ライフサイエンスコーパス: phyla

1 Ecdysoza (arthropods, nematodes and related phyla).

2 onse regulator for BphP in diverse bacterial phyla.

3 microbial candidate genera from 11 different phyla.

4 nging to the Spirochaetes and Actinobacteria phyla.

5 des belong to one of the most diverse animal phyla.

6 lineages, which is common in many prokaryote phyla.

7 he metabolism of C(i) throughout prokaryotic phyla.

8 ccurs right after birth by several bacterial phyla.

9 d at sink locations varied between microbial phyla.

10 a, eight Protozoa, two Plantae, and 17 Fungi phyla.

11 /crh-1 are defective in LTM formation across phyla.

12 found in fifteen bacterial and two archaeal phyla.

13 s and ctenophores - and the remaining animal phyla.

14 ermine the abundances of the major bacterial phyla.

15 two species of larvae belonging to different phyla.

16 development shared across distantly related phyla.

17 entity) from 47 bacterial and three archaeal phyla.

18 wn to be widespread across diverse bacterial phyla.

19 aries considerably among different bacterial phyla.

20 eptides that have been identified in several phyla.

21 conflict pathways found in diverse bacterial phyla.

22 yla compared to other bacterial and archaeal phyla.

23 ved and essential for enzyme activity across phyla.

24 rt-chain collagens, of non-bilaterian animal phyla.

25 for inhibitors of PSD enzymes across diverse phyla.

26 bacterial genomes, spanning the majority of phyla.

27 r diversity across entire fungal classes and phyla.

28 e used to define phylotypic periods in other phyla.

29 terns and processes underlying the origin of phyla.

30 ioses with marine invertebrates of different phyla.

31 o 29 genera of 19 families in 9 classes of 5 phyla.

32 to consider them representatives of extinct phyla.

33 vertically, as in the majority of bacterial phyla.

34 ve from closely related strains to divergent phyla.

35 ally and environmentally important microbial phyla.

36 elonging to the Firmicutes and Bacteroidetes phyla.

37 ding 110 species across 40 families and nine phyla.

38 ly diverse and are found across 23 different phyla.

39 unctionally validated in different bacterial phyla.

40 t constituted 98.18% (+/- 0.22) of the whole phyla.

41 ts as providing biological justification for phyla.

42 arding orthologous genes and pathways across phyla.

43 t cell biological contexts across eukaryotic phyla.

44 cteria coming together irrespective of their phyla.

45 network patterns, are shared across several phyla.

46 riod--is conserved among species within some phyla.

47 iated class of RNAs expressed across diverse phyla.

48 Operational Taxonomic Units belonging to six phyla.

49 for motion detection that are shared across phyla.

50 obiomes of two host organisms from different phyla.

51 gut microbiota isolates from three distinct phyla.

52 tionarily conserved among species of various phyla.

53 ll adhesion and migration in many eukaryotic phyla.

54 teobacteria, Planctomycetes, and Chloroflexi phyla.

55 that can inform social communication across phyla.

56 nd the recently described Kiritimatiellaeota phyla.

57 vel operational taxonomic units spanning 135 phyla.

58 virus evolutionary tree, with no additional phyla.

59 hetic gene clusters across diverse bacterial phyla.

60 fungi from the Ascomycete and Basidiomycete phyla.

61 diversified independently across protostome phyla.

62 phenomenon expressed by many species across phyla.

63 or emigration into diverse organs in distant phyla.

64 he ecdysozoans, with nematodes and six other phyla.

65 ted with 21 different archaeal and bacterial phyla.

66 ptors are present in bacteria from different phyla.

67 tionarily conserved across distantly related phyla.

68 biomass was dominated by DNA from eukaryotic phyla.

69 , growth, and reproduction in various animal phyla [1].

70 e highest sequence similarity with candidate phyla (10,11) .

71 ruses, and included a total of six bacterial phyla, 17 bacterial genera, 23 bacterial species, and tw

72 Overall, 27 phyla, 171 families and 533 genera were detected, and di

73 e calculated for the relative abundance of 3 phyla, 2 alpha diversity metrics, and 4 beta diversity m

74 ar a closer relationship with some spiralian phyla [3, 4].

