ライフサイエンスコーパス: publicly available

1 areas on 10 individual brains (which we make publicly available).

2 it age-specific analyses should be routinely publicly available.

3 n be iteratively improved as new data become publicly available.

4 Summary data of the GWASs are freely and publicly available.

5 ode, new dataset, and pre-trained models are publicly available.

6 -disaster insurance data, which is often not publicly available.

7 their de novo assemblies were recently made publicly available.

8 The network and the analysis software are publicly available.

9 and we are able to make haplotype-level data publicly available.

10 data and annotations used in this study are publicly available.

11 er-expanding heterogeneous datasets that are publicly available.

12 code-base, modified dataset and results are publicly available.

13 hed models because the exact models were not publicly available.

14 have been solved but have not yet been made publicly available.

15 total of 50 samples of which mitogenomes are publicly available.

16 to promote further innovation, we also make publicly available a large dataset of 10,030 annotated e

17 s the low temporal and spatial resolution of publicly available administrative data such as census da

18 elated or unrelated) and uses for comparison publicly available AFs estimated in a group of healthy s

19 enomics) has more than doubled the number of publicly available analysed datasets held within the res

20 affected by bioinformatics processing using publicly available and custom tools and databases and th

21 Publicly available and designed for hospital operations

22 Here, we develop PRISMOID, a novel publicly available and free 3D structure database for a

23 ze circadian transcriptome datasets that are publicly available and identify the critical component(s

24 l genes in bladder cancer tumor samples from publicly available and MD Anderson Cancer Center cohorts

25 The multi-species maps have been made publicly available as a resource to the research communi

26 We make nnU-Net publicly available as an out-of-the-box tool, rendering

27 MEDEA is publicly available as part of our Glossary-GENRE suite f

28 ointsum" implementing the proposed method is publicly available at github.

29 methods (MAPER and FreeSurfer), using three publicly available atlas databases (Hammers_mith, Desika

30 ine bacteria by probing a collection of 1239 publicly available bacterial genomes, representing cultu

31 Here we present MemSTATS, a publicly available benchmark set of both quaternary- and

32 in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services.

33 e literature and is of the largest among the publicly available biomedical concept embeddings to date

34 annotated bird genomes in addition to other publicly available bird genome data which serve as a val

35 CellPhoneDB v.2.0 is publicly available, both as code and as a user-friendly

36 This study uses data from the publicly available Centers for Medicare & Medicaid Servi

37 Our publicly available checklist includes 13,634 species (68

38 e Published Kinase Inhibitor Set (PKIS) is a publicly-available chemogenomic library distributed to m

39 Based on publicly available ChIP-seq and chromatin accessibility

40 In this study, we aggregated publicly available ChIP-seq data from 469 human DAPs ass

41 ubset of enriched data are processed against publicly available ChIP-Seq data using Model-based Analy

42 formation on TAD boundaries is borrowed from publicly available chromosome conformation capturing ('H

43 le Citrobacter spp. from UPMC and with other publicly available CNSC genomes.

44 nt cohort coupled with in silico analysis of publicly available cohorts, high expression of USP11 was

45 nvironment by analyzing the transcriptome of publicly available cohorts, TCGA and METABRIC.

46 omprising 27 genes and patient age, in three publicly available cohorts, then independently validated

47 We argue that a solid, evolving, publicly available, community-controlled foundation for

48 The area deprivation index is a publicly available composite score constructed from soci

49 n on zebrafish pkd2 mutant embryos using two publicly available compound libraries (Spectrum, PKIS) t

50 e evaluated the performance of all currently publicly available computational T cell epitope predicti

51 yet the current state and standardization of publicly available computational tools for these data is

52 istributions of background signals from many publicly available control ChIP-seq datasets.

53 -impact functional variants missing from the publicly available cosmopolitan panels could be clinical

54 lly, intensives where local utility data are publicly available could test the spatial proxies used i

55 y-based methods and set the foundation for a publicly available county yield prediction effort that c

56 correlated at the mRNA level across multiple publicly available CRPC datasets.

57 coinfected patient care in LMICs using both publicly available data and data from Village Health Wor

58 highlight the potential use of large-scale, publicly available data and the value of international c

59 of our single-cell RNA sequencing data with publicly available data from genome-wide association stu

60 Using publicly available data from the Allen Brain Institute,

61 We used publicly available data from the Oral Health Module, las

62 ic associations with gallstone disease using publicly available data from the UK Biobank and two larg

63 h the analysis of fine-grained, abundant and publicly available data of cryptomarkets.

