ライフサイエンスコーパス: phylogenetic

1 ionary parameters in population genetics and phylogenetics.

2 ted to supply essentially unlimited data for phylogenetics.

3 ortant neural characteristics related to the phylogenetic affinities and relationships of the chiropt

4 tent of original biomineralization and their phylogenetic affinity.

5 the Solanum tuberosum (potato) genome using phylogenetic, amino acid sequence, 3-D protein modeling,

6 Phylogenetic analyses across New World flycatchers (Tyra

7 We combined phylogenetic analyses and conserved domain identificatio

8 Phylogenetic analyses applying different optimality crit

9 Combined epidemiological and phylogenetic analyses indicate multiple independent intr

10 Phylogenetic analyses indicate that Val76 is not monophy

11 Maximum-likelihood and Bayesian inference phylogenetic analyses of 13 PCGs and 68 terminals suppor

12 For example, in-depth phylogenetic analyses of hormone signaling components ar

13 ere assigned to species based on multi-locus phylogenetic analyses of nrITS, GAPDH and TUB2 for CASC,

14 Phylogenetic analyses of viral genomes from two cases re

15 Here, we perform comparative phylogenetic analyses on Australian rodents (Muridae: Hy

16 Phylogenetic analyses place this new taxon as a proximat

17 ation is shared with extant Magelonidae, and phylogenetic analyses recover Dannychaeta within Palaeoa

18 Phylogenetic analyses reveal that these form-function as

19 Phylogenetic analyses revealed a large diversity of alph

20 Phylogenetic analyses revealed that magnoliids were sist

21 Phylogenetic analyses revealed that paralogs found in ma

22 Phylogenetic analyses revealed that two of the genomes b

23 Phylogenetic analyses revealed that while a few genes cl

24 Phylogenetic analyses revealed the cryptic introduction

25 Phylogenetic analyses revealed the presence of 8 diverge

26 during the aquatic-to-land transition, with phylogenetic analyses revealing the presence of numerous

27 Comparative genomics and phylogenetic analyses within the Malassezia genus reveal

28 events, population structure and comparative phylogenetic analyses, to examine evidence for this mode

29 ermined using the Stanford HIVdb program and phylogenetic analyses.

30 Phylogenetic analysis across different kingdoms shows th

31 Systematic phylogenetic analysis allowed us to propose similar regu

32 IGEs from 2168 genomes, along with integrase phylogenetic analysis and gene inactivation tests, revea

33 to two subtypes (DTEW and DTEF) according to phylogenetic analysis and the presence of highly conserv

34 Phylogenetic analysis based on 79 craniodental and 20 po

35 Phylogenetic analysis based on ITS2 and COX1 genes revea

36 The phylogenetic analysis demonstrated the lack of clonal ev

37 Phylogenetic analysis identifies MARVs that are similar

38 Phylogenetic analysis implies CRESS viruses infecting mu

39 Genetic mapping and phylogenetic analysis indicate that the duplications giv

40 Last, while phylogenetic analysis indicates a bat origin of 2019-nCo

41 Phylogenetic analysis is complicated by interspecific ge

42 Phylogenetic analysis of 84 distinct SARS-CoV-2 genomes

43 A phylogenetic analysis of class I RNRs suggests that acti

44 Phylogenetic analysis of genome sequences identified two

45 In recent years, phylogenetic analysis of HIV sequence data has been used

46 Phylogenetic analysis of more than 4000 annotated bacter

47 Our phylogenetic analysis of NCLDV metabolic genes and their

48 Phylogenetic analysis of pol sequences showed a cluster

49 addressed this by performing a comprehensive phylogenetic analysis of the Cdc14 family and comparing