75 s with members of the crown groups of extant phyla [4] and a lack of clarity regarding the systematic

76 Sequences obtained blasted to 9 phyla, 66 genera, and 401 human oral taxa (HOT) in the 1

77 ither a close relationship between these two phyla, a striking pattern of early convergent evolution,

78 e PCR (qPCR) revealed significant changes in phyla abundance, particularly Verrucomicrobia together w

79 The phyla abundances were affected by the environmental fact

80 natures of runaway transcription in distinct phyla across the bacterial domain.

81 tect 296 families of eukaryotes, spanning 19 phyla across the catchment of a river.

82 amilies associated with nearly all bacterial phyla across virtually every ecosystem.

83 lization in echinoderms, while in many other phyla, across metazoans, it controls tubulogenesis and v

84 The phyla Actinobacteria and Firmicutes were more abundant i

85 atic compounds, including those of candidate phyla Aerophobetes, Aminicenantes, TA06 and Bathyarchaeo

86 The communities dominated by these two phyla also contained distinct populations of sulphate-re

87 bored prokaryotes affiliated with fifty-nine phyla, among which the most abundant were Proteobacteria

88 rs in both reactors were affiliated with the phyla Anaerolinea, Ignavibacteria, and Proteobacteria.

89 tors across both vertebrate and invertebrate phyla and (2) there may be an interaction between NMDA r

90 Twenty-one phyla and 137 genera were shared by all pigs, whereas 12

91 MiSeq high-throughput sequencing revealed 22 phyla and 88 genera of the bacteria.

92 homologous to those of non-bilaterian animal phyla and Bilateria.

93 ling pathway controls innate immunity across phyla and embryonic patterning in insects.

94 annelids is one of the most disparate animal phyla and encompasses ambush predators, suspension feede

95 ter resolution of species and strains across phyla and functional content, while highlighting challen

96 ents treated with aldafermin, with all major phyla and genera unaltered during therapy.

97 amate receptors (iGluRs) from diverse animal phyla and identified a highly conserved motif, which we

98 ss three Proteobacteria classes, three other phyla and in Thermoplasma acidophilum, an Archaea.

99 es in Firmicutes and fewer in Actinobacteria phyla and more sequences in the genera Bacteroidetes [G-

100 e detected organisms from 24 known bacterial phyla and one archaeal phylum.

101 hold even when the tree is composed by many phyla and only one of them is being altered.

102 for reducing wiring costs are shared across phyla and point to the possibility of generalizable rule

103 ia shows the overwhelming presence of diderm phyla and the non-monophyly of monoderm ones, pointing t

104 prevalent in the human gut microbiome across phyla and to replicate in different cohorts.

105 n as a specialized RNA binding domain across phyla and underscore the molecular mechanism underlying

106 ein family occurs across different bacterial phyla and varies widely in both protein sequence and cor

107 lacking isolated representatives (candidate phyla) and from as-yet undefined lineages.

108 -assembled samples), expand underrepresented phyla, and are enriched in non-Westernized populations (

109 ncovered MrfAB homologs in diverse bacterial phyla, and cross-complementation indicates that MrfAB fu

110 , resulting in bioluminescence across animal phyla, and describes and characterizes the first putativ

111 lated genes are present across diverse plant phyla, and fall within the IGT gene family.

112 e tested 59 species representing most fungal phyla, and found that 53 species produce LCOs that can b

113 cases of transporter-gene HGT between fungal phyla, and investigate compatibility, localization, func

114 thin a phylum but at different rates between phyla, and is frequently associated with gene shortening

115 bably ancestral to almost half of the animal phyla, and therefore its study is essential for understa

116 porter (VGLUT), a mechanism conserved across phyla, and this study reports a previously unknown role

117 y valence-encoding interneurons exist across phyla, and valence is typically determined by whether ap

118 is often unsuccessful, while most of the low phyla animals can re-grow many parts of their body after

119 ent classes (Insects and Myriapods) and even phyla (Arthropods and Platyhelminthes), that dampens the

120 lthough it has been allied to such disparate phyla as the Mollusca, Annelida or Chordata, it remains

121 at represent the majority of known bacterial phyla as well as 47 newly discovered phylum-level lineag

122 ersists after flagellum disassembly in other phyla as well.

