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1 APN degradation due to a distorted scissile peptide bond.
2 ein-succinimide product and scission of that peptide bond.
3 e surrounding extein fragments with a native peptide bond.
4 rans isomerization of one particular proline peptide bond.
5 s capable of joining adjacent residues via a peptide bond.
6 some takes place following formation of each peptide bond.
7 lanking polypeptides (exteins) with a native peptide bond.
8 age of glycosidic bonds without breaking the peptide bond.
9 pecifically stimulate formation of the first peptide bond.
10 modified to join the N and C termini with a peptide bond.
11 face, induced by distortions of the backbone peptide bond.
12 ahel peptides, indicating exclusion from the peptide bond.
13 em-diol intermediate and (2) cleavage of the peptide bond.
14 nsion and its characteristic cis-Ile54-Pro55 peptide bond.
15 orbital (pi*) of C(i)=O(i) of the subsequent peptide bond.
16 udy a reaction similar to the formation of a peptide bond.
17 calcium ions triggers the formation of a cis peptide bond.
18 th N-methylacetamide chosen to represent the peptide bond.
19 sed strain on the already weak His207-Arg208 peptide bond.
20 disrupted by a flip of the Glu(192)-Gly(193) peptide bond.
21 ing is coordinated by an unusual cis-Ala-Ala peptide bond.
22 n a cis- or trans-configured Glu(18)-Pro(19) peptide bond.
23 located directly N-terminal to the scissile peptide bond.
24 should readily block the formation of every peptide bond.
25 the cis-trans isomerization of Xaa(1)-Pro(2) peptide bonds.
26 At the P-site, proline is slow in forming peptide bonds.
27 of conformational motion at or near specific peptide bonds.
28 gamma-glutamyl amide linkages and/or unusual peptide bonds.
29 s isomerization of the N13-P14 and P100-P101 peptide bonds.
30 iles and hydroxybenzotriazole, gives rise to peptide bonds.
31 sequence motif that can stabilize Pro-cisPro peptide bonds.
32 o peptide bonds of tripeptides into selenoxo peptide bonds.
33 for the stabilization of two high-energy cis peptide bonds.
34 city to hydrolyze thioester, isopeptide, and peptide bonds.
35 relation between the cis/trans states of the peptide bonds.
36 forms allows for the selective formation of peptide bonds.
37 g the conformation of specific pSer/pThr-Pro peptide bonds.
38 fering from sequence-defined polymers having peptide bonds.
39 the cis-trans isomerization of Xaa(1)-Pro(2) peptide bonds.
40 y of the liposomes promotes the formation of peptide bonds.
41 t ovalbumin aggregation rendered a number of peptide bonds accessible to digestive proteases which we
42 l change of the isomeric state of the prolyl peptide bond acts as a switching mechanism in altering t
44 thermally stable mutants, the L94(L)-S95(L) peptide bond adopts an energetically unfavorable non-X-p
45 4 with residues that strongly prefer a trans peptide bond (Ala, Gly) results in significant populatio
46 ring hydrogen-deuterium exchange patterns of peptide bond amide protons monitored by mass spectrometr
47 1,2,3]triazolyl moiety is isosteric with the peptide bond and can function as a surrogate of the clas
48 hich the disulfide A11-B10 was replaced by a peptide bond and found that cAMP production ceased while
49 a trans-restricted geometry of the preceding peptide bond and induce well-defined secondary structure
50 PXTG-containing proteins at the scissile T-G peptide bond and ligates protein-LPXT to the terminal Gl
51 ols the orientation of the Glu(192)-Gly(193) peptide bond and the correct architecture of the oxyanio
52 age occurs most efficiently at the LN1036-37 peptide bond and to a lesser extent at three other sites
53 that may involve mechanically stressing the peptide bond, and could be selectively targeted by inhib
54 arboxylate metal ligand, a resulting twisted peptide bond, and the off-line geometry for dioxygen coo
55 mutations, cleaves human IL-23 at the target peptide bond, and when pre-mixed with IL-23 in primary c
56 sight into the formation of modern ribosomal peptide bonds, and a means for the emergence of peptides
57 iazole is a well-recognized bio-isostere for peptide bonds, and peptides with one or more triazole un
58 the hydrogen-bonding network around the cis-peptide bond are well conserved within the metallopeptid
59 the site of this cleavage, determining which peptide bonds are cleaved, (ii) the mechanism by which g
60 yze the isomerization of the phospho-Thr-Pro peptide bond at the turn motif, thus converting these PK
