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1 single polyadenylation site 229 nt from the poly-A tail.
2 canonical 5' 7-methylguanosine cap and a 3' poly-A tail.
3 capture of information distant from the mRNA poly-A tail.
4 MKIIalpha protein and mRNA by shortening its poly(A) tail.
5 nd cytoplasmic lengthening of the neg-1 mRNA poly(A) tail.
6 n the renal outer medulla appeared to lack a poly(A) tail.
7 precursor, cleaves at that site, and adds a poly(A) tail.
8 leolytic cleavage followed by synthesis of a poly(A) tail.
9 codons or translational readthrough into the poly(A) tail.
10 tly translated in vivo despite the lack of a poly(A) tail.
11 nding that PUMs repress an mRNA that lacks a poly(A) tail.
12 e U-rich internal loop of the ENE and the 3'-poly(A) tail.
13 cription or translation or the status of the poly(A) tail.
14 capping by the addition of a CUCU tag to the poly(A) tail.
15 that hybridizes to and protects the PAN RNA poly(A) tail.
16 ling in ribosomes on translation through the poly(A) tail.
17 pended upon the mRNA's 5' cap but not its 3' poly(A) tail.
18 s end in a conserved stem-loop rather than a poly(A) tail.
19 t recognize the cis-elements and produce the poly(A) tail.
20 ndent on the length of both the mRNA and the poly(A) tail.
21 nterplay between the 5' m(7)G cap and the 3' poly(A) tail.
22 X(L) mRNA was dependent upon the presence of poly(A) tail.
23 PEB, but after polyadenylation, it binds the poly(A) tail.
24 g in the stem-loop but not a reporter with a poly(A) tail.
25 ot distinguish RNAs with or without a cap or poly(A) tail.
26 mRNAs in that they possess a 5' cap and a 3' poly(A) tail.
27 POP2 levels induce a lengthening of tim mRNA poly(A) tail.
28 aves pre-mRNAs at a specific site and adds a poly(A) tail.
29 in histone transcripts which typically lack poly-A tails.
30 ed with maintenance and/or extension of long poly(A) tails.
31 le for mixed tailing and protection of viral poly(A) tails.
32 4 with mRNAs containing critically shortened poly(A) tails.
33 of single-stranded, positive-sense RNAs with poly(A) tails.
34 ust circadian rhythms in the length of their poly(A) tails.
35 these RNAs while stabilizing mRNAs with long poly(A) tails.
36 iduals were shown to have severely truncated poly(A) tails.
37 uncated AU-rich mRNAs lacking the 3' UTR and poly(A) tails.
38 nto structures previously thought to be long poly(A) tails.
39 is known to trim hTR precursors by removing poly(A) tails.
40 A and mRNA; and the Distal Site, which binds poly(A) tails.
41 -seq that directly sequences the full-length poly(A) tails.
42 ter transcripts lack splicing signatures and poly(A) tails.
43 pore complexes and the length of transcript poly(A) tails.
44 ly(A) tails while other mRNAs to have longer poly(A) tails.
45 bundance of the mRNA subpopulation with long poly(A) tails (a rough proxy for mRNA translatability).
46 processes, it is important to identify these poly(A) tails accurately in transcriptome sequencing dat
48 of a targeted gene, subsequently inhibiting poly(A) tail addition and leading to degradation of that
49 on in most eukaryotes, involves cleavage and poly(A) tail addition at the 3' end of mRNAs at the poly
50 of U1 snRNP to the target pre-mRNA inhibits poly(A)-tail addition, causing degradation of that RNA s
51 ansport and translation, suggesting that the poly(A)-tail also provides a basis for eukaryotes to eff
52 cells accomplish similar decoupling through poly(A) tail alterations to ensure that dormant transcri
54 ells, the oocyte transcriptome has a shorter poly(A) tail and a higher relative proportion of termina
55 down cells, p53 mRNA has an abnormally short poly(A) tail and a reduced translational efficiency, res
56 on of an mRNA is strongly impacted by its 3' poly(A) tail and associated poly(A)-binding proteins (PA
57 nteraction of topoisomerase IIalpha with the poly(A) tail and G/U-rich 3'-untranslated region (3'-UTR
58 nome of TV contains 6,714 nucleotides plus a poly(A) tail and is organized into three open reading fr
59 FLuc production rate that was dependent on a poly(A) tail and poly(A)-binding protein, but was indepe
60 tramolecular RNA clamp, sequestering the PAN poly(A) tail and preventing the initiation of RNA decay.
