コーパス検索結果 (１語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 an underlying functional organization of the plant genome.
2 crobiome by minute genetic variations in the plant genome.
3 ogs were identified in every sequenced green plant genome.
4 for Agrobacterium T-DNA integration into the plant genome.
5 even Arabidopsis, perhaps the best-annotated plant genome.
6 that can use regulatory DNA derived from any plant genome.
7 transcribed and integrated elsewhere in the plant genome.
8 of DNA Pol lambda in the repair of DSBs in a plant genome.
9 thaliana) genome is the most well-annotated plant genome.
10 its tumor-inducing plasmid (T-DNA) into the plant genome.
11 h anniversary of the completion of the first plant genome.
12 ion and expression of bacterial genes in the plant genome.
13 igate Cas9 nuclease specificity in a complex plant genome.
14 ng a global estimate of SM gene content in a plant genome.
15 ding cassettes and repair templates into the plant genome.
16 ogether in biosynthetic gene clusters within plant genomes.
17 onforms to the present Helitron landscape of plant genomes.
18 units of DNA that comprise large portions of plant genomes.
19 redundant gene function in highly duplicated plant genomes.
20 s of polyploidy and epigenetic regulation in plant genomes.
21 rsity through analysis of multiple sequenced plant genomes.
22 t topological domains is a common feature in plant genomes.
23 ms, structural variation is abundant in many plant genomes.
24 non-CG contexts (CHG, CHH) in mammalian and plant genomes.
25 on levels of DNA-binding proteins encoded in plant genomes.
26 ave diversified to hundreds of genes in many plant genomes.
27 nomes are being tackled, including polyploid plant genomes.
28 l of grasses and other difficult-to-annotate plant genomes.
29 are organized in operon-like clusters within plant genomes.
30 Retrotransposons are the main component of plant genomes.
31 potential implications for the evolution of plant genomes.
32 C52-like genes is rather common in sequenced plant genomes.
33 ation and metabolic model reconstruction for plant genomes.
34 estions about the role of DNA methylation in plant genomes.
35 e rearrangements in driving the evolution of plant genomes.
36 ications, the largest proportion thus far in plant genomes.
37 nucleotides among the billions that comprise plant genomes.
38 may represent a window into the past of seed plant genomes.
39 NAC copy number is highly variable in these plant genomes.
40 across mitotic and meiotic cell divisions in plant genomes.
41 e biosynthetic pathways are scattered across plant genomes.
42 annotated genes extracted from 25 sequenced plant genomes.
43 genes, such as caspases, are not present in plant genomes.
44 ural products have recently been reported in plant genomes.
45 ), have made it possible to precisely modify plant genomes.
46 ghts into the evolution of gene structure in plant genomes.
47 about the incidence of ultraconservation in plant genomes.
48 accompanied by the gain and loss of genes in plant genomes.
49 omic and ecological factors influencing seed plant genomes.
50 ng and complex segments of DNA sequence into plant genomes.
51 , such as those encoding useful traits, into plant genomes.
52 sposons make up a smaller proportion of most plant genomes.
53 icant role in the evolution of GC content in plant genomes.
54 logy and paralogy relationships of sequenced plant genomes.
55 ve comparative analysis of several sequenced plant genomes.
56 e on the predicted proteomes of 15 sequenced plant genomes.
57 sequencing approaches for analyses of mutant plant genomes.
58 to play a critical role in the evolution of plant genomes.
59 tion is a prominent and recurrent process in plant genomes.
60 he dynamic nature of the MIRNA complement of plant genomes.
61 onstructing metabolic pathway complements of plant genomes.
62 istent with their elevated retention rate in plant genomes.
63 cation produces massive duplicated blocks in plant genomes.
64 nts often constitute more than 50% of higher plant genomes.
65 ased on the sequences from several divergent plant genomes.
66 Retrotransposons are abundant in higher plant genomes.
67 etic gene clusters in bacterial, fungal, and plant genomes.
