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1 th hFip1 binding sites in CPSF30 can support polyadenylation.
2 ng decisions and Chtop regulates alternative polyadenylation.
3 ncluding intron splicing and 3' cleavage and polyadenylation.
4 modifications such as capping, splicing, and polyadenylation.
5 isoforms in vivo is generated by alternative polyadenylation.
6 lar mechanisms required for polo alternative polyadenylation.
7 itive and negative regulators of alternative polyadenylation.
8 g RNAs (lncRNAs), undergo trans-splicing and polyadenylation.
9 through alternative splicing and alternative polyadenylation.
10 in mediating PAS-dependent RNA cleavage and polyadenylation.
11 RNA binding proteins, or during alternative polyadenylation.
12 ed from the unc-44 locus through alternative polyadenylation.
13 onses relative to its interactions with mRNA polyadenylation.
14 oding RNAs, which undergo trans-splicing and polyadenylation.
15 uencing alternative splicing and alternative polyadenylation.
16 ession, potentially regulated by alternative polyadenylation.
17 ivity that can repress proximal cleavage and polyadenylation.
18 identify prominent alternative splicing and polyadenylation abnormalities in infant CDM muscle, and,
19 he proteins share metal ion-dependent RNA 3' polyadenylation activities that are greatly stimulated b
20 iral capsid gene via its role in alternative polyadenylation and alternative splicing of the single M
25 ions involving RNase R treatment followed by Polyadenylation and poly(A)+ RNA Depletion (RPAD), which
30 between alternative splicing and alternative polyadenylation, and it is their concerted actions that
31 nal processes such as splicing, cleavage and polyadenylation, and the editing, localization, stabilit
33 lmost 70% of human genes undergo alternative polyadenylation (APA) and generate mRNA transcripts with
34 ethylation and mRNA alternative cleavage and polyadenylation (APA) are both prevalent in cancer and h
39 Alternative splicing (AS) and alternative polyadenylation (APA) generate diverse transcripts in ma
43 , p63beta, and p63delta, whereas alternative polyadenylation (APA) in coding sequence creates two mor
45 e impact of genetic variation on alternative polyadenylation (APA) in the nuclear and total mRNA frac
54 (PASs), leading to expression of alternative polyadenylation (APA) isoforms with distinct functions.
56 A regulation and neural-specific alternative polyadenylation (APA) of a single locus controls complex
61 multiple polyadenylation sites, alternative polyadenylation (APA) produces three major PolH transcri
63 (PAT) sequencing approach, mRNA alternative polyadenylation (APA) profiles after auxin treatment wer
64 action landscape and changed the alternative polyadenylation (APA) profiles and/or transcript levels
66 hypothesis that cannabis targets alternative polyadenylation (APA) sites within hypothalamic transcri
67 l, a comprehensive comparison of alternative polyadenylation (APA) was performed to understand the ro
68 transcription initiation (ATI), alternative polyadenylation (APA), alternative splicing (AS), and fu
69 especially intron retention) and alternative polyadenylation (APA), display circadian rhythmicity res
70 al 3' UTR isoforms, generated by alternative polyadenylation (APA), is a broad and conserved feature
71 udes comprehensive assessment of alternative polyadenylation (APA), which is subject to broad tissue-
80 sms by which completion of mRNA splicing and polyadenylation are recognized, together with how they a
81 we observed no general shift in alternative polyadenylation associated with PE, the EO-PE and LO-PE
83 ernative RNA processing, by both suppressing polyadenylation at an internal site, termed the proximal
85 riptional read-through by promoting proximal polyadenylation at many sites in the Arabidopsis genome(
86 fect in eukaryotes is probably inappropriate polyadenylation at near-cognate sites within the coding
89 lice sites and poly(A) signals were mutated, polyadenylation became the preferred mode of OXT6 proces
91 FLL2 was required to promote this proximal polyadenylation, but not the binding of FCA to target RN
93 tiple sites at which RNA 3' end cleavage and polyadenylation can occur, enabling the expression of di
94 P II) and in the recruitment of the cleavage/polyadenylation complex, both of which could cause the o
97 mutants display defects in polo alternative polyadenylation concomitant with a striking reduction in
