mathematical model.

292 es N, 64 degrees W) to evaluate gas exchange parameterizations using an ocean circulation model.

293 estimation via the PROPKA framework, ligand parameterization via PEOE_PB charge methodology, expande

294 while the uncertainty of hydrological model parameterization was more significant for slow component

295 Parameterizations were developed from observations of th

296 For either parameterization, when a conjugate prior was used, the p

297 raction is crucial for precise momentum flux parameterization which directly influences forecast accu

298 This uncertainty is partly due to parameterization, which is an essential procedure for mo

299 This complicates model selection and parameterization, which must be performed against severa

300 le terrestrial biosphere models by improving parameterization within models, and introducing new comp