68 ods to detect novel evolutionary patterns in plant genomes.
69 and may have been instrumental in reshaping plant genomes.
70 p a large and rapidly evolving proportion of plant genomes.
71 ns similar to those found in large flowering plant genomes.
72 ents (TEs) are extremely abundant in complex plant genomes.
73 inal importance, have now been discovered in plant genomes.
74 of both well established and newly sequenced plant genomes.
75 tes, are the most common components of woody plant genomes.
76 a alone, particularly with highly repetitive plant genomes.
77 types of noncanonical LTRs from 42 out of 50 plant genomes.
78 in patterning recombination frequency within plant genomes.
79 retrotransposons (LTR-RTs) are prevalent in plant genomes.
80 d map open chromatin and TF-binding sites in plant genomes.
81 istinct functions, adds to the complexity of plant genomes.
82 iption factor gene family using 51 completed plant genomes.
83 promoters in sequences of a wide spectrum of plant genomes.
84 ghts into the evolution of gene structure in plant genomes.
85 ordably sequence and assemble gigabase-sized plant genomes.
86 double-domain bulb-type lectins abundant in plant genomes.
87 cause of inbreeding depression across other plant genomes.
88 and report that TRIMs are ubiquitous across plant genomes.
89 evolution of gene innovation and novelty in plant genomes.
90 ention processes of young duplicate genes in plant genomes.
91 ibuted to an abundance of duplicate genes in plant genomes.
93 rice, we confirmed that, like these simpler plant genomes, 24-nt siRNAs whose abundance differs betw
95 phosphorus (P) availability within a complex plant genome and found hotspots of trans-eQTL within the
97 ciens-mediated DNA transfer to plants to the plant genome and its environmentally induced changes.
100 1 putative GLCAT genes distributed across 14 plant genomes and a widely conserved GLCAT catalytic dom
104 on the 10(th) plant genome meeting entitled 'Plant genomes and biotechnology: from genes to networks'
105 s (CNVs) are pervasive in several animal and plant genomes and contribute to shaping genetic diversit
106 Applications of MCScanX to several sequenced plant genomes and gene families are shown as examples.
108 vel computational tool HelitronScanner to 27 plant genomes and have uncovered numerous tandem arrays
109 f the OMA pipeline; (iii) better support for plant genomes and in particular homeologs in the wheat g
110 resistance (R) genes are often clustered in plant genomes and may exhibit heterogeneous rates of evo
111 led distinctive features compared with other plant genomes and may represent a window into the past o
112 t tolerated in animals, but is widespread in plant genomes and may result in extensive genetic redund
113 sing applications of CRISPR-Cpf1 for editing plant genomes and modulating the plant transcriptome.