123 belonging to diverse early-branching fungal phyla, as evidenced by the genomic presence of both Sec

124 e embedding space resolved differences among phyla, as well as differences among genera within the sa

125 a, Cycloclasticus), including putative novel phyla, as well as other groups with previously unqualifi

126 Roseobacter clade), including putative novel phyla, as well as other groups with previously unqualifi

127 communities were dominated by members of the phyla Ascomycota and Basidiomycota, and also by Chytridi

128 amplicon sequence variants dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota and C

129 They were dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota and M

130 e last common ancestor of three major fungal phyla-Ascomycota, Basidiomycota, and Mucoromycota.

131 ues occur in all genomes examined across the phyla, averaging one site every 2,000-4,000 base pairs.

132 OTUs were disproportionately drawn from the phyla Bacteroidetes and Proteobacteria.

133 nine species, with representatives from the phyla Bacteroidetes, Firmicutes, Actinobacteria and Prot

134 Abundances of dominant phyla (Bacteroidetes, Firmicutes and Proteobacteria) wer

135 tive abundance of the dominant gut bacterial phyla, Bacteroidetes and Firmicutes, did not differ betw

136 Animals are grouped into ~35 'phyla' based upon the notion of distinct body plans.

137 ar trend, repeated across each of the fungal phyla (Basidiomycota, Ascomycota, Zygomycota, Chytridomy

138 hyla radiation (CPR) and as yet uncultivated phyla belonging to the DPANN (Diapherotrites, Parvarchae

139 t significant differences in oral microbiome phyla between chimpanzees and anatomically modern humans

140 pre-mRNAs in select species across multiple phyla but is particularly prevalent in Nematoda.

141 ains are widely distributed across bacterial phyla but multi MCE domain-containing proteins evolved i

142 rity of the diversity was bacterial, with 59 phyla, but also represented were nine Archaea, 18 Animal

143 rs, which promoted their distribution across phyla by horizontal gene transfer.

144 0% relative abundance in the metagenome, the phyla Chloroflexi (bacteria), Chytridiomycota (fungi) an

145 1 are organohalide-respiring microbes of the phyla Chloroflexi and Firmicutes, respectively.

146 sity patterns differ among taxonomic groups (phyla/classes) within bacterial or fungal communities.

147 rgently from homologous dehalogenases across phyla (Cnidaria, Echinodermata, and Chordata).

148 ation is a pronounced trait of CPR and DPANN phyla compared to other bacterial and archaeal phyla.

149 Together, these three phyla comprise the deuterostomes.

150 ms to be broadly distributed amongst diverse phyla, consistent with other ParE/RelE superfamily TAs,

151 Candidate phyla (CP) are broad phylogenetic clusters of organisms

152 The most abundant phyla detected were Annelida (66.4% reads) followed by a

153 ly in echinoderms, mollusks, and cnidarians, phyla drawn from the 3 major clades of eumetazoans.

154 terns are conserved within certain bacterial phyla, e.g. Firmicutes, but show different patterns in o

155 Conservation across phyla emphasizes the long-standing importance of the Psp

156 ave uncovered a major radiation of candidate phyla encompassing the Patescibacteria superphylum.

157 ng animal evolution is where early branching phyla, especially sponges and comb jellies (sea gooseber

158 ries of 25 archaeal species belonging to the phyla Eury-, Cren- and Thaumarchaeota facilitates their

159 of halophilic and halotolerant taxa from the phyla Euryarchaeota, Proteobacteria, Balneolaeota, Bacte

160 undance of facultative anaerobic taxa of the phyla Firmicutes (families Ruminococcaceae and Turicibac

161 In the bacterial phyla Firmicutes and Bacteroidetes, xanthine phosphoribo

162 which was comprised mostly of the bacterial phyla Firmicutes, Actinobacteria, and Proteobacteria.