64 We calibrated our model using publicly available data on demographics; HIV prevalence

65 newly generated microarray data on IHs with publicly available data on toxicological transcriptomics

66 This cross-sectional study used the recently publicly available data on US COVID-19 deaths with repor

67 rs that could be in principle estimated from publicly available data once the evolution of the Lighti

68 estimates are finally compared to some other publicly available data regarding anthropogenic [Formula

69 icity hospital network and ChestX-ray14 is a publicly available data set with 112 120 images.

70 Consistent with our bioreactor data, publicly available data sets and patient stool samples s

71 This method was evaluated using 2 publicly available data sets for children <5 y old: BRIN

72 Publicly available data sets from amplicon sequencing of

73 We evaluate our approach with four publicly available data sets from both time-of-flight (T

74 Results from reanalyses of multiple publicly available data sets of human and mouse heart fa

75 -source energy system optimization model and publicly available data sets to examine future electrici

76 Meta-analysis of publicly available data showed increased BOP1 expression

77 nt and public health that included a list of publicly available data sources regarding environmental

78 lity metric coined "occupancy rate" based on publicly available data to assess differences in postope

79 elective pressure due to stewardship, we use publicly available data to estimate the effect of change

80 ment staff performing wealth screening using publicly available data to identify patients capable of

81 nd comparison between user-provided data and publicly available data, as all samples can be processed

82 ous published reports and compared them with publicly available data, living epilepsy controls and et

83 Because our methods rely on publicly available data, they could be employed for nati

84 Using publicly available data, we test whether short-paired en

85 e also performed network analyses relying on publicly available data, which supported our key finding

86 utional data; only 16 were validated against publicly available data.

87 nt costs for new therapeutic agents based on publicly available data.

88 Using a publicly-available data set, we show that BRAID more acc

89 Analysis from a publicly available database showed SNX27 to be overexpre

90 VDJbase is a publicly available database that offers easy searching o

91 lyzed; allele frequencies were compared with publicly available database.

92 sources of variation, gene annotation using publicly available databases and gene sets, and data vis

93 ces of these proteins have been deposited in publicly available databases and repositories.

94 Our analysis of publicly available databases of protein complexes indica

95 ensive next generation sequencing has filled publicly available databases such as the Sequence Read A

96 ted gene signatures were used to interrogate publicly available databases to identify upstream signal

97 We trained the proposed model using huge publicly available databases, (CBIS-DDSM, BCDR-01, and I

98 By integrating information from publicly available databases, we curated 883 FDA approve

99 oup and their interacting CSC genes from the publicly available databases.

100 dence on these issues by leveraging a unique publicly available dataset consisting of roughly 30,000

101 A publicly available dataset containing k-space data as we

102 This publicly available dataset includes the cortical activit

103 A publicly available dataset of Zika virus-infected neural

104 ding and excluding APOE genotypes in a large publicly available dataset with extensive phenotypic dat

105 s of more than 850 patients with cancer from publicly available datasets and showed that it was able

106 performed extensive numerical simulations on publicly available datasets from diverse domains demonst

107 Large publicly available datasets from well-characterized case

108 sures using extensive simulation studies and publicly available datasets in cancer genomics.

109 The deep neural network was trained on two publicly available datasets including 297,541 images of

110 from healthy individuals were obtained from publicly available datasets matched for country.

111 Experimental tests involving several publicly available datasets of patients afflicted with p

112 bridization of GBM specimens and analysis of publicly available datasets revealed that MALAT1 express

113 To corroborate this view, we used publicly available datasets to define a transcriptomic b

114 -validation methods are implemented on three publicly available datasets to evaluate the performance

115 With publicly available datasets, we designed and trained var

116 s with three example websites generated from publicly available datasets-human neuronal tissue, mouse

117 We demonstrate SpatialCPie on several publicly available datasets.

118 These results were further validated using publicly available datasets.

119 published WSH scores based on simulated and publicly available datasets.

120 f SASH1 in non-small cell lung cancers using publicly available datasets.

121 sing select examples from the literature and publicly-available datasets.

122 el the US epidemic at the state-level, using publicly available death data within a Bayesian hierarch

123 2 medical centers to elicit their views on a publicly available decision aid for sacubitril/valsartan

124 ic data for children 0-59 mo of age from all publicly available Demographic and Health Surveys (DHS)

125 The data generated in this study are publicly available, enabling the replication and re-anal

126 Integrative analysis of publicly available eQTL, DNaseI, and chromatin conformat

127 We analyzed publicly available esophageal CD3(+) T-cell single-cell

128 pression Atlas Tool (PEATmoss), that unifies publicly available expression data for P. patens and pro

129 d the same computational pipeline to analyze publicly available expression data from postmortem brain

130 nteractome study performed in our lab, (3) a publicly available extracellular vesicles dataset, and (

131 he Ethereum Blockchain, which is the largest publicly available financial data source that has a gran

132 show the results from using TarPan Viewer on publicly available follicular lymphoma, breast cancer, a

133 s at isoform-level and make this information publicly available for all the curated drugs.