114 rehensive phylogenomic analyses of sequenced plant genomes and more than 12.6 million new expressed-s
115 atic expansion in all sequenced resurrection plant genomes and no expansion in desiccation-sensitive
116 mall-scale gene duplication and preserved in plant genomes and to determine the underlying driving me
118 a model-based search for CLE domains from 57 plant genomes and used the entire pre-propeptide for com
119 as symmetric and asymmetric methylation in a plant genome, and point to the crucial role of non-CG me
121 ements (TEs) are the major component of most plant genomes, and characterizing their population dynam
123 predictions of Golgi-resident proteins in 18 plant genomes, and have made the preliminary analysis of
125 um dahliae and Plicaturopsis crispa) and two plant genomes (Arabidopsis [Arabidopsis thaliana] and Or
126 nly been performed for three complete higher plant genomes - Arabidopsis (Arabidopsis thaliana), popl
127 , thereby unveiling a highly unusual form of plant genome architecture and offering novel avenues for
128 cise and straightforward methods to edit the plant genome are much needed for functional genomics and
129 xt-generation sequencing, a multitude of new plant genomes are being publicly released, providing uns
132 owever, G protein subunit numbers in diploid plant genomes are greatly reduced as compared with anima
133 hus, it can be hypothesized that some TFs in plant genomes are in the process of becoming pseudogenes
139 and a substantial number of newly available plant genomes as well as various new interactive tools a
140 screens offers new opportunities to analyze plant genomes at deeper resolution and will greatly adva
142 ed to as LSMT-like enzymes, are found in all plant genomes, but methylation of LS Rubisco is not univ
144 ber alterations are widespread in animal and plant genomes, but their immediate impact on gene expres
146 ergent and convergent gene pairs in multiple plant genomes can identify patterns that are shared by m
147 induction of double-strand breaks (DSBs) in plant genomes can lead to increased homologous recombina
151 ity and paralogy, all which are amplified in plant genomes compared to animal genomes due to the larg
153 T for a shared conserved motif) found in all plant genomes, consisting of two clades: one containing
157 ns: (1) that the evolutionary history of all plant genomes contains multiple, cyclical episodes of wh
158 volutionary time of capture, we searched the plant genome database and discovered other closely relat
160 nown ADPR cyclases have been reported in any plant genome database, suggesting either that there is a
161 (POC) is a collaborative effort among model plant genome databases and plant researchers that aims t
163 criptional rate of target genes and vascular plant genomes devote approximately 7% of their coding ca
164 g because of the expansive families found in plant genomes, diverse reactivity and inaccessibility of
165 validated by empirical studies, we built the Plant Genome Duplication Database, a web service providi
167 s the gene space of draft or newly sequenced plant genomes during the assembly or annotation phase.
168 Custom-designed nucleases can enable precise plant genome editing by catalyzing DNA-breakage at speci
169 he utility of Cas9-guide RNA technology as a plant genome editing tool to enhance plant breeding and
170 the relative levels of successful heritable plant genome editing were addressed using simple case st
182 in gene order and orientation are common in plant genomes, even across relatively short evolutionary
183 Polyploidy has played a central role in plant genome evolution and in the formation of new speci
187 ome duplications are a widespread feature of plant genome evolution, having been detected in all flow
188 ionary time, it shapes important features of plant genome evolution, such as the bimodality of G+C co
193 trategies for systematically mining multiple plant genomes for the discovery of new enzymes, pathways
194 urs nearly exclusively on CpG dinucleotides, plants genomes harbor DNA methylation also in other sequ
195 homologous recombination to precisely modify plant genomes has been challenging, due to the lack of e
196 precisely and efficiently edit mammalian and plant genomes has been significantly improved in recent
199 Our results provide the first evidence that plant genomes have an executor R gene family in which me
200 Our results provide the first evidence that plant genomes have an executor R gene family of which me
201 es between unbiased and biased WGDs, and how plant genomes have avoided being overrun with genes enco
204 LA pathway enzyme sequences from 8 available plant genomes identified several genes in the P. falcipa
206 he chloroplast genome is an integral part of plant genomes in a species along with nuclear and mitoch
210 to tailor alterations in genomes, including plant genomes, in a site-specific manner has been greatl
212 We show that compared to other sequenced plant genomes, including a much larger conifer genome, t
213 a growing number (currently 25) of complete plant genomes, including all the land plants and selecte
214 sine methylation can arise stochastically in plant genomes independently of DNA sequence changes.
215 TF families identified in sequenced vascular plant genomes, indicating that evolution of the Solanace
218 tumefaciens transferred DNA (T-DNA) into the plant genome is the last step required for stable plant
221 ng and exploiting evolutionary mechanisms in plant genomes is likely to be a key to crop development
223 acterium-mediated T-DNA integration into the plant genomes is random, which often causes variable tra
225 ansferred DNA (T-DNA) can integrate into the plant genome, it should be targeted to and bind the host
226 tent of natural methylation variation within plant genomes, its effects on phenotypic variation, its
227 e large size and relative complexity of many plant genomes make creation, quality control, and dissem
228 nt and widespread epigenetic modification in plant genomes, mediated by DNA methyltransferases (DMTs)
230 the same pathway, are sometimes observed in plant genomes, most often when the genes specify the syn
231 n particular rendering angiosperm (flowering plant) genomes much less stable than those of animals.
