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1 mapped movements of divalent cations during preinitiation.
2 assembly and the regulation of transcription preinitiation.
3 tion factors eIF1, eIF1A and eIF3 in the 40S preinitiation complex (40S.eIF1.eIF1A.eIF3.Met-tRNA(i).e
4 lity, the hydrolysis of GTP bound to the 40S preinitiation complex (40S.Met-tRNA(i).eIF2.GTP), promot
5 g eukaryotic translation initiation, the 43S preinitiation complex (43S PIC), consisting of the 40S r
7 omain (eIF5-CTD) directly links eIF4G to the preinitiation complex (PIC) and enhances mRNA binding.
8 of melted DNA separately associated with the preinitiation complex (PIC) and the adjacent paused comp
9 anslation initiation factor eIF1A stimulates preinitiation complex (PIC) assembly and scanning, but t
10 ription factor TFIIB plays a central role in preinitiation complex (PIC) assembly and the recruitment
11 SIR-mediated silencing is permissive to both preinitiation complex (PIC) assembly and transcription i
12 e GAL1 UAS, and facilitates formation of the preinitiation complex (PIC) assembly at the GAL1 promote
13 he steps leading to chromatin remodeling and preinitiation complex (PIC) assembly differ significantl
16 (PRC1) inhibits activated RNA polymerase II preinitiation complex (PIC) assembly using immobilized H
17 FIIF are both required for RNA polymerase II preinitiation complex (PIC) assembly, but their roles at
18 he structure of transcription factors (TFs), Preinitiation Complex (PIC) assembly, RNA polymerase II
23 ies of highly regulated steps: assembly of a preinitiation complex (PIC) at the promoter nucleated by
24 s of highly regulated steps: assembly of the preinitiation complex (PIC) at the promoter, initiation,
25 vating protein complex, form a transcription preinitiation complex (PIC) at the spliced leader (SL) R
26 olving mRNA secondary structures that impede preinitiation complex (PIC) attachment to mRNA or scanni
28 defective for interaction with polymerase II preinitiation complex (PIC) components and other regulat
29 The resulting complete pol II transcription preinitiation complex (PIC) contained equimolar amounts
31 steps in transcription initiation including preinitiation complex (PIC) formation and start site sel
32 ans is regulated in several steps, including preinitiation complex (PIC) formation, initiation, Pol I
34 s p53-dependent transcription by stimulating preinitiation complex (PIC) formation; (2) H3K4me3, thro
35 scription commences with the assembly of the Preinitiation Complex (PIC) from a plethora of proteins
36 ecognition triggers rearrangement of the 48S preinitiation complex (PIC) from an open conformation to
37 work implicated eIF5 in rearrangement of the preinitiation complex (PIC) from an open, scanning confo
39 complexes remove the -1 nucleosome after the preinitiation complex (PIC) has partially assembled, but
40 ferences of the key components of eukaryotic preinitiation complex (PIC) have been recently measured
41 don in an mRNA by the eukaryotic translation preinitiation complex (PIC) is essential for proper gene
43 1), eIF1A, eIF3, and eIF5, and the resulting preinitiation complex (PIC) joins the 5' end of mRNA pre
45 that a reduced affinity of eIF3j for the 43S preinitiation complex (PIC) occurs on eIF4F-dependent mR
48 oactivators are required for assembly of the preinitiation complex (PIC) or for subsequent steps in t
50 ires the assembly at the promoter of a large preinitiation complex (PIC) that includes RNA polymerase
51 inately recruit RNA polymerase II and form a preinitiation complex (PIC) to activate MyoD transcripti
52 ces cerevisiae that allows conversion of the preinitiation complex (PIC) to bona fide initially trans
53 as been implicated in attachment of the 43 S preinitiation complex (PIC) to mRNAs and scanning to the
54 ve reconstituted mRNA recruitment to the 43S preinitiation complex (PIC) using purified S. cerevisiae
55 e of a 33-protein, 1.5-MDa RNA polymerase II preinitiation complex (PIC) was determined by cryo-EM an
56 nucleates the assembly of the transcription preinitiation complex (PIC), and although TBP can bind p
57 x and its role, along with components of the preinitiation complex (PIC), in histone eviction at indu
59 formation and function of the promoter-bound preinitiation complex (PIC), which consists of RNA polym
64 ption factors and promoter DNA in a 'closed' preinitiation complex (PIC); unwinding of about 15 base