98 y player in this process is the cleavage and polyadenylation (CPA) factor PCF11, which directly binds
99 metalloproteinase 3 (TIMP3) and cytoplasmic polyadenylation element binding protein 3 (CPEB3) were i
100 prion-like RNA-binding protein, cytoplasmic polyadenylation element-binding (CPEB) protein, is a put
104 instead via binding of CPEB4 to cytoplasmic polyadenylation elements within the 3'-untranslated regi
105 hort PolH transcript produced by alternative polyadenylation escapes repression by miR-619 and confer
106 in this manner inhibits downstream cleavage/polyadenylation events through a splicing-independent me
108 per se is lethal in the absence of cleavage-polyadenylation factor (CPF) subunits Ppn1 and Swd22 and
109 ho1 de-repression by IP8 depends on cleavage-polyadenylation factor (CPF) subunits, termination facto
112 -containing RNA binding protein, kinetoplast polyadenylation factor 3 (KPAF3), and demonstrate its ro
113 th morpholino technology or silencing of the polyadenylation factor CPSF1 caused a splice switch that
114 c post-mortem controls were analysed for the polyadenylation factor CPSF4 and inflammatory markers.
116 of this intronic PAS depends on the nuclear polyadenylation factor SYDN-1, which inhibits the RNA po
124 tone cleavage complex (HCC), and a subset of polyadenylation factors including the endonuclease CPSF7
125 independently of THO, Sub2, or cleavage and polyadenylation factors, and enhances mRNA export via TR
126 ges induced nuclear localisation of NFkB and polyadenylation factors, effects inhibited by cordycepin
127 ey recruit the endonuclease CPSF73 and other polyadenylation factors, forming catalytically active ho
128 t-translational modifications of splicing or polyadenylation factors, leading to splicing events that
129 iated via THO and Sub2 of TREX, cleavage and polyadenylation factors, or Sus1 (that regulates mRNA ex
133 re-mRNA alternative splicing and alternative polyadenylation have been implicated to play important r
134 These results indicate that HDA6 regulates polyadenylation in a histone deacetylation-dependent man
136 dy and probe principles of mRNA cleavage and polyadenylation in C. elegans The worm 3' UTRome v2 repr
138 pmentally regulated alternative splicing and polyadenylation in congenital myotonic dystrophy (CDM).
139 t that poly(A) polymerase I (PAP I)-mediated polyadenylation in Escherichia coli is highly prevalent
140 leosomes have been reported to regulate mRNA polyadenylation in humans, the role of HDACs in regulati
142 evious work suggested a role for alternative polyadenylation in target selection, but this proved not
143 cle kinase Polo is controlled by alternative polyadenylation in the 3' untranslated region (3'UTR), w
146 ex and factors involved in mRNA splicing and polyadenylation, including an association of PAF1-C with
147 ly(A) polymerases that regulates cytoplasmic polyadenylation-induced translation, but its target mRNA
148 s was investigated, and the potential of the polyadenylation inhibitor cordycepin (3' deoxyadenosine)
149 tion in macrophages and by the fact that the polyadenylation inhibitor cordycepin attenuates pain and
152 To assess the full panoply of mRNAs whose polyadenylation is controlled by GLD4, we performed an u
153 gene expression at the level of cytoplasmic polyadenylation is important for many biological phenome
154 data indicate that FIP1-mediated alternative polyadenylation is important for plant development and s
157 ing poly(A) polymerase from the cleavage and polyadenylation machinery could signal completion of mRN
159 II termination via depletion of the cleavage/polyadenylation machinery, circular RNA levels were simi
161 miR-379 and ABCC2 However, alternative mRNA polyadenylation may result in expression of 3'-untransla
163 s transcription elongation, termination, and polyadenylation, must also be considered as potential me
165 at Pax3 levels are controlled by alternative polyadenylation of its transcript, which is regulated by
166 These data point to a role for alternative polyadenylation of LDLR mRNA as a potent regulator of LD
171 We show that Nudt21 directs differential polyadenylation of over 1,500 transcripts in cells acqui
175 ilure of 5'-end maturation elicits increased polyadenylation of some pre-tRNAs by poly(A) polymerase
176 The lack of PDE12 results in a spurious polyadenylation of the 3' ends of the mitochondrial (mt-
178 WDR33), thus linking activities for proximal polyadenylation of the antisense transcripts to FLD/LD/S
