ライフサイエンスコーパス: phylogeographic

1 loci that previously have been shown to have phylogeographic affinity have been analyzed for two popu

2 so highlights how sampling bias can confound phylogeographic analyses and demonstrates the importance

3 Results from phylogeographic analyses are consistent with Isla Mocha

4 Bayesian phylogeographic analyses are pivotal in reconstructing t

5 s in South America, we performed genetic and phylogeographic analyses of all available South American

6 We conducted phylogeographic analyses of an epiphytic orchid, Brassav

7 Molecular and phylogeographic analyses of B2a mitogenomes, which are a

8 Phylogeographic analyses of the 2,034 sequences revealed

9 Phylogeographic analyses of the mtDNA suggest that recen

10 Phylogeographic analyses of these data demonstrate (i) s

11 Detailed phylogeographic analyses of these haplogroups reveal ins

12 Phylogenetic and phylogeographic analyses reveal that species abundances

13 Phylogeographic analyses revealed that Clade A had been

14 Comparative phylogeographic analyses scaled up to large geographic r

15 Phylogeographic analyses show a North American origin fo

16 Phylogeographic analyses showed that most Bhutanese stra

17 Phylogeographic analyses showed that these epitopes are

18 Phylogeographic analyses suggest the MERS-CoV zoonotic r

19 Recently developed phylogeographic analyses that incorporate genealogical r

20 howcase conditions under which we can expect phylogeographic analyses to be biased, particularly diff

21 We used phylogeographic analyses to identify hotspots of the HIV

22 Our results highlight the utility of phylogeographic analyses to test hypotheses about paleoe

23 Furthermore, we performed phylogeographic analyses using 69 newly sequenced genome

24 Phylogeographic analyses were undertaken using plastid r

25 Bayesian phylogeographic analyses were used to evaluate transmiss

26 od allows to properly include, in continuous phylogeographic analyses, H5N1 sequences that are only a

27 chanistic epidemic simulations, supported by phylogeographic analyses, suggest that competition betwe

28 By integrating demographic modeling with phylogeographic analyses, we identified a statistically

29 In this work, phylogeographic analysis allowed the identification of m

30 Phylogeographic analysis can be described as the study o

31 Phylogeographic analysis has become a major tool for inv

32 Phylogeographic analysis identified 34 major transmissio

33 Phylogeographic analysis identified three major dispersi

34 can be useful for this, for example, using a phylogeographic analysis in which genomic data from mult

35 A time-calibrated phylogeographic analysis incorporating the new genomes s

36 Phylogeographic analysis indicated that GI-a diverged in

37 A phylogeographic analysis indicated that the genotype F v

38 Importantly, phylogeographic analysis indicates that EMRSA-16 spread

39 Discrete phylogeographic analysis largely recapitulates the docum

40 Phylogeographic analysis of five nuclear loci and morpho

41 We propose to use WGS for the phylogeographic analysis of human hantavirus infections.

42 By performing phylogeographic analysis of MPXV genomes sampled from 75

43 ntain sorrel (Oxyria digyna) by conducting a phylogeographic analysis of plastid and nuclear gene DNA

44 logical patterns, we undertook a large-scale phylogeographic analysis of viruses sampled from three l

45 A key component in phylogeographic analysis of zoonotic viruses involves id

46 Discrete phylogeographic analysis revealed (i) 1,032 viral introd

47 Finally, phylogeographic analysis revealed that hospitals have be

48 viral dispersal patterns, using statistical phylogeographic analysis run over bootstrap trees estima

49 Phylogeographic analysis showed strong support for viral

50 A phylogeographic analysis shows that DWV is globally dist

51 Finally, Bayesian phylogeographic analysis suggested gravity-like dynamics

52 Phylogeographic analysis suggests an origin of lineage I

53 Phylogeographic analysis suggests that central Cologne m

54 A timed phylogeographic analysis was performed on a subset of th

55 A phylogeographic analysis was performed through a Bayesia

56 Asymmetric discrete phylogeographic analysis was used to identify the best-s

57 Here, we combine large-scale phylogeographic analysis with high-throughput phage typi

58 he impact of sampling bias by augmenting the phylogeographic analysis with lineages from undersampled

59 nother coalescent-based method, nested clade phylogeographic analysis, is coherent and also allows th

60 of whole genome sequencing (WGS) to perform phylogeographic analysis, that allows the detection and

61 By means of next-generation sequencing and phylogeographic analysis, the epidemiology and transmiss

62 than a decade, and carried out a time-scaled phylogeographic analysis.

63 lly automated implementation of Nested Clade Phylogeographic Analysis.