50 Phylogenetic analysis of the genes of the echinocandin b

51 Phylogenetic analysis of the nanopore- and Sanger-derive

52 Phylogenetic analysis places Dineobellator within Veloci

53 Phylogenetic analysis places SFV in a basal position amo

54 Our phylogenetic analysis places the majority of these genom

55 HPG in multiple pteropid bat species, while phylogenetic analysis places these bat viruses as the ba

56 In contrast to PFGE, WGS phylogenetic analysis refuted an epidemiological link be

57 Phylogenetic analysis revealed 20 OsPLDalpha1 cDNA varia

58 Genomic-based similarity and a phylogenetic analysis revealed multiple clusters (n = 16

59 Phylogenetic analysis revealed that lamprey GHR and PRLR

60 Phylogenetic analysis revealed that the hemagglutinin (H

61 The 16S rDNA sequencing and the phylogenetic analysis revealed the close evolutionary re

62 Phylogenetic analysis showed Asp t 36 to be highly conse

63 A phylogenetic analysis shows that FabIs fall into four di

64 Phylogenetic analysis shows that POLGARF evolved ~160 mi

65 Phylogenetic analysis shows the triad emerged in GPR65,

66 Phylogenetic analysis suggested that VvAHGD and its homo

67 We include a phylogenetic analysis that predicted that many other ins

68 Here, we combine structural modeling with phylogenetic analysis to shed light on archaeal histone

69 osen for whole-genome sequencing (WGS) and a phylogenetic analysis was performed to detect clustering

70 fy correlates of prevalent HCV, and Bayesian phylogenetic analysis was used to examine genetic cluste

71 he genomic dynamics of OROV that encompasses phylogenetic analysis, evolutionary rate estimates, infe

72 In phylogenetic analysis, Kongonaphon is recovered as a mem

73 Likewise, through phylogenetic analysis, the evolutionary relationship of

74 position is robustly supported by multigene phylogenetic analysis.

75 T-PCR-positive individual and assessed using phylogenetic analysis.

76 rus deep-sequenced at sufficient quality for phylogenetic analysis.

77 clinical interventions using virological and phylogenetic analysis.

78 ic acid gyrase (gyrB) genes and conducting a phylogenetic analysis.

79 aluated the potential influences of distinct phylogenetic and biogeographic histories on the isotopic

80 we provide a comprehensive evaluation of the phylogenetic and biogeographic patterns of antiinfective

81 Phylogenetic and electrochemical similarities between re

82 Our findings expand the phylogenetic and environmental occurrence of infaunal mo

83 (SARS-CoV-2) into Scotland using a combined phylogenetic and epidemiological approach.

84 Phylogenetic and evolutionary assessments reveal a remar

85 Phylogenetic and functional analyses associated the occu

86 The phylogenetic and functional diversity of air microbiome

87 Phylogenetic and functional tests suggest that H gained

88 However, the phylogenetic and genomic recombination properties of thi

89 ep towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 g

90 Phylogenetic and mutational analysis in combination with

91 of a cluster was strongly supported by both phylogenetic and network analyses of HIV-1 pol sequences

92 Phylogenetic and network inferences, drug resistant muta

93 rects for false identifications and performs phylogenetic and time series analysis for the study of m

94 ble to statistically similar models found in phylogenetics and macroevolution, for example.

95 We also identified situations in which phylogenetic approaches alone are not sufficient to reco

96 rate testes mass dataset ever collected with phylogenetic approaches for measuring rates of morpholog

97 Using phylogenetic Bayesian hierarchical models and high-resol

98 ively infer community assembly mechanisms by phylogenetic bin-based null model analysis (iCAMP).

