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1  signal propagation, signal integration, and pathway analysis.
2  aminoacyl-tRNA biosynthesis, as analyzed by pathway analysis.
3 hat incorporates ChIP-seq data into cellular pathway analysis.
4 is such as biomarker discovery and metabolic pathway analysis.
5 ion in control women, according to Ingenuity Pathway Analysis.
6 e Ontology enrichment analysis and Ingenuity Pathway Analysis.
7 hypergraphs in order to facilitate signaling pathway analysis.
8 edgeR and functional analysis with Ingenuity Pathway Analysis.
9 ometry and a novel algorithm of quantitative pathway analysis.
10 alling was suggested to have a nodal role by pathway analysis.
11 icted to be the target gene of miR-124-3p by pathway analysis.
12 CC using functional pair analysis, GSEA, and pathway analysis.
13 ical pathways in CAD was tested by Ingenuity Pathway Analysis.
14 omatography-mass spectrometry) and Ingenuity Pathway Analysis.
15 mal thresholds for hit selection and network/pathway analysis.
16 ncreatic cancer cells, followed by in silico pathway analysis.
17 e identified and categorized using Ingenuity Pathway Analysis.
18 etworks as indicated by functional Ingenuity Pathway Analysis.
19 ve to resistant melanoma cells and performed pathway analysis.
20 aracterization of targeted gene networks and pathway analysis.
21 ed for statistical comparisons and in silico pathway analysis.
22 discriminant analysis (PLS-DA) and Ingenuity pathway analysis.
23 -represented signaling pathways by Ingenuity Pathway Analysis.
24 gery-associated proteins underwent Ingenuity Pathways Analysis.
25 use of the optimum network might falsify the pathways analysis.
26                 RNA sequencing and Ingenuity Pathway Analysis 7 d postbleo in recruited AM implicated
27 synteny view, enrichment analysis, metabolic pathway analysis, a genome browser, etc.
28                                   Biological pathway analysis adjusted for gender, trial randomisatio
29                                    Ingenuity Pathway Analysis affirmed several pathways as differenti
30                               Apart from the pathway analysis algorithm, the fundamental innovation o
31                                              Pathway analysis also identified changes in metabolic pa
32 alysis of the obtained data by the Ingenuity Pathway Analysis also revealed significant functional di
33                                              Pathway analysis and "meet-in-the-middle" approach were
34                          Gene set enrichment/pathway analysis and correlation analysis between gene e
35 fied previously, and provides a workflow for pathway analysis and drug repurposing using GWAS results
36 erstone computational technique for cellular pathway analysis and engineering, EFM application to gen
37                                 Furthermore, pathway analysis and experimental validations identified
38 terized the effect of the novel loci through pathway analysis and found that pathways involved are no
39 nctional enrichment analysis using Ingenuity Pathway Analysis and Gene Set Enrichment Analysis.
40                                              Pathway analysis and immune deconvolution algorithms ide
41                                We integrated pathway analysis and multilevel regional heritability an
42                                      Through pathway analysis and network construction, the functions
43                       By using bioinformatic pathway analysis and signaling assays, here we identifie
44 pdates on extensions and services to support pathway analysis and visualization via popular standalon
45 ed these data using differential expression, pathway analysis and WGCNA.
46 gene expression analysis, data intersection, pathway analysis, and computational approaches including
47 rough protein interaction networks (PIN) and pathway analysis, and consider the potential roles in dr
48  were analyzed by transcriptomics, signaling pathway analysis, and evaluation of chemotherapies.
49 ct of a toxicant through metabolomic-derived pathway analysis, and further, artificial intelligence p
50 riptional profiling of epithelial brushings, pathway analysis, and immunohistochemical analysis of br
51 hen be further analyzed using visualization, pathway analysis, and other bioinformatics tools.
52 ased transcriptional analysis, combined with pathway analysis, and postulate that sAXL accelerates wo
53                                 The proposed pathway analysis approach is available in the Reactome p
54         Herein, we describe a novel Bayesian pathway analysis approach, the algorithm for learning pa
55             Furthermore, the majority of the pathway analysis approaches rely on the assumption of un
56         The article then reviews alternative pathway analysis approaches that aim to reduce the EFM s
57 ys targeted by the perturbation when current pathway analysis approaches utilizing only the TS of the
58 the over-testing concerns arising with other pathway analysis approaches.