163 the relative abundance of dominant bacterial phyla (Firmicutes, Fusobacteria, Bacteriodetes, and Acti

164 bacterial profile was dominated by two main phyla, Firmicutes, closely followed by Bacteroidetes.

165 The gut microbiotas were dominated by three phyla: Firmicutes (62.9%), Proteobacteria (29.9%) and Fu

166 d Firmicutes (31.2%) were the most prevalent phyla, followed by Bacteroidetes (13.6%), Proteobacteria

167 with abrupt changes in relative abundance of phyla from sample to sample.

168 h tumors supported altered abundances in the phyla Fusobacteria, Firmicutes, Actinobacteria and Prote

169 High-diversity CSTs and specific bacterial phyla (Gardnerella vaginalis and Prevotella bivia) were

170 ood group intakes and abundances of specific phyla, genera, and species.

171 found in 8 different bacterial and archaeal phyla genetically couple to metalloproteins related to b

172 The 47 phyla including 11 dominant phyla (>1%) in E. splendens rhizosphere were presented.

173 Notably, eight genera, belonging to four phyla, had significant increases in abundance in treated

174 alyses provide evidence for their existence, phyla have also been criticized as lacking an objective

175 ly six of the 27 currently proposed archaeal phyla have cultured representatives.

176 Organisms from many different phyla have evolved an impressive arsenal of light manipu

177 Experiments in animals across phyla have shown that motion percepts incorporate both p

178 Across phyla, HSCs arise from hemogenic endothelium in the vent

179 nobacteria, and Firmicutes were the top five phyla identified from all samples.

180 Less than 50% of phyla identified via amplicon sequencing were recovered

181 ble variety of organisms from little studied phyla in Crystal Geyser (Utah, USA), a site where deeply

182 Nematodes comprise one of the largest phyla in the animal kingdom, both in terms of individual

183 e' to the explosive diversification of these phyla in the Cambrian, c. 540-530 million years ago.

184 es and Actinobacteria were also the abundant phyla in the given samples.

185 n-associated Bacteroidetes--one of two major phyla in the gut--also encode machinery for contact-depe

186 Although nervous systems are diverse across phyla, in many taxa the larva forms an anterior concentr

187 ed 101 distinct bacterial strains spanning 6 phyla including (1) novel strains with <98% 16S rRNA seq

188 The 47 phyla including 11 dominant phyla (>1%) in E. splendens

189 y at all taxonomic levels and identified 127 phyla, including 115 not previously represented in the S

190 ts have recently been characterized in basal phyla, including Cnidaria (sea anemones, corals, hydras,

191 y embryonic development in eggs from diverse phyla, including Cnidaria, Echinodermata, and Chordata.

192 detoxify H2O2, are widely distributed in all phyla, including cyanobacteria.

193 reference conservation, although not for all phyla, including the phylum with the highest average rel

194 covery of shared behavioral processes across phyla is a significant step in the establishment of a co

195 sity of body plans between distantly related phyla is due to the differential expression patterns of

196 wide diversity of bacteria and archaea from phyla lacking isolated representatives (candidate phyla)

197 ined, and OTUs were assigned to 10 bacterial phyla, led by Bacteroidetes (51.2%) and Firmicutes (27.1

198 s revealed generally similar patterns at the phyla level but they were different at the genus level.

199 were the predominant bacterial group at the phyla level with over 50% frequency in all steps while t

200 nomic rank-level alterations (e.g. family to phyla-level) of the gut microbiota.

201 s resulted in the description of several new phyla, many of which are globally distributed and are am

202 ety of sources by the early-diverging fungal phyla Microsporidia and Cryptomycota.

203 Evidence was available on four phyla: mollusks, crustaceans, fish, and echinodermata.

204 of Esrp-dependent splicing programs between phyla, most developmental defects observed in vertebrate

205 Across animal phyla, motion vision relies on neurons that respond pref

206 We also detected taxa belonging to the rare phyla Mucoromycota and Rozellomycota, which have been di

207 with cirrhosis had lower abundances of five phyla, namely Tenericutes, Cyanobacteria, Spirochaetes,

208 pansion of the Firmicutes and Proteobacteria phyla, near elimination of Bacteroidetes, and marked red

209 Putative oligotrophic (e.g., phyla Nitrospirae and Cyanobacteria) and copiotrophic (e

210 tially, and switching between different host phyla occurred multiple times in palaemonid evolutionary

211 We found six phyla of amoeba-associated bacteria: Proteobacteria, Bac

212 n marine Bacteroidetes but modified in other phyla of marine heterotrophic bacteria.