134 The R script for our new utility is publicly available for download from the web.

135 The software, including documentation, are publicly available for free download from Github.

136 The hierarchical atlas and code will be made publicly available for future investigators.

137 At the moment, an AVROS pisifera genome is publicly available for oil palm.

138 These data will be made publicly available for replication and future investigat

139 and the code required to run the rules, are publicly available for researchers who wish to annotate

140 Metabolic datasets used in this study are publicly available from the cited sources.

141 is illustrated by phylogenetic analysis and publicly available gene expression data for each gene fa

142 nts with ATB across a large, diverse list of publicly available gene expression datasets, and evaluat

143 Using large publicly available genome-wide association studies (GWAS

144 sh distances) between African MAGs and other publicly available genomes from the rumen.

145 cess to over 250 000 uniformly annotated and publicly available genomes with curated metadata.

146 Using publicly available genomes, 4465 high diversity genomic

147 We finally compared transcriptomic data to publicly available genomic datasets for Symbiodiniaceae

148 Geometric Network (MEGENA), were applied on publicly available glioma, control brain and stem cell g

149 with GOogle data) that efficiently combines publicly available Google search data at different resol

150 Retrospective analysis with publicly available Google trends data from January 1, 20

151 Here, we use publicly available Google Trends data to evaluate whethe

152 use of Bayesian colocalization analysis, of publicly available GWAS summary statistics with the cyto

153 nts a wind damage model that is built around publicly available hazard, exposure, and vulnerability d

154 Publicly available high-dimensional methylation data are

155 Publicly available high-quality corn yield prediction ca

156 risk, by performing integrative analysis on publicly available, high-throughput gene expression data

157 d that 59% of the metadata collected are not publicly available, highlighting that the availability o

158 Scientists can import their own or publicly available HTS data into LabxDB seq to manage th

159 (BSF) model of "frequent hitters" using 872 publicly available HTS data sets.

160 Using data from two publicly available human genomic diversity resources, we

161 g sequencing reads and aligned them with the publicly available human, chimpanzee, and gorilla Y asse

162 While there are >2 million publicly-available human microarray gene-expression prof

163 iopsies from a patient with cCD and analyzed publicly available immune cell proteomics data to charac

164 data and methods of this work have been made publicly available in an open-source model.

165 The GH16 subfamily classification is publicly available in the CAZy database.

166 We applied our approach to publicly available in vitro data of treatment with diffe

167 In silico analyses of of publicly available in vitro data showed a decrease of gl

168 iles of brain tissues were extracted from 14 publicly available independent datasets, and classified

169 propose a complex network framework based on publicly available indicators to extract important insig

170 Publicly available information about opiate overdoses, c

171 nvestigators' (PIs) data were extracted from publicly available information from their institutions'

172 Based on publicly available information on genotypes from six mai

173 he associations of density measures from the publicly available Laboratory for Individualized Breast

174 These existent software tools often rely on publicly available lipid databases, such as LIPID MAPS,

175 e records about 10 million peaks called from publicly available m(6)A-seq and MeRIP-seq data using ou

176 It does so by assembling a wealth of publicly available macro- and individual-level data, exp

177 atewide groundwater geochemical database and publicly available maps of soil and aquifer physicochemi

178 esults that agree with consensus output on a publicly-available match algorithm cross-validation data

179 We used the publicly available Medicaid Drug Utilization and Current

180 d the simulated metabolic profiles, are also publicly available (Messa et al., 2020).

181 building on the rapidly increasing amount of publicly available metagenome data.

182 Here, by probing thousands of publicly available metagenomes for homologues of methyl-

183 Screening of publicly available metagenomes revealed that Sulfurimona

184 enomes closely related to Yaravirus in 8,535 publicly available metagenomes spanning diverse habitats

185 6,262 identified from a systematic search of publicly available metagenomes, metatranscriptomes and m

186 Using publicly available metagenomes, we evaluated library siz

187 Grabseqs streamlines access to publicly available metagenomic data by providing a singl

188 Furthermore, it describes the most common publicly available MG repositories and highlights their

189 e identified using co-expression analysis of publicly available microarray data (n = 303 profiles) me

190 By analyzing two publicly available microarray data sets, we found that N

191 Metagenome analysis coupled with publicly available microarray data suggested a mechanism

192 ides pre-computed antiSMASH results for many publicly available microbial genomes and allows for adva

193 t in a phylogenetic tree consisting of 3,240 publicly available microbial genomes.