59  revisit a fundamental question in signaling pathway analysis: are two molecules "connected" in a net
60 racteristic like bottleneck, degree, GO term/pathways analysis, bio-kinetics simulation, molecular do
61 ate to the pathway enrichment analysis tool 'Pathway Analysis by Randomization Incorporating Structur
62 g the various modeling approaches, metabolic pathway analysis can dissect the basic functional modes
63                                    Metabolic pathway analysis, combined with hydrocarbon compositiona
64                                        Using pathway analysis, compounds associated with arginine and
65  and Kyoto Encyclopedia of Genes and Genomes pathway analysis confirmed the dominance of the IL-17A s
66                                       N-of-1-pathways analysis confirmed differential upregulation of
67                              Personalized O2 pathway analysis could identify patients most likely to
68 orporation of signal flow and integration in pathway analysis could rank the pathways based on modula
69 n of biological pathways with our Integrated Pathway Analysis Database showed that these 26 peptides
70 uencing, quantitative RT-PCR, and subsequent pathway analysis demonstrated activation of inflammatory
71                                              Pathway analysis demonstrated association with Oxidative
72                                              Pathway analysis demonstrated that extracellular matrix,
73                       Focused bioinformatics pathway analysis demonstrated that IgE activation aligne
74 overall survival between these clusters, and pathway analysis demonstrates different oncogenic mechan
75                                              Pathway analysis did not reveal regulators of these 150
76   We performed transcriptional profiling and pathway analysis for each stimulus.
77                This includes the addition of pathway analysis for the identification of enriched biol
78                                   Functional pathway analysis found an enrichment of upregulated gene
79                               RNA sequencing pathway analysis from the prefrontal cortex (PFC) of mal
80                                The follow-up pathway analysis from tissue-specific genes for asthma s
81                    In addition, an ingenuity pathway analysis further implicates IFNgamma, IFNalpha,
82                                    In silico pathway analysis further indicated circadian regulation
83                                    Ingenuity pathway analysis further revealed that Nrf2-KO and Keap1
84                                   After KEGG pathway analysis, genes associated with 'cancer' pathway
85                                              Pathway analysis highlighted processes previously implic
86                                    Ingenuity pathway analysis identified "HSC Activation" as the high
87                                              Pathway analysis identified correlates of severity, incl
88                            Gene ontology and pathway analysis identified endoplasmic reticulum stress
89 oto Encyclopedia of Genes and Genomes (KEGG) pathway analysis identified gender-specific target genes
90                                              Pathway analysis identified gene networks regulating ste
91                                              Pathway analysis identified IFN-gamma and IL-1beta as th
92                                              Pathway analysis identified proliferative and mitochondr
93                                    Ingenuity Pathway Analysis identified signaling of inflammatory re
94                                    Ingenuity pathway analysis identified STAT3 and HGF as top regulat
95                                  Metagenomic pathway analysis identified steroid biosynthesis as the
96                                              Pathway analysis identified up-regulation of genes invol
97 to whole-transcriptome sequencing, ingenuity pathway analysis, immunofluorescence, and nerve elongati
98 matic analysis of DE proteins with Ingenuity Pathway Analysis implicate progenitor-dependent function
99                                              Pathway analysis implicated ascorbate and aldarate metab
100                                   Integrated pathway analysis implicated the involvement of extracell
101                                              Pathway analysis implicates immunity, lipid metabolism,
102                                              Pathway analysis implicates splicing in cellular PRMT5 d
103 olymph and bacteriocyte, alongside metabolic pathway analysis in host and symbiont, enable prediction
104             Alternatively, gene ontology and pathway analysis in tissues indicated increased protein
105                                              Pathway analysis indicated decreased signaling via TGF-b
106                                              Pathway analysis indicated that aberrantly methylated DE
107                                         This pathway analysis indicated that acyl-lipid pathways, inc
108                                              Pathway analysis indicated that arsenic exposure differe
109                                              Pathway analysis indicated that breaking up of prolonged
110                                              Pathway analysis indicated that ESR1 and IFN-alpha may b
111 messenger RNA expression, and cell-signaling pathway analysis indicated that transient aggressive ant
112                                    Ingenuity pathway analysis indicated topo IIbeta and immunophenoty
113                                    Ingenuity Pathways Analysis indicated that three genes belonging t
114                                    Ingenuity pathway analysis indicates GCN2 independently influences
115 predominantly expressed in brain tissue, and pathway analysis indicates the involvement of genes regu
116 marker pattern was run against the Ingenuity Pathway Analysis (IPA) database, containing annotated da
117                                    Ingenuity pathway analysis (IPA) determined 10 of the 13 e-miRNAs
118                                    Ingenuity Pathway Analysis (IPA) predicted that platelet-COX-1-ko
119 anscriptomics analysis followed by Ingenuity Pathway Analysis (IPA) revealed upregulation of angiogen
120                                    Ingenuity Pathway Analysis (IPA) showed that LINC00313 overexpress
121                         The QIAGEN Ingenuity Pathway Analysis (IPA) shows that high levels of ethanol
122                                    Ingenuity Pathway Analysis (IPA) was used to identify gene network
123  in proliferation predicted via Ingenuity(R) Pathway Analysis (IPA), characteristics associated with
124                              Using Ingenuity Pathway Analysis (IPA), we showed that these genes were
125 array (RPPA) and then subjected to Ingenuity Pathway Analysis (IPA).