180 scriptome-wide analysis revealed alternative polyadenylation of thousands of genes, most of which res
181 motes pluripotency by regulating alternative polyadenylation of transcripts encoding pluripotency fac
182 diated TATase activity is involved in the 3' polyadenylation of viral plus-strand RNAs.IMPORTANCE Pre
184 e via epigenetic modifications, and altering polyadenylation (pA) sites at which precursor mRNA is cl
185 ion at an internal site, termed the proximal polyadenylation (pA)p site, and by facilitating splicing
186 ge at its internal site, termed the proximal polyadenylation (pA)p site, to allow accumulation of RNA
189 ion defects, inducing premature cleavage and polyadenylation (PCPA) and loss of expression of long (>
190 on-terminating premature 3' end cleavage and polyadenylation (PCPA) from cryptic polyadenylation sign
194 Using a poly(A)-tag sequencing approach, polyadenylation (poly(A)) site profiles were investigate
195 cleavage and polyadenylation at alternative polyadenylation (poly(A)) sites, alternative terminal ex
196 s have generated comprehensive catalogues of polyadenylation (poly(A)) sites; their analysis using in
200 c pre-mRNAs must undergo 3'-end cleavage and polyadenylation prior to their export from the nucleus.
201 nerated by spliced leader trans-splicing and polyadenylation, processes that are functionally linked.
204 cting signals necessary for the cleavage and polyadenylation reaction and splicing of the adjacent up
205 esource to investigate the mRNA cleavage and polyadenylation reaction, 3'-UTR biology, and miRNA targ
207 such as alternative splicing and alternative polyadenylation result in greater transcript and protein
208 age of nascent transcripts, generally during polyadenylation, resulting in degradation of the residua
210 s of dsDNA, ssRNA and dsRNA viral markers of polyadenylation-selected RNA sequences from microbial co
214 ranscription complexes pass the cleavage and polyadenylation signal (CPS) and increases upon PP1 depl
216 vidence that evolutionary divergence in core polyadenylation signal (PAS) and downstream sequence ele
217 his process is the recognition of the AAUAAA polyadenylation signal (PAS), and the molecular mechanis
218 hexanucleotide AAUAAA motif in the pre-mRNA polyadenylation signal by the cleavage and polyadenylati
220 e development of new therapies targeting the polyadenylation signal in AR intron 3 as a strategy to p
222 pulohumeral muscular dystrophy-specific DUX4 polyadenylation signal is surprisingly inefficient, and
223 mutations near the CEP135(mini) alternative polyadenylation signal reduces the CEP135(full:mini) rat
224 3' UTR, which contains a conserved, precise polyadenylation signal, a robust transient transfection
227 mRNA isoforms due to usage of more proximal polyadenylation signals (PASs) in introns and last exons
229 rentially localized upstream of noncanonical polyadenylation signals in Drosophila melanogaster genes
230 apply APARENT to forward engineer functional polyadenylation signals with precisely defined cleavage
231 ered sites that are closely spaced and share polyadenylation signals, as these are likely the result
232 riptome-wide gene expression and alternative polyadenylation signatures associated with early-onset P
233 Here, we identify a key role for an intronic polyadenylation site (PAS) in temporal- and tissue-speci
235 ion or loss of CDK12/CDK13 triggers intronic polyadenylation site cleavage that suppresses the expres
237 matin and transcripts at a critical proximal polyadenylation site of RPP7, where they suppress proxim
239 molecule long-read sequencing technology and polyadenylation site sequencing (PAS-seq) to re-annotate
240 EF-RNA interactions upon RNA cleavage at the polyadenylation site triggers disassembly of the elongat
241 we compared genome-wide DNA methylation and polyadenylation site usage between DNA methylation-compe
242 hosphorylated CPSF6 largely supported normal polyadenylation site usage, a significant number of mRNA
243 Loss of CFIm function results in proximal polyadenylation site usage, shortening mRNA 3' untransla
246 thmin-2 pre-messenger RNA, uncover a cryptic polyadenylation site whose utilization produces a trunca
247 intron immediately upstream of the internal polyadenylation site, (pA)p, and that generation of thes
248 end of the gene, thereby using the canonical polyadenylation site, and associate to polyribosomes.