65 tiation of DNA synthesis from each origin, a preinitiation complex (pre-IC) containing Cdc45 and othe
66 and a core component of the DNA replication preinitiation complex (pre-IC), and that the TICRR-TopBP
67 scription by blocking the recruitment of the preinitiation complex (RNA polymerase II and TFIIB) to t
68 oter recruitment of poised RNA polymerase II preinitiation complex (RNAPII PIC), which enhances futur
69 ruses have been determined to encode a viral preinitiation complex (vPIC) that mediates late gene exp
70 s that a structural rearrangement in the 43S preinitiation complex activates it to become fully compe
73 c1Delta mutation affects the assembly of the preinitiation complex after osmotic shock, it does not a
74 kinetic dissection of the transition from a preinitiation complex after start codon recognition to t
77 f mRNA and stimulates recruitment of the 43S preinitiation complex and subsequent scanning to the ini
78 dge about the architecture of the KSHV viral preinitiation complex and suggests that it functions as
79 anding the architecture of the mammalian 43S preinitiation complex and the complex of eIF3, 40S, and
80 4me3 that leads to assembly of transcription preinitiation complex and transcriptional activation.
81 , for Mediator-dependent assembly of a basal preinitiation complex and, more important, identify a st
82 core promoter of RNR3 is sufficient to drive preinitiation complex assembly and activate transcriptio
83 0S binding of eIF3 and is needed for optimal preinitiation complex assembly and AUG recognition in vi
85 ontrol global gene expression in eukaryotes: preinitiation complex assembly and polymerase pausing.
86 re, a TFIIB-related protein is implicated in preinitiation complex assembly and postpolymerase recrui
87 y by the activator Gcn4p but is dependent on preinitiation complex assembly and Ser5 carboxy-terminal
88 n factor 4F (eIF4F) complex and promotes 48S preinitiation complex assembly and start-site scanning o
89 oter chromatin remodeling from transcription preinitiation complex assembly and suggest the existence
90 sis coupled with native gel electrophoresis, preinitiation complex assembly assays, and translation i
91 8p and H3-K4 methylation are dispensable for preinitiation complex assembly at the core promoters of
93 inct mechanisms for ribosome recruitment and preinitiation complex assembly between the two processes
94 can be used to learn how different modes of preinitiation complex assembly impact transcriptional ac
96 required for activators to stimulate Pol II preinitiation complex assembly on an associated promoter
97 with the MED23 Mediator subunit, stimulating preinitiation complex assembly on early viral promoters
98 om the TAF1-TFIID complex upon completion of preinitiation complex assembly, allowing transcription t
100 t Mdm30p is dispensable for formation of the preinitiation complex assembly, association of elongatin
101 inhibiting an essential function of TFIIF in preinitiation complex assembly, but also that Mediator c
111 Consistent with this finding, Mediator and preinitiation complex association with SAGA-dependent pr
112 e present a cryoEM reconstruction of a yeast preinitiation complex at 4.0 A resolution with initiator
113 nally, we examined the assembly of the viral preinitiation complex at late gene promoters and found t
114 the cap-binding complex, eIF4F, anchors the preinitiation complex at the 5' end of mRNAs and regulat
115 on network is essential for formation of the preinitiation complex at the core promoter to initiate t
117 olymerase II, nucleating the assembly of the preinitiation complex at the transcription start site.
118 ation of most eukaryotic mRNAs occurs when a preinitiation complex binds to the 5' cap, scans the mRN
119 s bind immediately downstream of the Pol III preinitiation complex but are not required for Pol III r
120 ire the preloading of RNA polymerase II or a preinitiation complex but instead depends upon the Gcn5
121 nal initiation is the recruitment of the 43S preinitiation complex by the cap-binding complex [eukary
122 of eIF1 was identified, interfaces to other preinitiation complex components and their relevance to
123 caffold for the dynamic associations of many preinitiation complex components, including the growth-r
124 et out to fine-map a small viral replication preinitiation complex composed of two protein dimers bou
125 e of mediating assembly of the transcription preinitiation complex containing RNA polymerase II.
