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1 hromatin status spanning multiple genes were phased.
2 tified an extended gyrase binding motif with phased 10-bp G/C content variation, indicating that bend
3 orest had the highest accuracy and correctly phased 86% of the deletions with allele-specific read ev
4 % of the known genome (NG50) up to 25 Mb and phased ~99.5% of heterozygous sites at 98-99% accuracy,
5 ed for DNA molecules containing two pairs of phased A-tracts that are out of phase with each other, s
6 progressively with the increasing number of phased A-tracts, as expected for DNA molecules with incr
7 to T cell priming if provided appropriately phased activatory stimuli, an observation that could be
9 regional cell groups exhibit differentially phased activity, creating stereotypical spatiotemporal c
12 ac target genes overlap, only 13% of morning-phased and 22% of evening-phased genes had both H3K4me3
15 he EE motif, a significant subset is morning phased and enriched for previously unrecognized motifs a
21 e electronic monitoring was implemented by a phased approach between December 2005 and July 2007.
22 s to support this principle: (1) implement a phased approach to a 'new normal'; (2) balance individua
23 nd within hospitals, ranging from preplanned/phased approaches to the checklist simply "appearing" in
24 ater emulsion system which simulated a multi-phased aqueous food system containing oil and beta-gluca
25 f a large-scale two-dimensional nanophotonic phased array (NPA), in which 64 x 64 (4,096) optical nan
26 imize the phases used to drive an ultrasonic phased array and show that acoustic levitation can be em
28 radient metasurface structures consisting of phased array antennas are able to circumvent the phase-m
31 ynamic phase modulation, the proposed linear phased array is no longer bound by the acoustic reciproc
32 the Advanced Land Observation System (ALOS) Phased Array L-band Synthetic Aperture Radar (PALSAR) mo
34 experimentally at a depth of 60 mm, using a phased array transducer with a center frequency of 3 MHz
35 presents a controllable space-time acoustic phased array which breaks time-reversal symmetry, and en
36 ects are broadly similar to those found in a phased array-an engineering design widely found in human
41 ast material-enhanced imaging, with a pelvic phased-array coil before radical prostatectomy were incl
42 phased-array head coil and a twelve-channel phased-array coil for the whole body, consisting of an e
43 eighty-five patients with PC underwent 3.0-T phased-array coil prostate magnetic resonance (MR) imagi
47 equipped with three coils: an eight-channel, phased-array head coil and a twelve-channel phased-array
48 6-mm isotropic voxels, achieved by implanted phased-array receive coils) consistently show three sect
50 example, we demonstrate two second harmonic phased-array sources that perform two optical functions
51 independently, thereby creating passive self-phased arrays allowing for tunable redirection and wave
52 ltrasonic demodulation, multiunit coherence, phased arrays and acoustic lenses, can be used to manipu
53 HAT system implemented using two 256-emitter phased arrays and manipulate individually up to 25 milli
54 sibilities for half-wavelength-pitch optical-phased arrays and ultra-dense space-division multiplexin
57 and therefore extends the functionalities of phased arrays beyond conventional beam focusing and stee
58 y the principle of reciprocity, conventional phased arrays exhibit identical transmission and recepti
60 -scale radiofrequency phased arrays, optical phased arrays have a unique advantage in that the much s
62 ctively, providing the opportunity to create phased arrays made of nanoantennas represented by the ho
63 ctric on-chip polarization rotators based on phased arrays of Mie resonators with negligible insertio
64 radient metasurface structures consisting of phased arrays of plasmonic or dielectric nanoantennas ca
65 d nonlinear heterostructure will enable such phased arrays to span most of the infrared spectrum.