213 ction representing members of the four major phyla of the poultry microbiota was assembled, including

214 his production was examined according to the phyla of the tested strains and the type of chelating fu

215 We found that the major phyla of this halophilic community have different levels

216 s of all eukaryotic super-groups and several phyla of uncertain position.

217 widely distributed within several bacterial phyla, play a role in the formation of novel yet unknown

218 ision of labor among differing highly social phyla points to a resemblance of outcomes arising from v

219 The results show that the most abundant phyla present in bushmeat samples include Firmicutes (67

220 terases in many bacterial species, including phyla previously not known to utilize cGAMP signaling.

221 00 viral sequences, revealing nine microbial phyla previously unreported to be infected by viruses.

222 tes were mainly attributed to members of the phyla Proteobacteria (14% to 68%), Firmicutes (26% to 41

223 t communities are dominated by the bacterial phyla Proteobacteria and Firmicutes.

224 Obligate methanotrophs belonging to the Phyla Proteobacteria and Verrucomicrobia require oxygen

225 e between the microbiome of CM and H milk in phyla Proteobacteria, Bacteroidetes, Firmicutes and Acti

226 ety of bacteria in C. elegans habitats, with phyla Proteobacteria, Bacteroidetes, Firmicutes, and Act

227 ized by increased abundance of the bacterial phyla Proteobacteria, Deferribacteres, and TM7, among wh

228 D14(+)CD11c(+) macrophages from mucus in two phyla (Proteobacteria [p = 0.01] and Actinobacteria [p =

229 one of the earliest-branching extant animal phyla, providing a unique opportunity to explore the evo

230 Molluscs, one of the most disparate animal phyla, radiated rapidly during the early Cambrian period

231 ene surveys, mostly members of the Candidate Phyla Radiation (CPR) and as yet uncharacterized Archaea

232 duced organisms from the bacterial candidate phyla radiation (CPR) and as yet uncultivated phyla belo

233 Candidate phyla radiation (CPR) bacteria separate phylogenetically

234 al fungi, viruses, phages, and the candidate phyla radiation (CPR) group of ultrasmall bacteria have

235 The Candidate Phyla Radiation (CPR) is a large group of bacteria, the

236 on, and the impact of exclusion of candidate phyla radiation (CPR) taxa.

237 ultivated, groundwater-associated, Candidate Phyla Radiation bacteria only rarely replicate quickly i

238 P3), Parcubacteria (OD1) and other Candidate Phyla Radiation bacteria, and SR1 in the hypersaline str

239 understanding of these ultrasmall Candidate Phyla Radiation bacteria.

240 wo populations of Gracilibacteria (Candidate Phyla Radiation) displayed successive blooms, potentiall

241 haribacteria phylum is a member of Candidate Phyla Radiation, a large lineage previously devoid of cu

242 ch resolve to TM7, a member of the Candidate Phyla Radiation, forming six monophyletic clades that di

243 ral microbiome and are part of the Candidate Phyla Radiation.

244 systems encoded by members of the Candidate Phyla Radiation.

245 n and putative microbes, including Candidate Phyla Radiation.

246 The predominant phyla regulated by 2'-FL, GOS and lactose were significa

247 of visual neuropils evolved among different phyla remain open.

248 The position of Chaetognatha among metazoan phyla remains equivocal-neither morphological nor molecu

249 793 near-complete microbial genomes from 18 phyla, representing around one-third of all microorganis

250 used for very different applications across phyla, requiring different precision-recall trade-offs.