64 n uncertain due to the lack of an up-to-date phylogeographic analysis.

65 ic structure, which is often a first step in phylogeographic analysis.

66 imens from 43 localities were determined for phylogeographic and demographic analyses.

67 In this work, we investigated the phylogeographic and demographic composition of sharks ne

68 d nuclear and mitochondrial DNA to infer the phylogeographic and evolutionary history of C. typus, wh

69 acific marginal seas are a primary center of phylogeographic and evolutionary research, because of th

70 Our phylogeographic and genomic characterization of MJNV sug

71 study subjects' demographic information with phylogeographic and molecular clock analyses, we demonst

72 Simulations indicated that phylogeographic and multilocus population-level sampling

73 l reconstructions and use spatially-explicit phylogeographic and phylodynamic approaches to formally

74 Phylogeographic and phylogenetic analyses of the Mexican

75 e genetic data for researchers investigating phylogeographic and phylogenetic patterns of Myotis in t

76 three commonly used formats for multi-locus phylogeographic and population genetics analyses - NEXUS

77 olutionary Significant Units (ESUs) based on phylogeographic and time of divergence information.

78 hs have driven genetic divergence at deeper (phylogeographic) and shallower (landscape genetic) evolu

79 To overcome this, we used a discrete phylogeographic approach coupled to a generalized linear

80 Our phylogeographic approach establishes that SIV is ancient

81 events, using a discrete Bayesian asymmetric phylogeographic approach of diffusion with Markov jump c

82 ross the species range in the US, and used a phylogeographic approach to determine whether recombinat

83 ation in three gene regions is examined in a phylogeographic approach to investigate the domesticatio

84 A phylogeographic approach was used and statistically sign

85 Using a phylogeographic approach, the present work investigates

86 Using this tree and the phylogeographic approach, we derived a new model for the

87 Deploying the statistical strength of phylogeographic approaches and using chromosomal locatio

88 Recent phylogeographic approaches can reconstruct the history o

89 This study demonstrates the utility of phylogeographic approaches for understanding trait diver

90 Landscape phylogeographic approaches use phylogeographic reconstru

91 owever, owing to limitations of the standard phylogeographic approaches used in these studies, this h

92 markers, and combined population genetic and phylogeographic approaches.

93 rs using phylodynamic and spatially-explicit phylogeographic approaches.

94 Most of this phylogeographic architecture is cryptically embedded wit

95 Based on a Caribbean phylogeographic assessment, our findings strengthen the

96 s and Remote Oceania and also, given certain phylogeographic assumptions, by the timing of the first

97 nuclear and mtDNA gene pools results from a phylogeographic background and sex-specific dispersal, w

98 s resolved the classic Gulf-Atlantic coastal phylogeographic break, which was not significant in the

99 our limpet species that display well-defined phylogeographic breaks along the Baja California and Cal

100 k or absent at more recent levels defined by phylogeographic breaks in California.

101 The major phylogeographic changes occurred 35 to 21 ka B.P., befor

102 conservation of genomotypes and linkage with phylogeographic characteristics and predicted the presen

103 hy played a predominant role at all levels - phylogeographic clades are broadly geographically struct

104 reeds (Persian Arabian and Kurdish) into two phylogeographic clades reflecting their geographic origi

105 natural and artificial selection in distinct phylogeographic clades, which shaped their genomes in se

106 tchwork of continental and trans-continental phylogeographic clades.

107 allows determination of genome evolution and phylogeographic clustering and can contribute to clinica

108 The lack of phylogeographic clustering suggests that community intro

109 f, offers ideal opportunities to investigate phylogeographic colonisation scenarios.

110 Mitochondrial and Y-chromosomal phylogeographic comparisons indicate a common Near Easte

111 nt HTLV-II/STLV-II phylogeny exhibits little phylogeographic concordance and indicates low levels of

112 The progression rule is characterized by a phylogeographic concordance between island age and linea

113 The late Pleistocene phylogeographic data also indicate possible colonization

114 Phylogeographic data capture this initial stage of diver

115 We compared existing and new phylogeographic data sets (chloroplast DNA) from 14 wood

116 We utilized an existing phylogeographic dataset for the mitochondrial control re

117 concordance or discordance of phenotypic and phylogeographic differentiation?

118 sequences can however impact the accuracy of phylogeographic dispersal metrics.

119 Based on the phylogeographic distribution of length variants in the e

120 salmon (Salmo salar L.) sampled from a broad phylogeographic distribution.