66 This phenomenon constitutes the basis of phased arrays, commonly used at microwave and radio freq
67 bersome to deploy large-scale radiofrequency phased arrays, optical phased arrays have a unique advan
71 monstrate the importance of chromosome-scale phased assemblies for the discovery of structural varian
72 anopore Technologies and Pacific Biosciences phased assemblies identified 154 regions that are prefer
76 e Cabernet Sauvignon genome sequence and the phased assembly of nine wild and cultivated grape genome
78 at nucleosomes remain strongly organized and phased at many facultative distal regulatory elements, e
79 on rules of a femtosecond infrared helically phased beam into its high-order harmonics, showing that
80 s a good model for protein-free rotationally phased bent DNA of the same curvature as in a nucleosome
81 suggesting that highly conserved temporally phased biotic interactions are ubiquitous among plankton
82 ese linked-reads also generate megabase-long phased blocks and provide a cost-effective tool for dete
85 Illumina short-read data with long reads, we phased both single-nucleotide variants and SVs, generati
87 Also, eight of eight top ranked deletions phased by only HiC were validated using long range polym
89 d in England for adults aged 70 years with a phased catch-up programme for those aged 71-79 years.
90 ion as a risk-mitigation strategy before the phased cessation of OPV (starting with Sabin type 2) and
91 onstrate that pre-iPSCs have a more open and phased chromatin architecture than that of MEFs and iPSC
92 chimeric Chd1-Ume6 or endogenous Isw2 shifts phased chromatin arrays in cooperation with endogenous c
94 t phenotypes and connections between evening-phased circadian clock components and CBF3 transcription
95 s a delay and reduction in levels of evening-phased clock gene transcripts and significant lengthenin
96 atory mechanism is the repression of evening-phased clock genes via the binding of morning-phased Myb
99 ying this strategy, we produced a completely phased de novo genome assembly for each haplotype of an
102 and a single-wavelength anomalous dispersion phased density map made from these sites aligned with th
104 of Assembly 22, the first chromosome-level, phased diploid assembly of the C. albicans genome, coupl
106 Future use of the hydrofluorocarbons will be phased down and, thus replacement fluids must be found.
107 A(3) were analyzed using an experimental MAD-phased electron density map that was calibrated to an ab
111 rved mechanisms that can produce distant but phased features on transcript and proteome isoforms.
114 nly 13% of morning-phased and 22% of evening-phased genes had both H3K4me3 and H3K9ac peaks, suggesti
115 otifs enriched in the promoters of similarly phased genes, some potentially associated with transcrip
116 increased the availability of genomic data, phased genome assembly and structural variant (SV) analy
118 healthy PRDM9-knockout mother and performed phased genome sequencing on her, her child, and control
119 se diverse data types with each individuals' phased genome, we identified widespread tissue-specific
121 18 121 autosomal genes in 1092 statistically phased genomes from the 1000 Genomes Project and 184 exp
123 nctional genomic data obtained from multiple phased genomes in a graphical interface with access to m
125 olution in the recent past, and they require phased genomes, which contain switch errors that can cat
126 ACE ('Assessing Changes to Exons') converts phased genotype calls to a collection of explicit haplot
127 stances of cis-acting co-regulation by using phased genotype data and discovered 233 SNPs as the most
135 pdate, and (ii) it is much faster to match a phased GWAS haplotype to one reference haplotype than to
136 ficantly improves the switch accuracy within phased haplotype blocks as compared to existing haplotyp
137 me sequencing, the basic goal of producing a phased (haplotype-resolved) genome sequence with end-to-
138 loidy), regions with loss of heterozygosity, phased haplotypes extending to entire chromosome arms, r
140 first whole-genome catalogue of variants and phased haplotypes in people of Amish and Mennonite ances
141 ons), loss of heterozygosity, megabase-scale phased haplotypes often spanning entire chromosome arms,
142 input data from real or previously simulated phased haplotypes, allowing it to mimic very closely the
147 haplotypes, allowing us to generate a fully phased human epigenome, consisting of chromosome-level a
149 based on the analysis of SNPs and indels in phased human genomes, we observe that replication asynch
150 We have developed this principle into a two-phased immunogen evaluation pipeline to rank-order vacci
152 sis of participants in a cluster-randomized, phased-implementation trial of isoniazid preventive ther
153 pes sampled from 32 sire/dam/offspring trios phased in a previous study) led to an overall increase i
154 igh-resolution haplotypes (78.6% of variants phased in a single block) with high pairwise phasing acc
155 hich, according to segregation analyses, are phased in a single copy of each of the affected chromoso
156 Even with maximally feasible reductions phased in from 2015 to 2035, global mean temperatures in
158 s of both the permittivity and permeability, phased in space and time in the form of traveling waves,
159 algorithm to take advantage of the partially phased information contained in long genomic fragments a
161 re developments occur while RAD-AID delivers phased introduction, testing, and scaling of AI via glob
162 ften expose inadequacies in the conventional phased investigational therapeutic development paradigm.