126 iation in Archaea requires the assembly of a preinitiation complex containing the TATA- box binding p
127 gly, the initiation codon recognition by 43S preinitiation complex during EXT2 translation is suppres
128 IID (TFIID), which nucleates assembly of the preinitiation complex for transcription by RNA polymeras
129 reagents, their effect on transcription and preinitiation complex formation and discuss their potent
130 ter escape are linked to stronger effects on preinitiation complex formation and transcription, sugge
133 associated factors (TAFs), is essential for preinitiation complex formation at ribosomal RNA gene pr
134 rved cis elements, the TFIID complex directs preinitiation complex formation at specific sites in cor
135 e context-dependent Saccharomyces cerevisiae preinitiation complex formation at the HIS4 promoter rec
136 egative regulation of transcription, correct preinitiation complex formation in basal and activated t
138 opose a model of stochastic enhanceosome and preinitiation complex formation that incorporates transc
139 anning sequences downstream from the site of preinitiation complex formation, a process that involves
140 ARG1 is independent of the TATA element and preinitiation complex formation, whereas efficient recru
146 We also determined the structure of the 48S preinitiation complex formed by Nsp1, 40S, and the crick
149 SNF affects recruitment of components of the preinitiation complex in a promoter-specific manner to m
151 onal changes that mark the transition of 30S preinitiation complex into elongation competent 70S comp
152 n by BRCA1 is that the ubiquitination of the preinitiation complex is not targeting proteins for degr
154 lating the assembly of the 48S translational preinitiation complex mediated by the p27 IRES element.
155 d the AdMLP suggests that Rep78/68 alter the preinitiation complex of RNA polymerase II transcription
156 ation of mda-7/IL-24 mRNA, activation of the preinitiation complex of the translational machinery in
158 cription by interfering with assembly of the preinitiation complex or by blocking transcription initi
159 regulate later stages in the assembly of the preinitiation complex or facilitate multiple rounds of p
160 he involvement of MED25 for fully functional preinitiation complex recruitment and transcriptional ou
161 r transcription in requiring a virus-encoded preinitiation complex that binds to TATT motifs unique t
162 nd eIF1A promote an open, scanning-competent preinitiation complex that closes upon start codon recog
163 rred, and the activators recruited a partial preinitiation complex that included RNA polymerase II.
164 slation initiation in eukaryotes occurs in a preinitiation complex that includes small ribosomal subu
165 dues of eIF1 disrupts a critical link to the preinitiation complex that suppresses eIF1 release befor
166 information for the papillomavirus E1E2-ori preinitiation complex that would otherwise have been har
167 .eIF2.GTP) and the subsequent binding of the preinitiation complex to eIF4F bound at the 5'-cap struc
169 is a central component of the transcription preinitiation complex, and its occupancy at a promoter i
170 binding to Adr1 at promoters that contain a preinitiation complex, demonstrating that Bmh-mediated i
172 initiation involves the assembly of the 48S preinitiation complex, followed by joining of the 60S ri
173 neral transcription factors that make up the preinitiation complex, including Pol II, but there was n
175 roteins, but not the conventional autophagic preinitiation complex, or adaptor protein-3 (AP-3).