61 s between polysomes and P-bodies and how the poly(A) tail and the associated poly(A) binding protein
62 proximity of the termination codon to the 3' poly(A) tail and the poly(A) RNA-binding protein, PAB1,
63 nctionally replaced interactions between the poly(A) tail and the poly(A)-binding protein (PABP) to a
64 As: efficiently translated mRNAs have longer poly(A) tails and are shorter, more stable, and more eff
65 can therefore interact with mRNAs via their poly(A) tails and caps, as well as through sequence-spec
66 cells into two fractions with short and long poly(A) tails and compared them by microarray analysis.
67 ocol that queries the junctions of 3'UTR and poly(A) tails and confidently maps the poly(A) tags to t
68 form enhances translation and elongates the poly(A) tails and imparts its translational state to the
70 either GLD-2 or RNP-8 resulted in shortened poly(A) tails and lowered abundance of four target mRNAs
71 length, while GC-rich Alus only in their 3' poly(A) tails and middle A-stretches, with differences d
72 ource tool for finding the precise border of poly(A) tails and other homopolymers in raw mRNA sequenc
73 n that highly expressed genes can have short poly(A) tails and the elucidation of the seemingly contr
74 levels of CDK11 increased the length of HIV poly(A) tails and the stability of mature viral transcri
75 majority of these products contained intact poly(A) tails and were bound by the poly(A) binding prot
76 n RNA during cDNA synthesis by aiming at the poly(A)+-tail and (2) introduced a pre-amplification of
77 rphic Alus, TypeTE identifies the hallmarks (poly-A tail and target site duplication) and orientation
78 ion, independent of 7-methylguanylate cap or poly(A) tail, and prompts mRNA redistribution to silenci
79 inding protein N1 (PABPN1) and PABPC1 at the poly(A) tail, and, provided biogenesis involves pre-mRNA
82 a mice have mild histologic defects, shorter poly(A) tails, and evidence of mitochondrial damage.
83 peroxidase (HRP)-biotin/streptavidin to the poly(A) tails, and the oxidation reaction of tetramethyl
84 ith much less starting material, the lack of poly(A)-tails, and the fact that the messages can be pol
85 he first study to reveal that TATA boxes and poly (A) tails are direct targets for BBR in its regulat
86 esent study demonstrates that TATA boxes and poly (A) tails are the first and second primary targets
92 new insights into how transcripts that lack poly(A) tails are stabilized and regulated and suggest t
94 rity of both forms requires the mRNA cap and poly(A) tail, as well as eIF4E, eIF4G, Pab1 and eIF3, an
95 paving the way for a better understanding of poly(A) tail-associated regulation of gene expression.
97 transcripts have a 5' monophosphate, lack a poly(A) tail at the 3' end, and contain no introns; thes
99 timulated hypothalamus shortens the AVP mRNA poly(A) tail at the same time as reducing transcript abu
100 ions of 3'-untranslated region (UTR) and the poly(A) tails at the transcriptome level, a comprehensiv
102 tic initiation factor 4E (eIF4E), eIF4G, and poly(A) tail-binding protein (PABP) that circularizes mR
103 cal structure that could not only shield the poly(A) tail but also serve as a scaffold for the assemb
104 ctor 4E (eIF4E) at the cap and PABPC1 at the poly(A) tail, but that lacks detectable EJCs and PABPN1.
105 ranscribed by Pol II and acquire 5' caps and poly(A) tails, but only mRNAs are translated into protei
107 obe DNAs, extension reaction of polyadenine (poly(A)) tails by poly(A) polymerase, binding of a terna
108 We demonstrate that mRNA in yeast lacking a poly(A) tail can be destabilized by introduction of a pr
110 end in a stem-loop structure instead of the poly(A) tail characteristic of all other mature mRNAs.