121 er latitude species had, on average, greater phylogeographic diversity than higher latitude species a

122 significant insights into the epidemiology, phylogeographic diversity, and dynamic circulation and e

123 In this paper, we present phylogeographic, Ecological Niche Modeling, and morphome

124 This study provides phylogeographic evidence of multiple domestications of t

125 ated to over 1.8 million years ago (MYA) but phylogeographic evidence points to an even older age of

126 ld explain the apparent contrast between the phylogeographic features of maternal and paternal lineag

127 d demographic histories within a comparative phylogeographic framework.

128 A Bayesian phylogeographic generalized linear model approach was us

129 generated from both STR and SNP data, though phylogeographic grouping of breeds derived completely or

130 eding colonies clustered into three distinct phylogeographic groupings: Norway-Scotland, Wales-Englan

131 A phylogenetic analysis of mtDNA recovers 5 phylogeographic groups arranged latitudinally along the

132 Although the hypothesis that the 3 phylogeographic groups distributed across California eac

133 The 2 southern phylogeographic groups exhibit concordance between genet

134 go, including the "Temperate" and "Tropical" phylogeographic groups that dominate most samples worldw

135 nicity island and assignment of H. pylori to phylogeographic groups were performed to test for correl

136 breeds/populations, including major indicine phylogeographic groups worldwide.

137 ucturing of the maternal gene pool into four phylogeographic groups.

138 e in-browser animations of biogeographic and phylogeographic histories from annotated phylogenetic in

139 o be highly dynamic according to the various phylogeographic histories of component species.

140 were sequenced to estimate the two species' phylogeographic histories, and for comparison to the mtD

141 these methods to infer human demographic and phylogeographic history are reviewed.

142 The phylogeographic history of the Brazilian HIV-1 subtype C

143 examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Po

144 genetic mechanisms behind this process, the phylogeographic history of the species (inferred from ne

145 erarchy on a temporal and spatial scale, and phylogeographic history should be taken into account whe

146 estimated a suite of metrics characterizing phylogeographic history.

147 o examine population structure and alternate phylogeographic hypotheses for the mountain hare, that i

148 f model uncertainty should be a component of phylogeographic hypothesis tests.

149 e individual travel history data in Bayesian phylogeographic inference and apply it to the early spre

150 given system is a key step in the process of phylogeographic inference and is at least as important a

151 heterogeneous sampling priors for continuous phylogeographic inference is implemented in the open-sou

152 ion for spatially explicit (i.e. continuous) phylogeographic inference of fast-evolving pathogens suc

153 ces are either discarded prior to continuous phylogeographic inference or arbitrarily assigned to the

154 e in favor of using an objective approach to phylogeographic inference that proceeds by calculating t

155 Phylogeographic inference, however, can be particularly

156 ampling can severely confound discrete trait phylogeographic inference.

157 in a two-dimensional space using continuous phylogeographic inference.

158 Phylogeographic inferences about gene flow are strengthe

159 influence of natural selection, many of the phylogeographic inferences derived from mtDNA were robus

160 kely to produce values that lead to spurious phylogeographic inferences.

161 different levels of data filtering influence phylogeographic inferences.

162 c analyses of msp4 sequences did not provide phylogeographic information but did differentiate strain

163 IMPORTANCE Phylogeographic investigation of the Mexico City HIV epi

164 Against expectations, these molecular phylogeographic lineages (representing geological histor

165 They also indicate that the two phylogeographic lineages are at an incipient stage of th

166 ondary contact and hybridization between two phylogeographic lineages in the East China Sea.

167 rmore, the adult standard lengths of the two phylogeographic lineages vary geographically in a manner

168 a from 31 human colorectal specimens enabled phylogeographic mapping of tumor evolution that revealed

169 Phylogeographic methods have been used to characterize p

170 approaches and develop three novel landscape phylogeographic methods that can test the impact of cont

171 ade was characterized using phylodynamic and phylogeographic methods to infer their growth through ti

172 In this study, we use phylogenetic and phylogeographic methods to reconstruct the dispersal pat

173 Phylogeographic methods were used to reconstruct HIV spr

174 merging pathogen is estimated using standard phylogeographic methods.

175 We predict that phylogeographic mitogenomics will become an important to

176 utionary model of DNA mutations, we obtain a phylogeographic model for spatial lineage tracing.