126                                              Pathway analysis is suggestive of integrins transducing
127                                              Pathway analysis is widely used in omics studies.
128                                              Pathway analysis is widely used to gain mechanistic insi
129  germline variants in a broad gene spectrum, pathway analysis leads to top networks centering around
130                                      Genetic pathway analysis (MAGMA) was used to evaluate the relati
131 The function annotation of the DE genes from pathway analysis matches the clinical features.
132  the most comprehensive comparative study on pathway analysis methods available to date.
133      In this work, we propose a set of three pathway analysis methods based on the impact analysis, t
134 s to systematically and objectively evaluate pathway analysis methods by employing any number of data
135 te a reliable benchmark against which future pathway analysis methods could and should be tested.
136                                              Pathway analysis methods have a broad range of applicati
137 tance of this type of analysis, more than 70 pathway analysis methods have been proposed so far.
138 are the actual performance of 13 widely used pathway analysis methods in over 1085 analyses.
139             Comparison with state-of-the-art pathway analysis methods shows that BONITA has higher se
140           Further, our review concludes that pathway analysis methods that target specific pathway pr
141 atic analyses were performed using Ingenuity Pathway Analysis, miRDB, and Qlucore Omics Explorer.
142   These results were further complemented by pathway analysis (Molecular Mechanisms of Cancer, p53-,
143                                              Pathway analysis of AGO-PAR-CLIP-identified miR targets
144                                              Pathway analysis of binding sites for these three microR
145                                              Pathway analysis of cultured cytokine-producing human T
146                               Annotation and pathway analysis of DEGs between susceptible and resista
147                                              Pathway analysis of expressed genes identified no shared
148                                    Canonical pathway analysis of genes preferentially dysregulated in
149                                    Array and pathway analysis of IL-1beta-stimulated KCs revealed tha
150 ive workflow for both regular and integrated pathway analysis of multiple omics data.
151           Global transcriptome and Ingenuity Pathway Analysis of murine bone marrow-derived macrophag
152 entical for patients and pigs, but in-silico pathway analysis of proteins with >/=2-fold higher expre
153                                              Pathway analysis of published data of differentially exp
154                                              Pathway analysis of RNA expression identified a number o
155                                              Pathway analysis of RNA sequencing provided good evidenc
156                                 In addition, pathway analysis of RNA-seq data highlighted putative bi
157 -migration genes, as determined by ingenuity pathway analysis of RNA-Seq data.
158                                              Pathway analysis of the 17-gene signature revealed Jak-S
159                                              Pathway analysis of the gene expression profile and in v
160                                              Pathway analysis of the LCL transcriptome revealed, amon
161                      Gene set enrichment and pathway analysis of the microarray dataset showed enrich
162                                              Pathway analysis of the NMDE proteome revealed 44 additi
163  addition to basal and luminal clusters, and pathway analysis of the phosphoproteome identified a G-p
164 ic regulation for additional data mining and pathway analysis of the process of MSC chondrogenesis.
165                                              Pathway analysis of the proteomic data suggested that ou
166                                          The pathway analysis of the putative targets suggested that
167                                              Pathway analysis of the top 100 differentially expressed
168                                              Pathway analysis of the transcriptome indicated that cel
169                                              Pathway analysis of the transcriptomic profile of the in
170                                              Pathway analysis of these compounds revealed that juveni
171 as contributions from each of the genes, and pathway analysis of these contributions shows that the h
172                         Subsequent Ingenuity Pathway Analysis of these targets reveals implications f
173                                              Pathway analysis of transcriptomic data reveals that dow
174                                      Reverse pathway analysis of whole-transcriptome data from CDCexo
175                         The biofunctions and pathways analysis of DEGs revealed that cellular assembl
176          Proteomic data, RNA sequencing, and pathway analysis on predicted and validated targets of t
177             Before practically applying such pathway analysis (PA) methods, we must first evaluate th
178                                  The patient-pathway analysis (PPA) is designed to assess the alignme
179                                  The patient-pathway analysis (PPA) methodology detailed in this arti
180                                    A patient-pathway analysis (PPA) was completed to assess the align
181                                    A patient-pathway analysis (PPA) was conducted at the national lev
182                                    A patient pathway analysis (PPA) was conducted to assess the align
183                                    Ingenuity Pathway Analysis predicted that LPS and MPLA share simil
184                         Subsequent ingenuity pathway analysis predicted the miRNAs to regulate Th2 po
185 meta-analysis problem into a set of standard pathway analysis problems that have been solved efficien
186 of mapping, peak calling, motif finding, and pathway analysis results are also provided in CSA.