249 serted into intron 35 exposes an alternative polyadenylation site, resulting in a truncated Pkhd1 tra
251 ed the first comprehensive analysis of viral polyadenylation sites (pA sites) using our previously re
253 tematically mapped and compared cleavage and polyadenylation sites (PASs) in two yeast species, S. ce
255 ally facilitate usage of distal cleavage and polyadenylation sites (PASs), leading to long 3' UTR iso
258 inding protein that promotes use of proximal polyadenylation sites in genes targeted by IBM2, includi
259 mice, this mutation was sufficient to alter polyadenylation sites in over 1300 genes critical for br
261 cupancy markedly increased near cleavage and polyadenylation sites in xrn1Delta cells, whereas its ac
264 3'-UTR of NRT1.1 showed that the pattern of polyadenylation sites was altered in the cpsf30 mutant.
265 relates with an increased number of intronic polyadenylation sites, a feature especially prominent am
266 e found that due to the presence of multiple polyadenylation sites, alternative polyadenylation (APA)
267 hin protein-coding sequences, acquisition of polyadenylation sites, structural rearrangements, and in
268 f RNA polymerase II, and terminates at their polyadenylation sites, thereby ensuring global co-direct
273 F100 is a core component of the cleavage and polyadenylation specificity factor (CPSF) complex for 3'
275 is 3'-end processing, including cleavage and polyadenylation specificity factor (CPSF) in mammals.
276 rocessing machinery consists of cleavage and polyadenylation specificity factor (CPSF), cleavage stim
278 ng to the 30-kDa subunit of the cleavage and polyadenylation specificity factor (CPSF30), a cellular
281 nt whose mutation mapped to the Cleavage and Polyadenylation Specificity Factor 30 gene (CPSF30-L).
282 te that CPSF4 (cellular protein cleavage and polyadenylation specificity factor 4) independently and
283 ian (CFIm) complex, composed of cleavage and polyadenylation specificity factor 5 (CPSF5) and serine/
285 n myxovirus resistance B (MxB), cleavage and polyadenylation specificity factor 6 (CPSF6), and cyclop
286 interactions with host protein cleavage and polyadenylation specificity factor 6 (CPSF6), complete r
287 f the capsid proteins with host cleavage and polyadenylation specificity factor 6 (CPSF6), which is a
288 EAH-box helicase 15 (DHX15) and cleavage and polyadenylation specificity factor 6 (CPSF6; also known
289 ncodes a homologue of mammalian cleavage and polyadenylation specificity factor subunit 3 (CPSF-73 or
290 , such as cleavage factor I and cleavage and polyadenylation specificity factor, as well as by other
291 he 73-kilodalton subunit of the cleavage and polyadenylation specificity factor, poised for cleavage.
295 factors required for specific and efficient polyadenylation, to help coordinate mRNA 3'-end processi
296 r of translation control through alternative polyadenylation usage required to fine-tune the timing o
298 mination of mRNAs is coupled to cleavage and polyadenylation while noncoding transcripts are terminat
299 ular mechanisms involved in polo alternative polyadenylation, with remarkable physiological functions