177 Clades were analyzed with a discrete phylogeographic model to evaluate the timing and intensi

178 The results of the SDM, continuous-diffusion phylogeographic model, extensive Bayesian skyline plot a

179 We used the continuous-diffusion phylogeographic model, extensive Bayesian skyline plot s

180 Here, we couple phylogeographic modelling with a landscape connectivity

181 In addition, we show that phylogeographic models incorporating information on the

182 We found strong phylogeographic monophyly and large genetic distances be

183 A likely factor is the phylogeographic movement of peoples from the Old World b

184 linical isolates can discriminate strains by phylogeographic origin and that these profiles are assoc

185 hic gastritis and gastric cancer suggest the phylogeographic origin of an infection with a more virul

186 sis that bacterial factors determined by the phylogeographic origin of H. pylori strains may promote

187 ancer risk segregated strains based on their phylogeographic origin.

188 ential avenue toward a synthetic comparative phylogeographic paradigm that includes addressing some i

189 Here, we examine phylogeographic partitions in the sea against a backdrop

190 ological dynamics and the different types of phylogeographic pattern exhibited by human viruses.

191 The described phylogeographic pattern is considered in relation to lar

192 The phylogeographic pattern of diasporas from several single

193 istory of plants in HHM, we investigated the phylogeographic pattern of Oxyria sinensis, a perennial

194 rtant role of a past geological event in the phylogeographic pattern of this species.

195 rs provide strong evidence that the observed phylogeographic pattern reflects the geographical histor

196 with its human host, resulting in a distinct phylogeographic pattern that can be used to reconstruct

197 erentiation (G(ST(RFLP))=0.700-0.782) with a phylogeographic pattern that indicated extensive histori

198 not have a strong archaeobotanical record or phylogeographic pattern, it is difficult to precisely id

199 rthermore, prophage genomes present a robust phylogeographic pattern, revealing four distinct cluster

200 esent data on Wolbachia infection status and phylogeographic patterning for a widely distributed inse

201 For crop plants, phylogeographic patterns also indicate how seed has been

202 There is great potential for common phylogeographic patterns among remote archipelagos that

203 We find support for idiosyncratic phylogeographic patterns between these wasps, involving

204 often rely on dispersal strategies with weak phylogeographic patterns but strong family transmissions

205 We reconstructed global genome-wide phylogeographic patterns in modern wolves, including pre

206 twentieth century, and discerning fine-scale phylogeographic patterns is thus particularly challengin

207 ithin North America, indicating that current phylogeographic patterns may provide misleading data for

208 ating that this species more closely maps to phylogeographic patterns observed in arctic-boreal rathe

209 Here, we examined the genetic structure and phylogeographic patterns of K. ocellatus along its distr

210 Phylogeographic patterns of some extant plant and verteb

211 We compared phylogeographic patterns of these three Ophiothrix speci

212 We compared phylogeographic patterns of three EBLF constituents in C

213 Phylogeographic patterns suggest that northern South Asi

214 the three species displayed three different phylogeographic patterns that conform to either an in si

215 promoted a tendency to attribute discordant phylogeographic patterns to the idiosyncracies of histor

216 mitochondrial control region, and few clear phylogeographic patterns worldwide.

217 HTLV-I/STLV-I are united through distinct phylogeographic patterns, infection of 20 primate specie

218 None of the species showed meaningful phylogeographic patterns, possibly due to gene-flow betw

219 tial biases in the data and elucidate subtle phylogeographic patterns.

220 different historical scenarios as causes of phylogeographic patterns.

221 oss Africa, from both population genetic and phylogeographic perspectives.

222 useful role in various phyloinformatics and phylogeographic pipelines.

223 was no significant correlation of H. pylori phylogeographic population or carriage of the cagPAI wit

224 We use analyses of phylogeographic population structure across a suite of 1

225 Genetic diversity and phylogeographic population structure in the gammarid amp

226 In this study, we examined the phylogeographic population structure of B. burgdorferi t

227 Finally, the overall phylogeographic profile reveals several clinal patterns

228 Endemic hotspots determined by phylogeographic reconstruction largely predicted the loc

229 Finally, phylogeographic reconstruction of GETV dispersal indicat

230 Phylogeographic reconstruction revealed wide dispersal o

231 Based on phylogenetic placement and a phylogeographic reconstruction, our data support a singl

232 owever, interpreting the complex outcomes of phylogeographic reconstructions requires sophisticated v

233 Finally, we use continuous phylogeographic reconstructions to analyse the dispersal

234 Landscape phylogeographic approaches use phylogeographic reconstructions to investigate the impac

235 By integrating travel data and phylogeographic reconstructions, we find that these two

236 logical data, phylogenies reveal three large phylogeographic regions.

237 We characterized the phylogeographic relationships among 83 isolates of fox r

238 udy highlight the utility of considering the phylogeographic relationships inferred from genome-wide

239 es at regional or local scales, or described phylogeographic relationships within a single type.