187 hat will facilitate visual interpretation of pathway analysis results.
188                                              Pathway analysis revealed "Glioma", "Signalling pathways
189                                         KEGG pathway analysis revealed a decreased abundance in ribos
190                                              Pathway analysis revealed a differentiation trajectory a
191 on changes induced by defeat, and biological pathway analysis revealed a dominant pattern of down-reg
192 encing between pre-PML and NTZ-ctr patients, pathway analysis revealed a high representation of genes
193                                              Pathway analysis revealed a significant overrepresentati
194                                              Pathway analysis revealed an association of phosphatidyl
195                                        DAVID pathway analysis revealed an enrichment of cellular path
196                                              Pathway analysis revealed an overall enrichment of genes
197                                              Pathway analysis revealed different biologic processes r
198                                              Pathway analysis revealed differential gene-expression c
199 n BCNR vs BCR and BCR vs BM respectively and pathway analysis revealed enrichment for genes involved
200                                              Pathway analysis revealed enrichment of calcium, Wnt and
201                                              Pathway analysis revealed enrichment of hit genes from t
202 markedly different between the 2 groups, and pathway analysis revealed frequently opposed responses b
203                                              Pathway analysis revealed further sub-significant FMREs
204                                              Pathway analysis revealed genetic evidence for differenc
205                                              Pathway analysis revealed mitochondrial oxidative phosph
206 CLIP miRNA targetome data sets combined with pathway analysis revealed multiple BHRF1-2 miRNA targets
207                                              Pathway analysis revealed nine significantly enriched ge
208 bal transcriptomic signatures, and Ingenuity Pathway Analysis revealed predicted dysfunction in epith
209                                   Untargeted pathway analysis revealed several metabolic processes wi
210                          Moreover, ingenuity pathway analysis revealed that an indirect interaction e
211                                     Enriched pathway analysis revealed that FZD3 inhibits transcripti
212                                Overall, KEGG pathway analysis revealed that GB feeding led to the enr
213                      Furthermore, integrated pathway analysis revealed that increased catabolism of f
214                                              Pathway analysis revealed that inflammatory mediators of
215                                    Ingenuity pathway analysis revealed that pembrolizumab-treated iTr
216                                              Pathway analysis revealed that the experimental regimen
217                                              Pathway analysis revealed that the SE-regulated genes we
218                                    Ingenuity Pathway Analysis revealed that the top 12 differentially
219                                              Pathway analysis revealed that these 3 gene groups were
220                     Interactome and Reactome pathway analysis revealed the interaction of DPSC/SCAP s
221                            PARADIGM inferred pathway analysis revealed the network connection of TP63
222                             Furthermore, the pathway analysis revealed the presence of 229 and 943 ge
223                                        Their pathway analysis revealed unexpected and widespread chan
224                                              Pathway analysis revealed up-regulated AA metabolism, ar
225                                              Pathway analysis revealed upregulation of various compon
226 oinflammatory cytokines, such as IL6 Further pathway analysis revealed widespread resting enrichment
227                    RNA-seq and comprehensive pathway analysis revealed, that genes related to a recen
228          To our knowledge, this is the first pathway analysis server that introduces and offers visua
229 tome has achieved a stable, high performance pathway analysis service, enabling the analysis of genom
230                                         KEGG pathway analysis showed 20 pathways were significantly e
231                                              Pathway analysis showed an increase in chemotaxis, migra
232                                              Pathway analysis showed enrichment of processes affected
233                                              Pathway analysis showed principally up-regulation of pat
234                                              Pathway analysis showed radiation-specific enrichment of
235                                    Ingenuity pathway analysis showed significant enrichment of 36 reg
236                                              Pathway analysis showed that age-dependent methylations
237                                              Pathway analysis showed that certain metabolomic and dis
238                                    Signaling pathway analysis showed that H3K9 acetylation changes ar
239                Transcriptomic expression and pathway analysis showed that several genes related in bl
240                                              Pathway analysis showed that the three phosphatidylcholi
241                                              Pathway analysis showed the highest positive z-score for
242                                              Pathway analysis showed the top canonical pathway in bot
243                                  Genome-wide pathway analysis showed total of 16 enriched hierarchica
244                                    Canonical pathway analysis showed upregulation of oxidative phosph
245                                         KEGG pathway analysis shows that the miRNAs that are differen
246                                    Ingenuity pathway analysis shows that urinary sodium and potassium
247 and pathway analyses of DEGs using Ingenuity Pathway Analysis software revealed significant associati
248 Multivariate statistical analysis, Ingenuity pathway analysis software, DIANALAB database and publish
249 ncing data were performed by using Ingenuity Pathway Analysis software.