99 logenases throughout the phylum expanded the phylogenetic boundary for potential organohalide respira

100 a total of 274 tumor regions showed that new phylogenetic branches emerge at a higher frequency per s

101 ability typically emerged through collateral phylogenetic branching, leading to spatial variability i

102 HIV-1 DRMs and phylogenetic characteristics were determined using the S

103 We discovered a phylogenetic clade shared between bryophytes and higher

104 tions in the HA gene has resulted in several phylogenetic clades, while reassortment with other avian

105 Phylogenetic clustering analysis revealed that this was

106 pendent introductions to Guangdong, although phylogenetic clustering is uncertain because of low viru

107 his application allows the identification of phylogenetic clusters and genotypes from assembled genom

108 approaches (subtype categorization to define phylogenetic clusters and the development of an SNP cut-

109 abidopsis thaliana) contains 12 ALAs in five phylogenetic clusters, including four in cluster 3 (ALA4

110 abolic oxygen respiration was limited to two phylogenetic clusters, the presence of genes encoding pu

111 ess this question, we compiled a dataset for phylogenetic comparative analysis of long-term fruit/see

112 Here, using a phylogenetic comparative approach, we study the evolutio

113 Phylogenetic comparative methods are powerful but presen

114 ual mortality in wild bird populations using phylogenetic comparative methods.

115 Phylogenetic comparison taking advantage of 20 resolved

116 Without phylogenetic consensus, the systematic provenance of any

117 damage resistance (measured by tannins); and phylogenetic conservatism of network architecture is low

118 ramework for quantifying trait correlations, phylogenetic constraints and spatial variability at larg

119 nds of secondary metabolites, independent of phylogenetic constraints.

120 as relatively unaffected by correlations and phylogenetic constraints.

121 phenotypes, the essential investigations for phylogenetic constructs of the evolutionary origins of c

122 tein domain content and provide temporal and phylogenetic context for interpreting these innovations.

123 of biomechanical characters, within a robust phylogenetic context, to investigate functional pathways

124 Specifically, we combine taxonomic and phylogenetic data for >7,500 seed plant species from the

125 nly available species' trait, occurrence and phylogenetic data with gridded, high-resolution environm

126 of speciation and phenotypic evolution using phylogenetic data.

127 To employ phylogenetic dating methods, recombinant regions of a 68

128 etween taxonomic dietary diversity (TDD) and phylogenetic dietary diversity (PDD) in a species-rich c

129 th likelihood estimation based on systematic phylogenetic disease bracketing.

130 ted bacteria showed high correlation between phylogenetic distance and metabolic competition/cooperat

131 The phylogenetic distance between Yaravirus and all other vi

132 pair of microbial species, adjusted by their phylogenetic distance.

133 By relatively timing events using phylogenetic distances, we inferred that duplications in

134 rage pairs of bacterial species with similar phylogenetic distances.

135 ding to this gene cluster and found that its phylogenetic distribution correlates with medium chain a

136 At the generic level, phylogenetic diversity and endemism are mainly concentra

137 in terms of their taxonomic, functional and phylogenetic diversity and functional-trait composition.

138 Here we develop two new metrics that combine phylogenetic diversity and the extent of human pressure

139 otheses using metrics for both taxonomic and phylogenetic diversity and turnover.

140 is accompanied by patterns in functional and phylogenetic diversity as some hypotheses predict, and w

141 ough assessments of leaf evolution and plant phylogenetic diversity at global scales.

142 ctive models of regional plant taxonomic and phylogenetic diversity in response to a wide range of en

143 The catalog expands the known phylogenetic diversity of bacteria and archaea by 44% an

144 e strong shifts in taxonomic, functional and phylogenetic diversity of forest communities.

145 The communities whose phylogenetic diversity primarily aligns with that of the

146 species richness, richness-independent host phylogenetic diversity, and colonization by exotic host

147 ies richness, effective species numbers, and phylogenetic diversity.

148 mphibious taxa sampled from across mammalian phylogenetic diversity.

149 imple yet fundamental problem (which we call phylogenetic double-placement) has enjoyed surprisingly

150 ere, we calculate weighted endemism (WE) and phylogenetic endemism (PE) separately for all birds and

151 ical cradles of honey bees are the result of phylogenetic error.

152 Our phylogenetic estimates of the origin and latitudinal spr

153 inated in Australia and spread to Asia, with phylogenetic evidence of repeated reintroduction of B. p

154 s an important development stemming from the phylogenetics field.