240 Phylogeographic research investigates biodiversity at th

241 ns are particularly informative subjects for phylogeographic research on account of their global dist

242 some haplotypes, which provide the necessary phylogeographic resolution, in 1140 males from the Iberi

243 s-sectional study of national and global CPV phylogeographic segregation reveals a substantially more

244 xtension of the PD optimization problem to a phylogeographic setting is NP-hard, although a special c

245 l changes with loss of distinct lineages and phylogeographic shifts, and undergoing domestication.

246 This lack of phylogeographic signal agrees with both ancient and more

247 We also tested for phylogeographic signal and used demographic estimators a

248 We observe little phylogeographic signal in the modern population, indicat

249 ntroductions of USA300 and reconstructed the phylogeographic spread of isolates across neighborhoods.

250 abitats explained little of the variation in phylogeographic structure across the latitudinal gradien

251 We performed statistical tests of phylogeographic structure and applied a recently develop

252 s from five nuclear loci were used to assess phylogeographic structure and nucleotide divergence betw

253 Through tests of phylogeographic structure and spatial linear regression

254 ow, questions have been raised regarding its phylogeographic structure and taxonomic status.

255 type 6 in Asia, characterized by substantial phylogeographic structure and two distinct phases of epi

256 Local transmission was evident in clear phylogeographic structure between the samples from the t

257 ater sequence divergence and revealed strong phylogeographic structure corresponding to major biogeog

258 The inferred phylogeographic structure is shared by numerous taxa dis

259 We examined the phylogeographic structure of 52 populations of the commo

260 To analyze the genetic relatedness and phylogeographic structure of Anopheles darlingi from 19

261 We also investigate the phylogeographic structure of P. faunus and test whether

262 We quantified the European phylogeographic structure of the marine flagellate Oxyrr

263 solution to which lies in understanding the phylogeographic structure of this morphologically simple

264 The inferred phylogeographic structure was affected by admixture with

265 A strong phylogeographic structure was found, with two reciprocal

266 Phylogeographic structure was not observed within Scandi

267 Significant phylogeographic structure was recovered with haplotype c

268 us Bolitoglossa in Costa Rica reveals strong phylogeographic structure within a single species, Bolit

269 nterglacial (LIG) have likely contributed to phylogeographic structure, and the population genetic st

270 orthern and southern populations to evaluate phylogeographic structure.

271 drial data, where haplotypes show a distinct phylogeographic structure.

272 luating hypotheses or may predict discordant phylogeographic structure.

273 s, we first provide a snapshot of multilocus phylogeographic studies across the Carpentarian Barrier,

274 Contrary to a chorus of previous phylogeographic studies and the results of species distr

275 These findings contrast with phylogeographic studies based on mitochondrial DNA (mtDN

276 etection of hybrids in the growing number of phylogeographic studies based on multiple gene markers.

277 In the tropical Indo-Pacific, most phylogeographic studies have focused on the shallow-wate

278 Phylogeographic studies have found evidence of high leve

279 cing thousands of loci for many individuals, phylogeographic studies have increased inferential power

280 Phylogeographic studies have sought to explain the genet

281 Although phylogeographic studies in animals have provided many ne

282 Phylogeographic studies of plants have documented the re

283 road areas of potential habitat, traditional phylogeographic studies provide poor spatial resolution,

284 Additionally, we reassess previous phylogeographic studies within the group.

285 s of the autosomal genome become amenable to phylogeographic studies.

286 importance of accounting for this process in phylogeographic studies.

287 genetic structure have been underexplored in phylogeographic studies.

288 ses of a single-copy nuclear gene in a plant phylogeographic study and yield several important insigh

289 investigated this crop's domestication in a phylogeographic study based on the single-copy nuclear g

290 Here we present a phylogeographic study of the extinct American mastodon (

291 These results are consistent with an earlier phylogeographic study suggesting that weedy sunflowers h

292 Expanding this framework into a phylogeographic study, we incorporate information on his

293 only a small number (two to six) of salient phylogeographic subdivisions (those that stand out again

294 A phylogeographic survey of 227 leprosy biopsies by differ

295 sil records, species distribution models and phylogeographic surveys - in order to characterize the c

296 We applied a variety of statistical phylogeographic techniques to a plethora of viral genome

297 lternatively, the extent of introgression at phylogeographic transitions can provide a more direct te

298 nd highlight the importance of assessing the phylogeographic value of populations for conservation.

299 it is important to quantify and compare the phylogeographic variation in both the host and the paras

300 pattern of divergence and demonstrated that phylogeographic variation occurred through emergence of