164 Further analysis revealed that the morning phased LNK1 and LNK2 genes control circadian rhythms, ph
165 ectrical stimulation of mouse colon produced phased-locked calcium signals in myenteric neurons and p
166 ication in an allele-specific, chromosomally phased manner, we determined for the first time the repl
168 orted a small-RNA species of phased and half-phased miRNA-like RNAs different from canonical miRNAs f
169 The target genes of those phased and half-phased miRNA-like RNAs function in process of cell growt
170 significant diel periodicity consistent with phased modulations of division observed in culture.
171 hased clock genes via the binding of morning-phased Myb-like repressors to evening element (EE) promo
172 binding site and locally organizes large and phased nucleosomal arrays, not only in interphase steady
173 odifications and the presence of either well-phased nucleosomes or nucleosome-depleted regions, respe
174 hypersensitivity and are flanked by strongly phased nucleosomes, consistent with known TF binding sit
176 al cost because (i) the GWAS samples must be phased only once, whereas standard methods would implici
177 t-read DNA sequencing data and statistically phased onto haplotype blocks in 26 human populations.
179 sed 1.5% or less space to flexibly represent phased or unphased genotypes with multiple alleles and a
180 oliferation, the use of HEU targets is being phased out and alternative strategies for production of
181 g-chain PFAAs, as these substances are being phased out and replaced by a wide variety of PFASs with
182 w that if carbon-intensive infrastructure is phased out at the end of its design lifetime from the en
183 ing compound, methyl bromide (MeBr) is being phased out despite being considered to be the most effec
184 nducted a field study after chlorpyrifos was phased out for indoor use in the United States in 2001 t
186 lling plant pests, methyl bromide (MeBr) was phased out in 2005 in the USA, because it can deplete th
192 d hydrochlorofluorocarbons have already been phased out under the Montreal Protocol due to concerns a
194 including non-selective fumigants have been phased out, particularly due to ecotoxicological concern
199 DE and OctaBDE were banned in California and phased-out of US production; resulting impacts on human
200 and polyfluoroalkyl substances (PFASs) were phased-out of use due to concerns raised by their persis
201 rounding population density, suggesting that phased-out PBDEs continued to be emitted from population
202 s) are becoming popular replacements for the phased-out polybrominated diphenyl ether (PBDE) mixtures
203 remaster((R)) 550 (FM 550), and the recently phased-out polybrominated diphenyl ethers (PBDEs), all o
208 the number of germline variants that can be phased over standard read-backed methods in paired tumor
209 onal origin of those haplotypes by employing phased parental genotypes and deciphering WGA-distorted
210 rosophila, footprints mapping to codons in a phased pattern, the hallmark of productive translation.