155 ch we combined with a statistically rigorous phylogenetic footprinting pipeline based on precomputed

156 Fossil identifications made in a phylogenetic framework are beholden to specific tree hyp

157 We provide a phylogenetic framework relating diverse GT-A fold famili

158 ing geometric morphometric methods, within a phylogenetic framework, we were able to determine the co

159 mon ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of cr

160 To fill this phylogenetic gap, we characterize the functions of two A

161 Using phylogenetic generalized linear mixed models, we analyse

162 isoforms are conserved among members of this phylogenetic group.

163 vestigate the relationship among C. sinensis phylogenetic groups and specialized metabolites using tr

164 icutes, but show different patterns in other phylogenetic groups such as Actinobacteria.

165 and clinical symptoms did not correlate with phylogenetic groups.

166 z-type (FhKT) inhibitors dispersed into five phylogenetic groups.

167 s to include novel species from less-studied phylogenetic groups.

168 wet to arid biomes), and a new, large-scale phylogenetic hypothesis for the genera that occur in the

169 Phylogenetics identified multidrug-resistant strains as

170 be primitive metazoans, but resolving their phylogenetic identity has remained a point of contention

171 To do so, we develop a phylogenetic index to quantify the relative number of de

172 nd horizontal gene transmission may confound phylogenetic inference and obscure our ability to accura

173 15 generations, and use it for benchmarking phylogenetic inference approaches.

174 MapGL makes phylogenetic inference of species-specific sequence gain

175 MapGL simplifies phylogenetic inference of the evolutionary history of sh

176 iterative hidden Markov model searching and phylogenetic inference.

177 ransmission networks in arbitrary space from phylogenetic information and metadata.

178 Our study suggests that genomic and phylogenetic information may help predict aggregate micr

179 Here, we explored the potential of phylogenetic informativeness and tree confidence analyse

180 be used during an epidemic and propose that phylogenetic insights from the early stages of an outbre

181 g only recently in the clinic, ST313 L3 is a phylogenetic intermediate between ST313 L1 and L2, with

182 m is a lack of diagnostic features; that is, phylogenetic interpretations have largely centered on th

183 onstrained at the developmental, genetic and phylogenetic level is unknown.

184 (Mtb) strains are classified into different phylogenetic lineages (L), three of which (L2/L3/L4) eme

185 plants are not uniformly distributed across phylogenetic lineages, with some families contributing d

186 esistant taxa occur within three independent phylogenetic lineages.

187 Here, we used a phylogenetic meta-analysis to determine how the mean and

188 Statistical phylogenetic methods are often used to model the mutatio

189 we demonstrate that combining sequence-based phylogenetic methods with structural information assists

190 is to identify 8 trophic guilds and Bayesian phylogenetic modeling to show that trophic guilds can be

191 sease 2019 (COVID-19) cases, indicating that phylogenetic networks can likewise be successfully used

192 iomechanical analyses have not accounted for phylogenetic non-independence (e.g., [13-16]) or been re

193 r the arcuate fasciculus, reveals an earlier phylogenetic origin and illuminates its remarkable trans

194 in tannin-rich plants, which share a single phylogenetic origin c.

195 We tested these predictions using phylogenetic path analysis, modelling hypothesized direc

196 s review, we explore what is known about the phylogenetic pattern of flowering control in grasses, an

197 Against a backdrop of no biogeographic and phylogenetic patterning in population change, we uncover

198 Phylogenetic patterns in the naturalized flora partly re

199 in the naturalized flora partly result from phylogenetic patterns in the plants we cultivate.