63 in LSF permits isomerization by Pin1 of the peptide bonds at the nearby phosphorylated SP motifs (Se
64 mechanism by which the cleavage of multiple peptide bonds awaits the "almost complete" delivery of a
65 ave been interested in the N-alkylation of a peptide bond because such a modification alters the conf
66 talyses the formation of an irreversible iso-peptide bond between lysine 50 and glutamic acid 270 on
67 ss spectrometry showed that IpaJ cleaved the peptide bond between N-myristoylated glycine-2 and aspar
69 nd other enzymes that selectively cleave the peptide bond between the proline and the phenylalanine a
73 ative method was developed to form amide and peptide bonds between amines and primary nitroalkanes si
74 hat catalyzes the cis/trans isomerization of peptide bonds between proline and phosphorylated serine/
76 2,3-triazole moiety can be incorporated as a peptide bond bioisostere to provide protease resistance
78 teolytic events: cleavage of the Leu81-Glu82 peptide bond by chymotrypsin C (CTRC) and cleavage of th
81 st peptides by proteolytic cleavage at Arg-X peptide bonds by arginine gingipains, followed by citrul
82 However, despite the hydrolysis of protein peptide bonds by peptidases being a process essential to
83 trifluoromethyl group, we show that the cis peptide bond can be readily switched from 0% to 100% in
84 ied: amino acid side chains can be modified, peptide bonds can be cleaved or isomerized, and disulfid
85 c VWF and FRETS-VWF73 at the V(1607)-T(1608) peptide bond; cathepsin G and matrix metalloprotease 9 c
86 t efficiently catalyzed citrulline-dependent peptide bond cleavage (kcat/KM = 6.9 x 10(5) M(-1)s(-1))
87 D) of the zn* fragments resulted in specific peptide bond cleavage adjacent to the binding site of 1,
88 d that provide insight into the chemistry of peptide bond cleavage and establish the role of Thr1 Oga
89 triads of fragmentation ions resulting from peptide bond cleavage and further neutral loss of either
90 rization of the ATP- versus AMPPNP-dependent peptide bond cleavage and the delivery of the scissile s
94 h residue 1 being predominantly l-isoAsp and peptide bond cleavage next to Ser 8 is also evident.
96 ked to differences in enzyme selectivity for peptide bond cleavage of camel and bovine milk proteins
98 l residues of oxidized trunc-TtRp have trans peptide bond configurations but that two of these peptid
99 ctra and the same pattern of peptidyl-prolyl peptide bond configurations by NMR, and both appear to b
102 nique ability to populate both cis and trans peptide bond conformations may allow proline to act as a
104 leavage site in VWF, the Tyr(1605)-Met(1606) peptide bond, contains both oxidation-prone residues.
105 new ends through the cleavage of an existing peptide bond, CP can perturb local tertiary structure an
106 de bond configurations but that two of these peptide bonds (Cys151-Pro152 and Gly169-Pro170 located n
107 e energy barrier to the formation of the cis peptide bond decreases from 21.4 kcal/mol in the absence
108 tions: peptidyl transfer, the formation of a peptide bond during protein synthesis, and peptidyl hydr
111 idues of the FMN-binding pocket that display peptide-bond flipping upon NAD(+) binding in proper NADH
113 and the nascent peptide cooperate to inhibit peptide bond formation and induce translation arrest.
114 plex molecular machine, but the mechanism of peptide bond formation and the origin of the catalytic p
116 explain how the rates of GTP hydrolysis and peptide bond formation are controlled by the mRNA codon
118 ng during translation correlates with slowed peptide bond formation at successive proline sequence po
119 report unambiguous spectroscopic evidence of peptide bond formation at the air-water interface, yield
121 s of faithfully decoding mRNA and catalyzing peptide bond formation at the peptidyl transferase cente
122 a specific requirement for eIF5A to promote peptide bond formation between consecutive Pro residues.
123 lide action involves selective inhibition of peptide bond formation between specific combinations of
124 model mRNAs was found to reduce the rate of peptide bond formation by three orders of magnitude in a
125 ghter-binding aa-tRNAs show reduced rates of peptide bond formation due to slow release from EF-Tu*GD
126 ondensation domain, which typically performs peptide bond formation during product assembly, also syn
130 that similar mechanisms are involved in the peptide bond formation in aqueous solution and in the ri
131 ructures have shown that the active site for peptide bond formation is composed entirely of RNA.