251 At resolution, these phyla returned to baseline, except for synergistetes.

252 Searches for the Psp system across phyla reveal conservation of only one protein, PspA.

253 ass averaging 581 nt and present in multiple phyla, several highly conserved and widespread ncRNA cla

254 bacteria use to degrade starch differ across phyla, some molecular details converge to promote the op

255 bloom-forming microalgae spanning different phyla, some of public health concerns (Prorocentrum) in

256 s contained the same five dominant bacterial phyla (Spirochaetes, Firmicutes, Proteobacteria, Fibroba

257 he time points, showing an enrichment of the phyla Spirochetes, Fusobacteria, and Bacteroidetes assoc

258 elevation maximum in diversity in any of the phyla studied, and different diversity trends for the di

259 tion includes 18 model organisms spanning 10 phyla/subphyla of bacteria and archaea that were sequenc

260 Additionally, comparisons with other phyla suggest that a delay in trunk development is a fea

261 ses are broadly distributed across bacterial phyla, suggesting that they play important roles in bact

262 e widespread across bacterial and eukaryotic phyla, suggesting that they were present in the last com

263 been defined previously for three of the ten phyla, suggesting that transcriptional circuits and sign

264 Brachiopods and mollusks are 2 shell-bearing phyla that diverged from a common shell-less ancestor mo

265 mprised of genes from a variety of microbial phyla that may play roles in stress responses and microb

266 Across phyla, the ribosomes-the central molecular machines for

267 resentative species from five more spiralian phyla-the annelids, nemerteans, phoronids, brachiopods a

268 ntial to the evolution of other 'successful' phyla: the exoskeleton in ecdysozoan invertebrates and t

269 Of 117 isolates from 64 species across 4 phyla, this assay identified bacteria with >89% accuracy

270 idaria and Ctenophora are the first metazoan phyla to evolve tissue-level organization and differenti

271 e eye design, mechanisms have evolved across phyla to stabilize gaze.

272 ving Japanese coastal marine species from 16 phyla transported over 6 years on objects that traveled

273 olved rapidly and independently in different phyla utilizing preexisting components.

274 ystem in prokaryotes, while inter- and intra-phyla variations within the system indicate adaptation t

275 The relative abundances of some dominant phyla varied along the pH gradient, and the enrichment o

276 ved from commensal microbiota act in diverse phyla via conserved molecular pathways to promote health

277 essing PORCN protein from different metazoan phyla, we demonstrate here that PORCN active-site featur

278 acteroidetes, Firmicutes, and Proteobacteria phyla, we found that potent Nod-like receptor-stimulatin

279 archaea and bacteria representing all major phyla, we identify substantial, albeit highly variable,

280 orted conservation of mid-development within phyla, we propose that a phylum may be defined as a coll

281 within the Bacteroidetes and Proteobacteria phyla were already present at 5 weeks after birth, where

282 The most abundant phyla were Firmicutes [mean relative abundance (SD), 42.

283 cultures, and pus, bacteria from 5 different phyla were identified.

284 liverworts, mosses and hornworts, but these phyla were not ancestrally high silica-producers.

285 rofiles of fungi, archaea and most bacterial phyla were significantly different among seasons.

286 The bacterial phyla were similar in wild-type and EPI-/- skin.

287 es, belonging to 169 genera and 14 different phyla, were identified.

288 different diversity trends for the different phyla, when different diversity indices were used.

289 ppa-carrageenases from two distant bacterial phyla, which belong to glycoside hydrolase family 16 and

290 family invertases homologs from 16 bacterial phyla, which potentially catalyze hsdS inversions in the

291 thin phylum-level lineages called "candidate phyla," which lack isolated representatives and are poor

292 ernalised by members of at least three major phyla with different feeding mechanisms.

293 hree dataset tested, which represented three phyla with different ranges of species diversity and dif

294 Indeed, phyla with fewer taxa showed the most discordance among

295 ational taxonomic units (OTUs), Families and Phyla with high heritability.

296 belong to novel lineages, and two represent phyla with no previously sequenced genome.

297 ncompassing >750 marine organisms from seven phyla with oceanographic data on current speeds, to quan

298 eated with levofloxacin were depleted of all phyla with the exception of Firmicutes, but doxycycline

299 Dolphins harbour 30 bacterial phyla, with 25 of them in the mouth, several abundant bu

300 This varied by animal phyla, with invasive plants reducing the abundance of na