200 These "co-phylogenetic" patterns are signatures of ancient co-spec

201 nclusion with potential implications for the phylogenetic placement and palaeoecology of frondose org

202 Phylogenetic placement methods to contextualize hundreds

203 Using 18,514 sequences, we perform phylogenetic, population genetics, and structural bioinf

204 hological analysis provides evidence for the phylogenetic position of Aenigmachanna as the sister gro

205 The ancestral phylogenetic position of the West Beringian group and di

206 The phylogenetic position of this group is contentious as mo

207 Its phylogenetic position, along with that of other Maastric

208 As a result of its phylogenetic position, conservation across Symbiodiniace

209 Compatible with its phylogenetic position, H. atra not only expresses verteb

210 HogProf enables large-scale phylogenetic profiling across the three domains of life,

211 Phylogenetic profiling has customarily been more widely

212 enus Saimiri is a decades-long taxonomic and phylogenetic puzzle to which cytogenetics has contribute

213 To address this and other phylogenetic questions, here, we present new reference g

214 The phylogenetic range of the family has recently been enhan

215 abundance in gut microbiomes and restricted phylogenetic range, all of the identified genes were det

216 Rarity and phylogenetic rarity - direct measures of the number of s

217 Recent phylogenetic re-organization efforts are supported by th

218 We show that the weighted CND improves phylogenetic reconstruction on simulated data where CNAs

219 Robust phylogenetic reconstructions across Euglenozoa are now p

220 ddition, we show the relationship of ISMs to phylogenetic reconstructions of SARS-CoV-2 evolution, an

221 y to address these concerns, including using phylogenetic relatedness to address intercorrelation.

222 After accounting for phylogenetic relatedness, we found DEE scales with body

223 ever, these two patterns only stand when the phylogenetic relations between prey are accounted for wh

224 A-dependent-RNA polymerase (L) gene revealed phylogenetic relationship among SRMVs in a pattern simil

225 use of false-positive testing results, their phylogenetic relationship, and their susceptibility prof

226 e a unique microstructure indicating a close phylogenetic relationship, consistent with the early div

227 Phylogenetic relationships among extinct hominoids (apes

228 Using phylogenomic data, we firmly establish phylogenetic relationships among the major lineages and

229 We reassess their phylogenetic relationships and show that the closest rel

230 We used a concatenated matrix to assess the phylogenetic relationships by Bayesian inference (BI) an

231 The incongruence of character states with phylogenetic relationships is often interpreted as evide

232 morphology for addressing the controversial phylogenetic relationships of fossil apes.

233 t prolific producer strains, knowledge about phylogenetic relationships of Streptomyces species, geno

234 Here, we evaluate the phylogenetic relationships of the SEC14L-PITP superfamil

235 Phylogenetic relationships within Pulsatilla were certai

236 plied for estimating population dynamics and phylogenetic relationships, economical and generalized m

237 e of once controversial hypotheses regarding phylogenetic relationships, hybridization and introgress

238 has outpaced our ability to accurately infer phylogenetic relationships.

239 hand, it can also blur the reconstruction of phylogenetic relationships.

240 ly, sites of >45 degrees C were inhabited by phylogenetic relatives of taxa for which laboratory grow

241 he frog Xenopus laevis to expand gnathostome phylogenetic representation and facilitate side-by-side

242 Our study highlights the limits of phylogenetic resolution in relation to rapid successive

243 nd frequently-studied lizard clade for which phylogenetic resolution is notoriously elusive.

244 ses should consider multiple topologies when phylogenetic resolution or clear apomorphies are lacking

245 establishment of genome editing and improved phylogenetic resolution, are paving the way for a freshe

246 ved and developmentally constrained at broad phylogenetic scales.

247 ribute to this debate, as it displays strong phylogenetic signal among other mammals.

248 contrasts with high genomic heterogeneity in phylogenetic signal and introgression.

249 ancestral symptom intensities and check for phylogenetic signal associated with these symptom intens

250 a general advance of breeding with a strong phylogenetic signal but no systematic variation over spa

251 There is strong evidence for a phylogenetic signal in the degree to which species share

252 experiments to identify: whether there is a phylogenetic signal in the outcome of plant-soil feedbac

253 Besides revealing strong phylogenetic signal in the vestibule and enabling the pr

254 dicting species' differences in SINs through phylogenetic signal tests.