132 osome during proofreading, particularly when peptide bond formation is slow, which may serve to incre
133 fication of 23S rRNA in regions critical for peptide bond formation now enables the direct ribosomal
135 required for irreversible GTP hydrolysis and peptide bond formation plays a key role in the fidelity
137 nti-IgG antibodies were then coupled through peptide bond formation to acidic functional groups on th
138 abrogate the ability of the PTC to catalyze peptide bond formation with a particular subset of amino
140 as dictated by the mRNA codon, catalysis of peptide bond formation, and movement of the tRNAs and mR
142 ingly, the key chemical step of translation, peptide bond formation, is among the slower enzymatic re
143 chemical step of natural protein synthesis, peptide bond formation, is catalysed by the large subuni
144 e study of their role(s) in the mechanism of peptide bond formation, it is remarkable that the purpos
145 mical reactivity hypothesis and arguing that peptide bond formation, not accommodation, is rate limit
146 ssesses all of the capabilities required for peptide bond formation, seems to be still functioning in
165 gation factor P (EF-P), which by stimulating peptide-bond formation allows translation to resume.
166 showed no defects in mRNA and tRNA binding, peptide-bond formation and sparsomycin-dependent translo
167 these conditions, rates and/or endpoints of peptide-bond formation for the cognate (8-oxoG*C) and ne
169 effectors of messenger RNA (mRNA) decoding, peptide-bond formation, and ribosome dynamics during tra
170 ng fundamental insight into the mechanism of peptide-bond formation, our findings suggest how the seq
171 cid proline is a poor donor and acceptor for peptide-bond formation, such that translational stalling
172 he elimination of a water molecule for every peptide bond formed, and are thus unfavorable in aqueous
173 cts the carrier domain cofactor bound to the peptide bond-forming condensation domain, whereas a seco
174 hus represents a new group of tRNA-dependent peptide bond-forming enzymes in secondary metabolite bio
177 highly strained conformation at the scissile peptide bond, had been identified and was hypothesized t
178 f peptide fragments using a dynamic covalent peptide bond has not yet been achieved without enzymatic
179 Many high-yielding reactions for forming peptide bonds have been developed but these are complex,
184 , quantifying the extent of racemization and peptide bond hydrolysis using reverse-phase high-perform
185 alternating between epoxide ring opening and peptide bond hydrolysis, assisted by E271 and E296, resp
190 glycan modifications, yet always cleaved the peptide bond immediately preceding the glycosylated resi
191 glutamate binding causes an aspartate-serine peptide bond in a flexible part of lobe 2 to rotate 180
192 bonyl oxygen on the N-terminal of the prolyl peptide bond in a predominately unidirectional fashion.
193 on reaction of serpins, a protease cleaves a peptide bond in a solvent-exposed reactive center loop (
198 use Ctrc readily cleaved the Phe-150-Gly-151 peptide bond in the autolysis loop of T8 and T9 and inhi
200 active site of Ssu72, with the pSer 5-Pro 6 peptide bond in the cis configuration, which contrasts w
201 trate the lack of recognition of the central peptide bond in the dipeptide, potentially enabling the
202 roteolytic cleavage of the Arg(494)-Val(495) peptide bond in the zymogen-like pro-HGF results in allo
204 prolyl isomerization of the Asp(29)-Pro(30) peptide bond in wild-type AHSP because it was absent whe
207 ng the backbone connectivity by breaking all peptide bonds in lysozyme, we find that the hysteresis s
211 fusion protein substrates position alternate peptide bonds in register with the antibody catalytic su
213 avage of two disulfide bonds and up to three peptide bonds in the kringle 5 domain of the protein.
214 conformations for both the first and second peptide bonds in the monomers, and a two-dimensional che
218 line-I helix (PPI, having all cis-configured peptide bonds) into polyproline-II (PPII, all trans) hel
220 osecond timescale but does not reproduce the peptide bond inversion between loop residues Tyr269 and
221 ith the substrate, and creation of a twisted peptide bond involving this carboxylate and the followin
222 icing pathway in which the upstream scissile peptide bond is consecutively rearranged into two thioes
223 and transfer RNA on the ribosome after each peptide bond is formed, a process termed translocation.