177 s impair the integrity of scanning-competent preinitiation complex, thereby altering the 40 S subunit
178 e the interaction with the components of the preinitiation complex, thereby inhibiting its function a
179 of EIF1AX, a component of the translational preinitiation complex, were markedly enriched in PDTCs a
180 lymerase II (Pol II) with the promoter-bound preinitiation complex, whereas Brf1 and Brf2 are involve
181 ly bind to the 40S subunit, yielding the 43S preinitiation complex, which is ready to attach to messe
218 ge number of promoters assemble into partial preinitiation complexes (partial PICs), containing TFIIA
219 if32 CTD that impair mRNA recruitment by 43S preinitiation complexes (PICs) and confer phenotypes ind
221 o determine how Mot1 affects the assembly of preinitiation complexes (PICs) at Mot1-controlled promot
222 manner suggesting incomplete assembly of 48S preinitiation complexes (PICs) at upstream AUG codons in
223 bly of RNA polymerase (Pol) II transcription preinitiation complexes (PICs) have been well establishe
224 eomic analysis of RNA polymerase II (RNApII) preinitiation complexes (PICs) identified Sub1 and the r
226 The accumulation of stalled translation preinitiation complexes (PICs) mediates the condensation
227 (MuDPIT) and immunoblot analyses of purified preinitiation complexes (PICs) revealed the recruitment
228 n by facilitating the recruitment of RNAP II preinitiation complexes (PICs) to the promoter regions o
229 apid, TATA box-dependent assembly of RNAP II preinitiation complexes (PICs), but permits few rounds o
230 rprisingly, when Gdown1 is added to complete preinitiation complexes (PICs), it does not inhibit init
231 mes can lead to queuing/stacking of scanning preinitiation complexes (PICs), preferentially enhancing
232 isolated that affect either the assembly of preinitiation complexes (PICs), scanning for AUG, or bot
233 ociation and P(i) release from reconstituted preinitiation complexes (PICs), whereas a hyperaccuracy
238 rt site (TSS) selection reflect diversity of preinitiation complexes and can impact on post-transcrip
239 3j/HCR1 remains associated with the scanning preinitiation complexes and does not dissociate from the
240 -a is a bona fide component of polymerase II preinitiation complexes and investigate its role in tran
242 ble binding of at least some mRNAs to native preinitiation complexes and that eIF4G has a rate-limiti
243 t the recruitment, assembly, and progress of preinitiation complexes and the ribosome under many phys
244 a model whereby BRCA1 stabilizes productive preinitiation complexes and thus stimulates transcriptio
246 hich is thought to stabilize properly formed preinitiation complexes at the correct start codon.
247 CDK8 module are specifically recruited into preinitiation complexes at the TR target gene type I dei
248 like unexpressed genes without transcription-preinitiation complexes at their promoters, expressed ge
249 rug influences the assembly and stability of preinitiation complexes by targeting the interaction bet
252 nslation initiation factor (eIF)3 enable 43S preinitiation complexes containing eIF3 and eIF2-GTP-Met
253 omoters, expressed genes or genes containing preinitiation complexes exhibit characteristic nucleosom
255 ng the formation of stable RNA polymerase II preinitiation complexes leading to transcription initiat
256 erentially affects the assembly of ribosomal preinitiation complexes on different cellular and viral
257 PSEA, DmSNAPc establishes RNA polymerase II preinitiation complexes on U1 to U5 promoters but RNA po
260 se TBP derivatives in isolated transcription preinitiation complexes or in living cells reveals physi
262 -depth characterization of RNA polymerase II preinitiation complexes remains an important and challen
263 oplasmic aggregates of stalled translational preinitiation complexes that accumulate during stress.
264 s granules (SGs) contain stalled translation preinitiation complexes that are assembled into discrete
265 /eIF2/GTP binds to 40S subunits yielding 43S preinitiation complexes that attach to the 5'-terminal r
266 n factors and Pol II to assemble on DNA into preinitiation complexes that can begin RNA synthesis upo
268 on codon selection and enables mammalian 43S preinitiation complexes to discriminate against AUG codo
269 with the presence of stalled 48S translation preinitiation complexes to persist throughout infection.
270 template assays in which activator-recruited preinitiation complexes were allowed to undergo one cycl
271 4 acidic activation domains in transcription preinitiation complexes were identified by site-specific
272 Initiation involves direct attachment of 43S preinitiation complexes within a short window at or imme
273 that nucleates the assembly of transcription preinitiation complexes, also independently interacts wi
275 use the proteasome to target transcriptional preinitiation complexes, thus minimizing transcriptional
276 specifically removes eIF4G1 from translation preinitiation complexes, thus removing eIF4G1 from the t
277 ted to stimulate attachment of 43S ribosomal preinitiation complexes, which then scan to the initiati
293 Daughter cells received equal shares of preinitiation factors, which bind the RNA polymerase I p
298 These structures refine the pathway from preinitiation through initiation to elongation for the R