255 Wetland birds exhibit a strong phylogenetic signal towards urban tolerance; however, th

256 to identify these species, but insufficient phylogenetic signal was available.

257 hese traits present medium to high levels of phylogenetic signal, partly related to environmental sel

258 Here we clarify how phylogenetic signals could arise in plant-soil feedbacks

259 these models in the widely used statistical phylogenetic software platform RevBayes, allowing us to

260 omes from 1978 to 2014, showing the inherent phylogenetic stochasticity across subsets of the real HI

261 However, how they shape the functional and phylogenetic structure of root neighborhoods remains unc

262 Phylogenetic studies have resolved Radiodonta (also know

263 Multiple phylogenetic studies of HIV in sub-Saharan Africa have s

264 Phylogenetic studies suggest that DSR is rare in archaea

265 me editing in P patens Additionally, careful phylogenetic studies with increased resolution have sugg

266 The phylogenetic study revealed that EcLsi1 and EcLsi6 are h

267 RAG-2 PHD finger to RAG-1, here we employed phylogenetic substitution.

268 eneDB - to 45 organisms, encompassing a wide phylogenetic swath of animal evolution.

269 ry of the Asgard archaea, which harbor close phylogenetic ties to the eukaryotes, supports the idea t

270 We exploit sampling across wide phylogenetic timescales to validate SV genotypes and ass

271 We used maximum-likelihood and Bayesian phylogenetics to analyse new (N = 163) and previously pu

272 ncient introgression and infer the divergent phylogenetic topology for the white oak clade.

273 This phylogenetic trait indicates that recent adaptive evolut

274 Simulations are guided by a phylogenetic tree and incorporate different substitution

275 y of rheumatic fever-associated strains in a phylogenetic tree and to identify the presence of 10 pre

276 alled StrainHub, in which a user can input a phylogenetic tree based on genetic or other data along w

277 31 new models that expand the portion of the phylogenetic tree covered by BiGG Models.

278 We describe eMPRess, a software program for phylogenetic tree reconciliation under the duplication-t

279 sis of the dynamics shows that the resultant phylogenetic tree topology is scale-invariant due to a s

280 show that the approach outperforms Enhanced Phylogenetic Tree, a phylogeny-based method, and use the

281 Found throughout the phylogenetic tree, often in drug-like roles, their size,

282 can play an important complementary role to phylogenetic tree-based analysis, such as is done in the

283 with a newly generated time-calibrated mega-phylogenetic tree.

284 n the birth and death rates of lineages in a phylogenetic tree.

285 rstand eye development in animals across the phylogenetic tree.

286 place or source of isolation, mapped on the phylogenetic tree.

287 Neighbour-joining phylogenetic trees and direct sequence comparison were u

288 Phylogenetic trees based on different data sets were con

289 Phylogenetic trees describe both the evolutionary proces

290 In addition, the backbones of phylogenetic trees exhibit bursts of diversification on

291 However, the space of phylogenetic trees is not Euclidean, so ordinary machine

292 Whole-exome sequencing was used to construct phylogenetic trees of the PMNs and the ensuing HSTM clon

293 e results show how dynamical scaling laws of phylogenetic trees on long timescales can reflect the in

294 sample rooted networks and the embedding of phylogenetic trees within networks.

295 of sequence similarity measures to construct phylogenetic trees.

296 eduction and visualization over the space of phylogenetic trees.

297 ists to quantify similarity between pairs of phylogenetic trees.

298 roaches using genomic subsets to account for phylogenetic uncertainty in comparative analyses.

299 on as a case-study to explore the effects of phylogenetic uncertainty on fossil identification.

300 Here, we compared phylogenetic versus hybrid zone approaches of species de