111 Many plant viruses without 5' caps or 3' poly(A) tails contain 3' proximal, cap-independent trans
113 w dwarf virus RNA, lacking a 5' cap and a 3' poly(A) tail, contains a cap-independent translation ele
114 ion in myoblasts led to a shortening of mRNA poly(A) tails, demonstrating the cellular function of PA
115 ing proteins directly recruit PABP, in a non-poly(A) tail-dependent manner, to stimulate the small su
119 tion motif of HuD, the domain that binds the poly(A) tail, eliminated the branch-specific expression
129 ware of focus exclusively on the trimming of poly(A) tails, failing to provide the detailed informati
130 in part through the removal of PAB1 from the poly(A) tail following its self-association into multime
131 nterestingly, REF/Aly appears to protect the poly(A) tail from deadenylation, and REF/Aly-stabilized
135 w dwarf virus mRNA, which lacks both cap and poly(A) tail, has a translation element (3'-BTE) in its
136 pair DNA hairpin attached to a 50-nucleotide poly-A tail (HP-A(50)) is threaded into an alphaHL chann
137 polyadenylation or retain a reasonably long poly(A) tail if they are to return to the translating po
139 n may be relevant, as the positioning of the poly(A) tail in mRNAs influences the length of the 3'-un
140 earch for the enzymes responsible for adding poly(A) tails in Chlamydomonas and Arabidopsis organelle
143 ll as the vast majority of species that lack poly-A tails in their mRNAs (including all archea and ba
145 t is a polyU sequence that can interact with poly(A) tails, inhibit the association of poly(A)-bindin
146 e eukaryotic initiation factor (eIF) 4G/PABP/poly(A) tail interaction is achieved instead through the
149 e primers are removed by exonuclease I and a poly(A) tail is added to the 3' end of the first-strand
151 sequence motifs that signal the addition of poly(A) tails is essential to improved genome annotation
153 s tend to possess shorter poly(A)-tails, the poly(A)-tail is not required for the codon-mediated mRNA
154 s are polyadenylated in the nucleus, and the poly(A)-tail is required for efficient mRNA export and t
159 r the rhythmic mRNAs by their peak phases in poly(A) tail length and abundance of the long-tailed sub
160 of previously reported correlations between poly(A) tail length and expression level, and poly(A) ta
161 ar PAPS isoforms control de novo synthesized poly(A) tail length and hence expression of specific sub
162 strongest contributor to the rhythmicity in poly(A) tail length and the rhythmicity in the abundance
163 a function for Hnrnpa1 in the regulation of poly(A) tail length and translation of maternal mRNAs th
165 n of pgc is concurrent with extension of its poly(A) tail length but appears largely independent of t
166 NA show growth defects as well as defects in poly(A) tail length but do not accumulate poly(A) RNA in
168 a suggest that NPM1 has an important role in poly(A) tail length determination and may help network 3
169 st, highly reproducible and minor changes in poly(A) tail length distribution are easily detected.
171 assays have enabled a more detailed look at poly(A) tail length genome-wide throughout many developm
172 cial for gene expression and perturbation of poly(A) tail length has been linked to a human neurodege
173 help of these advances, our understanding of poly(A) tail length has evolved over the past 5 years wi
174 etic data indicate that dNab2 restricts bulk poly(A) tail length in vivo, suggesting that this functi
176 mportantly, we found that the rhythmicity in poly(A) tail length is closely correlated with rhythmic
178 also needed during oogenesis to regulate the poly(A) tail length of dmos during oocyte maturation and
179 ial action of RNA binding proteins modulates poly(A) tail length of maternal mRNAs, leading to asymme
180 A)denylome" analysis, a method that measures poly(A) tail length of transcripts in a global manner, a
181 se transcripts do not exhibit rhythmicity in poly(A) tail length or steady-state mRNA level, despite
182 basis for understanding its function in both poly(A) tail length regulation and in the compaction of
183 ly(A) RNA binding protein, Nab2, facilitates poly(A) tail length regulation together with targeting t
186 d translation, and enzymes that regulate the poly(A) tail length significantly impact protein profile
188 f genes were found to exhibit rhythmicity in poly(A) tail length, and the poly(A) rhythms are strongl
189 We describe strategies for assessing 3' poly(A) tail length, base modifications and transcript h
191 define the function of PABPN1 in control of poly(A) tail length, little is known about the role of P
201 During egg activation, relative changes in poly(A)-tail length, and thus translational efficiency,
205 RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater understanding
206 miRNAs have almost no effect on steady-state poly(A)-tail lengths of their targets in mouse fibroblas
207 , we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte matura
210 nuclear-retained noncoding RNA with a short poly(A) tail-like moiety and a small tRNA-like cytoplasm
211 cay is generally initiated by removal of the poly(A) tail mediated by the Ccr4-Caf1-Not complex.