250 (1.4-fold, FDR adjusted p0.05) and Ingenuity Pathway Analysis Software.
251                                       In the pathway analysis, sphingolipid metabolism was the most s
252    We utilized a comprehensive filtering and pathway analysis strategy comparing miRNA and microarray
253  canonical pathways, identified by Ingenuity Pathways Analysis, such as LXR/RXR, FXR/RXR activation (
254                                              Pathway analysis suggested differences in protein synthe
255                                     Further, pathway analysis suggested direct involvement of miRNA-2
256                                    Canonical pathway analysis suggested that Keap1-KO activated four
257                                   Integrated pathway analysis suggested that these genes were related
258                                              Pathway analysis suggested that this might in part be du
259                                            A pathway analysis suggests that cerebral immune and acute
260  (Ig) light chain and HSPA5/BIP Furthermore, pathway analysis suggests that enforced FAM46C expressio
261                                    Ingenuity pathway analysis suggests that several components of glu
262                                 Furthermore, pathway analysis suggests that Sfxn3 may be associated w
263                                              Pathway analysis suggests that the intervention results
264            Furthermore, the metabolomics and pathway analysis support the view that OAT1 plays a grea
265                                              Pathway analysis supports that Apatinib can be repurpose
266                              A complementary pathways analysis that emphasizes the cumulative aspects
267                                           In pathway analysis the differentially expressed genes in p
268 ase was intentionally built to allow disease pathway analysis through a systems approach in order to
269                  We then performed canonical pathway analysis to determine potential mechanistic sign
270                        Application of BONITA pathway analysis to previously validated RNA-sequencing
271 c strategy that combines genome editing with pathway analysis to probe the functions of individual PK
272  studies and improve mechanistic studies and pathway analysis to understand how diet diversity modula
273  < .05), hierarchical cluster algorithm, and pathway analysis, to identify candidate pathways for pro
274 nd Identification of Non-Coding Targets is a pathway analysis tool, implemented in Java that identifi
275    It is thus not clear if functional TF and pathway analysis tools established for bulk sequencing c
276                                              Pathway analysis using global miRNA and chromosomal copy
277               Secondly, predictive metabolic pathway analysis using the 16S rRNA gene data revealed t
278                                              Pathway analysis validation was performed using real-tim
279 and get all the functionality of a web based pathway analysis viewer.
280 ality, sex, and clinical site, and Ingenuity Pathway Analysis was applied.
281                                    A patient-pathway analysis was completed to assess the alignment b
282 d positions (DMPs) and regions (DMRs), and a pathway analysis was performed on the DMR annotated gene
283           Gene function was investigated and pathway analysis was performed through virus-induced gen
284                                    Canonical pathway analysis was performed.
285                                    Ingenuity Pathway analysis was performed.
286                              Gene expression pathway analysis was used to compare the functional netw
287                                    Ingenuity Pathway Analysis was used to determine the canonical pat
288    Finally, by integrating genomics data and pathway analysis, we find that the differential effects
289                                        Using pathway analysis, we identified 39 significant (FDR < 0.
290                                      Through pathway analysis, we identified enriched pathways shared
291                       Using single-gene SCNA pathway analysis, we observed that both cAMP and Fanconi
292                                        Using pathway analysis, we show that MHC-II(+) cell lines demo
293                           Applying ingenuity pathways analysis, we found that those cytokines interac
294 f gene expression and asthma phenotypes, and pathway analysis were performed in bronchial epithelial
295                    Gene ontology and network pathway analysis were performed using DAVID Bioinformati
296 ng, gene expression profiling, and Ingenuity Pathway Analysis were used to identify differentially ac
297 ing these challenges is gene set testing, or pathway analysis, which can mitigate sparsity and noise,
298 he results of the other kits at the level of pathway analysis while providing a combination of option
299                       In the overall ranking Pathway Analysis with Down-weighting of Overlapping Gene
300                                    Signaling pathway analysis with protein kinase inhibitors demonstr

 
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