232 better parallelization for large repeat-rich plant genomes, noncoding RNA annotation capabilities, an
234 plasmids, sequences integrated in fungal or plant genomes, or by RNAi generated in planta by a plant
235 ons of the L1 superfamily have been found in plant genomes over recent decades, their diversity, dist
236 A phylogenomic analysis of representative plant genomes places magnoliids as sister to the monocot
238 LTR retrotransposons are major components of plant genomes playing important roles in the evolution o
239 ICS gene in Populus and six other sequenced plant genomes, pointing to the AtICS duplication as a li
242 nomic DNA; however, targeted modification of plant genomes remains challenging due to ineffective met
244 sequencing technologies, assembly of complex plant genomes remains elusive due to polyploidy and high
245 The transcriptional regulatory structure of plant genomes remains poorly defined relative to animals
247 d bioinformatic analyses of host and nonhost plant genomes represent novel ways with which to deciphe
250 nd evidence the gradual assembly of the land plant genome, revealing a phenotypic simplification from
251 d cis-regulatory motifs from three sequenced plant genomes: rice (Oryza sativa), Arabidopsis thaliana
252 substantially since publication of the first plant genome sequence, that of Arabidopsis thaliana, in
253 a), and orthologous genes occur in all other plant genomes sequenced to date, indicating that the ami
258 ology-based methods, we annotate TRIMs in 48 plant genome sequences, spanning land plants to algae.
260 d by the AtGenExpress Consortium and various plant genome sequencing initiatives, have generated impo
263 urred by the continuing decrease in costs of plant genome sequencing, they will allow genome mining t
266 servations fit the model that differences in plant genome sizes are largely explained by transposon i
269 ps for high-quality draft sequences of large plant genomes, such as that of Aegilops tauschii, the wh
270 merous uncharacterized biosynthetic genes in plant genomes suggests that many molecules remain unknow
271 With the increase in numbers of sequenced plant genomes, synteny analysis can provide new insights
272 s tauschii, a large and extremely repetitive plant genome that has resisted previous attempts at asse
273 thylation is a key chromatin modification in plant genomes that is meiotically and mitotically herita
276 -RLK genes from 31 fully sequenced flowering plant genomes, the complex evolutionary dynamics of this
278 complex LIMEs were found in both animal and plant genomes, they differed significantly in their comp
280 More efficient methods are needed to modify plant genomes through homologous recombination, ideally
281 imply that it may influence the evolution of plant genomes through the control of meiotic recombinati
282 tor that requires T-DNA integration into the plant genome to activate a promoterless gusA (uidA) gene
285 ications, we have added more prokaryotic and plant genomes to the phylogenetic gene trees, expanding
286 Compared with TF families from sequenced plant genomes, tobacco has a higher proportion of ERF/AP
290 iana, SDC has important implications for how plant genomes utilize gene silencing to repress endogeno
291 predict the nucleosome landscape of a model plant genome, we used a support vector machine computati
292 veries and, by interrogating newly available plant genomes, we advance the story of stomatal developm
294 mized algorithm for systematically searching plant genomes, we reveal a suite of physically colocaliz
296 database will be regularly updated with new plant genome when available so as to greatly facilitate
297 This limitation is of particular concern for plant genomes, where the rate of genome sequencing is gr
298 ce for the existence of silent epialleles in plant genomes which, once identified, can be targeted fo
299 arms in M. polymorpha like in most vascular plant genomes, which is in contrast with P. patens where
300 identify these accessible regions throughout plant genomes will advance understanding of the relation