212 ng, and therefore reduced canonical (cap-and-poly(A)-tail-mediated) translation, remains undiscovered
213 ve levels of A17-PABPN1 and detected shorter poly(A) tails, modest changes in poly(A) signal (PAS) us
214 A)-binding proteins (PABs) uniformly bind to poly(A)-tailed mRNAs, regulating their stability and tra
216 these results indicate that, in addition to poly(A) tails, Nab2 can also recognize sequence motifs e
217 These results establish that neither the poly(A) tail nor PAB1 is required in yeast for discrimin
218 space between the termination codon and the poly(A) tail nor the binding of steady-state, largely hy
221 tic cells, the shortening and removal of the poly(A) tail of cytoplasmic mRNA by deadenylase enzymes
223 al protein, many copies of which bind to the poly(A) tail of eukaryotic mRNAs to promote translation
224 GLD-2-GLD-3 acts by extending the short poly(A) tail of germ-line-specific mRNAs, switching them
225 ng a reverse primer that hybridizes with the poly(A) tail of HIV-1 mRNAs, anchored by conserved viral
226 roximately 25% of the expressed genes have a poly(A) tail of less than 30 residues in a significant p
230 d this is accompanied by extension of the 3' poly(A) tail of the AVP mRNA, and the up-regulation of t
232 mitochondrial mRNAs, although the length of poly(A) tails of mitochondrial transcripts were unaffect
235 transferase reactions, leads to synthesis of poly(A) tails on the 3' end of VSV mRNAs that are 10- or
237 eir 3' untranslated regions (UTRs) have long poly(A) tails; once the RNAs are spliced and transported
238 s the enzyme responsible for the addition of poly(A) tails onto RNA molecules in Escherichia coli.
239 , including mRNAs, for degradation by adding poly(A) tails onto their 3' ends, these data indicate th
240 The longest NQO1 transcript has increased poly(A) tail (PA-tail) length that accounts for the diff
241 mination in vitro However, after binding the poly(A) tail, PABP became insensitive to suppression by
242 ssenger RNA function is controlled by the 3' poly(A) tail (PAT) and poly(A)-binding protein (PABP).
247 largely to those obtained from conventional poly-A tail purification methods, indicating both enumer
248 e show that KPAF5 stabilizes KPAF4 to enable poly(A) tail recognition, which likely leads to mRNA sta
251 a two-color assay to simultaneously monitor poly(A) tail removal from different RNAs, we demonstrate
253 encountered, translation continues into the poly(A) tail, resulting in C-terminal appendage of a pol
254 are uncoupled from transcription and exhibit poly(A) tail rhythms even though the steady-state mRNA l
256 ondrial ribosome profiling and mitochondrial poly(A)-tail RNA sequencing (MPAT-Seq) assay, we identif
259 tent with this, Pum-Brat repression leads to poly(A) tail shortening and mRNA degradation in tissue c
265 yadenylation, which indicated that selective poly(A)-tail shortening primarily specifies these change
266 slation on transcripts containing or lacking poly(A) tails, suggesting that cleavage of PABP and IRES
271 re is a >30-fold increase of PAP I-dependent poly(A) tails that are </=10 nt in length coupled with a
272 translationally repressed mRNAs contain long poly(A) tails that are dramatically shortened during the
274 destabilizing codons tend to possess shorter poly(A)-tails, the poly(A)-tail is not required for the
275 (NOT)," which catalyzes the removal of mRNA poly-(A) tails, the first obligatory step in mRNA decay.
277 t decapping is preceded by shortening of the poly(A) tail to a length that can no longer support tran
279 elements are linked to the propensity of the poly(A) tail to engage in double-stranded structures.
280 mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process cri
284 ic acid (LNA)-containing oligo(dT) probes to poly(A) tails to maximize RNA capture selectivity and ef
286 ter trimming, amplification primer trimming, poly-A tail trimming, vector screening and low quality r
288 polymerase, and the mRNA transcribed, with a poly(A) tail, was efficiently utilized in an in vitro tr
289 where the majority of the PAP I synthesized poly(A) tails were after the Rho-independent transcripti
290 regulated by RNAi in Chlamydomonas, very few poly(A) tails were detected in chloroplasts for the atpB
291 the number or sequence of mitochondrial mRNA poly(A) tails, where unexpectedly we found, in addition
293 cleases for pre-tRNA substrates adding short poly(A) tails, which not only modulate the stability of
294 EMT/metastasis-related mRNAs to have shorter poly(A) tails while other mRNAs to have longer poly(A) t
295 Orb2 represses translation and removes mRNA poly(A) tails, while the oligomeric form enhances transl
296 turely translated: a transcript with a short poly(A) tail will remain untranslated, whereas elongatin
297 on, we complexed synthetic mRNA containing a poly A tail with PABPs in a stoichiometric manner and st
298 nstrate that our tool can precisely identify poly(A) tails with near perfect accuracy at the speed re
299 onfirm that cordycepin reduces the length of poly(A) tails, with some mRNAs being much more sensitive