212 he abundance of pre-existing piRNAs, and the phased piRNA pathway, which generates strings of tail-to
216 e ping-pong cycle localize to nuage, whereas phased piRNA production requires Zucchini, an endonuclea
217 3 slicing is required to efficiently trigger phased piRNA production, an alternative, slicing-indepen
219 plotype transmission information to create a phased "Platinum" variant catalog of 4.7 million single-
220 s, otherwise called diplotypes, which denote phased polymorphisms and structural variations (SVs) tha
222 e abundance of piRNAs, whereas production of phased primary piRNAs from cleaved transposon RNAs adds
223 quent ~26 nt become the first in a series of phased primary piRNAs that bind Piwi, allowing piRNAs to
224 found that membrane expression of correctly phased R16/17 was sufficient to recruit nNOS to the sarc
225 ized clinical trial comparing multielectrode-phased radiofrequency ablation (MEA) to standard focal i
226 diofrequency system (Biosense-Webster) and a phased radiofrequency multielectrode system (pulmonary v
229 APMIX at inferring ancestry when preexisting phased reference data are unavailable and genomes are se
230 hods require high-coverage genotype data and phased reference panels, and are therefore inappropriate
233 tion and Endgame Strategic plan outlines the phased removal of oral polio vaccines (OPVs), starting w
234 -endothelial molecular pathway governing the phased response of angiogenesis and lymphangiogenesis fo
235 n African samples, which was based on a trio-phased scaffold, increases downstream imputation accurac
237 response factor; (2) reduced accumulation of phased secondary small interfering RNAs from two genomic
239 ne such family specific to plants is that of phased, secondary siRNAs (phasiRNAs); these require RDR6
240 g in many monocots to generate diverse 24-nt phased, secondary small interfering RNAs (phasiRNAs), wh
241 these pathways converge in the production of phased, secondary, small interfering RNAs (phasiRNAs), o
244 ut also increase the probability of covering phased single-nucleotide polymorphisms (SNPs), which all
245 switch error rates (0.17%), providing fully phased single-nucleotide variants, indels and structural
246 for other small RNAs (sRNAs), such as 21-nt phased siRNAs (phasiRNAs) and natural antisense siRNAs (
248 n also resulted in increased accumulation of phased siRNAs (phasiRNAs) that are predominantly generat
249 fying over 500 loci generating 21-nucleotide phased siRNAs (phasiRNAs; from PHAS loci), of which 483
250 nthers plus mature pollen we find that 21-nt phased siRNAs from 463 loci appear abruptly after germin
251 haplotype, align them to the reference, call phased small and structural variants, and define a small
252 evolved similar tasiRNA pathways to initiate phased small interfering RNA (phasiRNA) production from
253 -localization of miR2275 and a 24-nucleotide phased small interfering RNA in maize anther tapetal and
254 ca and shed light on the evolution of miRNAs/phased small interfering RNA networks that regulate larg
255 e new cluster is 22 nucleotides and triggers phased small interfering RNA production from six FBX gen
256 ic (21-nucleotides [nt]) and meiotic (24-nt) phased small interfering RNAs (phasiRNAs) and their patt
259 viewer and a query page for the analysis of phased small RNAs; these are particularly useful for und
264 ant signal processing method, referred to as phased spectrum deconvolution method (PhiSDM), designed
265 need further investigation, and we propose a phased stepwise research framework to ensure proper eval
267 on and PCR stage enables the construction of phased synthetic reads from each of the nearly 10,000 'v
269 To reconstruct their polyploid origin, we phased the genomes of two ale strains and found ale hapl
274 pression must be circadian and appropriately phased to support rhythms, and AVP receptor signaling is
275 "staggered sweep." It is named for its three-phased trajectory: (i) Initially, the two linked mutatio
276 guided slicing is required for biogenesis of phased, trans-acting siRNAs (tasiRNAs), whose cleaved pr
277 resident and recruited immune cells, and the phased transition from destructive to reparative inflamm
278 s from a single individual can be accurately phased using a combination of shotgun and proximity liga
280 of structures solved at X-ray FELs have been phased using external information via molecular replacem
283 considerations for universal, risk-based, or phased vaccination strategies in different settings.
287 tegrated binding data with transcriptome and phased WGS data to investigate allelic DAP interactions
290 ord, the delta(18)O residue is strongly anti-phased with Antarctic temperature variability on sub-orb
293 osome in which the DNA has been rotationally phased with respect to the histone octamer by TG motifs.
295 t, randomised trial to examine the effect of phased withdrawal of heart failure medications in patien
296 dgame Strategic Plan 2013-2018 calls for the phased withdrawal of OPV, beginning with the globally sy
298 dgame of polio eradication which calls for a phased withdrawal of oral polio vaccine beginning with t
301 el ptychographic experiment using a randomly phased X-ray probe to considerably reduce the dynamic ra