224 As and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosom
225 of H3 at the alanine 15-proline 16 (A15-P16) peptide bond is influenced by lysine 14 (K14) and contro
227 he error rate and the energy expenditure per peptide bond is proven to be independent of the stabilit
230 s, so the cis/trans isomerization of proline peptide bonds is the rate-limiting step during triple-he
231 lyethylene glycol (PEG) extension as well as peptide bond isosteres resist KLKB1 cleavage but that on
232 ragmentation to the NOTCH3 N terminus at the peptide bond joining Asp(80) and Pro(81) Cleavage at thi
234 in, we report applying a propargyl group for peptide bond modification at diverse junctions, which ca
237 ed cells, indicating that the NH(2)-terminal peptide bond of Asp(452) is essential for the initiation
238 Here we demonstrate that the Leu81-Glu82 peptide bond of human cationic trypsin, but not trypsino
239 ced binding requires the N-end residue and a peptide bond of the substrate, as well as multiple aspec
240 nesis, including backbone mutagenesis of the peptide bond of the vicinal disulfide, we have establish
241 rsed in the solution containing trypsin, the peptide bonds of BSA were hydrolyzed and peptide fragmen
245 enation is demonstrated by conversion of two peptide bonds of tripeptides into selenoxo peptide bonds
246 hat Fv-cmp is an endoprotease that cleaves a peptide bond on the C-terminal side of the lectin domain
248 ontaining triazole and the other with native peptide bonds, on a gold substrate was studied by quartz
249 is accomplished through the formation of two peptide bonds, one between an amine-terminated PEG and t
250 thiol group toward the carbonyl carbon of a peptide bond or an electrophilic group of an inhibitor.
251 e lone pairs (n) of the oxygen (O(i-1)) of a peptide bond over the antibonding orbital (pi*) of C(i)=
252 hat catalyzes cis-trans isomerization of the peptide bond preceding a proline and promotes folding an
253 cis) template possesses a characteristic cis peptide bond preceding Ala(5), which results in type VI
254 hat stabilizes the trans conformation of the peptide bond preceding hyp, endowing hyp with the unusua
255 ivity was highly specific and hydrolysed the peptide bond predominantly on the carboxy side of Glu re
258 inus reveals a less stable His207-Arg208 cis peptide bond, providing a rationalization for its sponta
260 65%, while replacing disulfide A10-A15 by a peptide bond reduced binding affinity to 32% and lowered
261 ntrast, replacing the disulfide A24-B22 by a peptide bond reduced potency proportional to the binding
262 lerates cleavage of hPg at the R(561)-V(562) peptide bond, resulting in the disulfide-linked two-chai
263 In betaPGM, isomerisation of the K145-P146 peptide bond results in the population of two conformers
266 ls cleave FRETS-VWF73 at the V(1607)-T(1608) peptide bond, suggesting that elastase or PR3 expressed
267 NAs embracing two amino acids with a linking peptide bond supports the idea that a direct-RNA-templat
268 lar ribonucleoprotein complexes that perform peptide bond synthesis and phosphodiester bond cleavage,
270 air-water interface as a favorable venue for peptide bond synthesis, and demonstrate the occurrence o
271 e site of 23S rRNA ribozyme, which catalyzes peptide bond synthesis, was both necessary and sufficien
272 ore, these mutant enzymes hydrolyze the same peptide bond that is recognized by the corresponding ful
273 It would be of interest to know whether peptide bonds that involve the nitrogen atoms of cystein
275 ed target sequence was evident, although the peptide bonds that were susceptible to proteolysis were
276 n indeed lead to proteolysis of the adjacent peptide bond, thereby providing substantive support for
277 the calcium ions not only stabilize the cis peptide bond thermodynamically but also catalyze its for
278 II activation peptide segment at the R37-G38 peptide bond, thrombin assists in activating the transgl
279 from the FAD cofactor acting to polarize the peptide bond through interaction with the carbonyl oxyge
280 he initial event in protein self-splicing, a peptide bond to the nitrogen atom of an internal cystein
282 serine are more susceptible to cleavage than peptide bonds to amino acids that lack reactive side cha
283 been thought to drive the prolyl-containing peptide bonds to the trans configuration needed for trip
284 ssuming fixed bond lengths, bond angles, and peptide bond torsions, as well as ignoring molecular int
286 rgy simulations of the formation of this cis peptide bond using a combined quantum mechanics/molecula
287 The cis conformation at the Cys(6)-Pro(7) peptide bond was essential for alpha3beta4 nAChR subtype
288 trans conformations about the central prolyl peptide bond was investigated by integration of signals
289 The thermodynamic stability of the scissile peptide bond was not dependent on CTRC or Leu-81, as re-
290 sin was incubated with CTRC, the Leu81-Glu82 peptide bond was re-synthesized to establish the same eq
291 fferent cis/trans geometry at the key prolyl peptide bonds were designed, covering a promising confor
295 FT-IR spectra confirmed the formation of new peptide bonds, which significantly improved stability of
296 rs, from building blocks linked by olefin or peptide bonds, with a sequence defined by a reconfigurab
298 -1 exhibits a unique specificity for Pro-Pro peptide bonds within the consensus sequence VNP PVP.
299 es RNA polymerase II (pol II) by isomerizing peptide bonds within the pol II carboxy-terminal domain
300 ptide core, can stabilise the highly dynamic peptide bonds, without losing the vital solubility of th