194 use molecular dynamics simulations based on publicly available micrococcal nuclease sequencing data

195 We tested our approach on publicly available miRNA expression datasets.

196 g sequence similarity to a large database of publicly available mitochondrial genomes.

197 We use publicly available monthly data from January 2011 throug

198 We independently analyzed 3 publicly available multiethnic DNA methylation data sets

199 Here, we present our analyses of publicly available multiOMIC data sets generated using m

200 wealth across ~ 20,000 African villages from publicly-available multispectral satellite imagery.

201 G and the general compressor pigz on several publicly available nanopore datasets.

202 ive study examined CNN performance using the publicly available National Institutes of Health chest r

203 We show that a publicly available neural network previously trained in

204 and gestational age in secondary analyses of publicly available Obstetrics and Periodontal Therapy (O

205 It estimates cell type proportions using publicly available, often cross-platform, reference data

206 rse high-quality structure-activity datasets publicly available on ChEMBL.

207 types, we provide a user's guide to the five publicly available online data exploration and visualiza

208 emented in C program TS, which is freely and publicly available online.

209 ormula: see text] Additionally, we provide a publicly-available, online tool to aid researchers in an

210 utative cis-regulatory elements (CREs) using publicly available open chromatin data for the heart, ao

211 NASQAR offers a collection of custom and publicly available open-source web applications that mak

212 f results had been submitted and were either publicly available, or undergoing quality control review

213 >20,000 genes with a multicohort analysis of publicly available PAH RNA expression data to identify c

214 o date, this is the largest and most diverse publicly available panel of maize NILs to be phenotypica

215 Results are presented using publicly available Parkinson's Progression Markers Initi

216 In the present study, we have made use of publicly available patient expression arrays and have de

217 n an additional cohort of mCRPC patients and publicly available PCa cohorts.

218 le extracellular vesicles dataset, and (4) a publicly available phosphoproteomics dataset.

219 Data were processed using an automated and publicly available pipeline.

220 hydraulic trait distribution maps provide a publicly available platform to fundamentally advance und

221 cial databases, 4 industry news outlets, and publicly available press releases from PE firms or platf

222 sistance-causing genomic modifications using publicly available primary HCC datasets (1,019 samples).

223 eme Gradient Boosting) was compared to three publicly available programs (Vaxign, VaxiJen, and Antige

224 simulation study and via analyses of several publicly available protein expression, microarray gene e

225 predictions based on the output of BIOWIN, a publicly available quantitative structure-biodegradation

226 Given our publicly available R code and data, others can complete

227 n from co-activated CREs, similar cells, and publicly available regulome data to substantially increa

228 regions by existing genomic annotations and publicly available regulomic datasets.

229 the global condition of crop growth based on publicly available remote sensing and meteorological dat

230 he eICU Collaborative Research Database is a publicly available repository of granular data from more

231 tside of their approved label, and creates a publicly available repository of knowledge for future de

232 ased on R Markdown or Jupyter Notebook, with publicly available, reproducible codes and narratives to

233 As demonstrated by these analyses, this publicly available resource has the potential to serve a

234 CDD) enters its 20th year of operations as a publicly available resource, CDD curation staff continue

235 Online search of publicly available resources conducted from February 16,

236 We describe publicly available resources of molecular, morphological

237 ciation study findings across IMDs and other publicly available resources.

238 We demonstrate this toolkit's performance on publicly available ribosome profiling data by rapidly id

239 s is to the best of our knowledge, the first publicly available RLM prediction model built using high

240 igated the same microglia-related markers in publicly available RNA expression data from postmortem b

241 Publicly available RNA-seq data is routinely used for re

242 rsity, we have applied the pipeline to a few publicly available RNAseq datasets downloaded from GEO i

243 Using publicly available samples, we show that the tissue spec

244 Here, we analyse 208 publicly available SARS-CoV-2 genome sequences collected

245 Using publicly available scATAC-seq data, we find patterns tha

246 The publication of preprints, publicly available scientific manuscripts posted on dedi

247 We demonstrate using publicly available scRNA-seq datasets and simulated expr

248 erent dimensionality reduction methods on 30 publicly available scRNA-seq datasets that cover a range

249 performance of the proposed method on eight publicly available scRNA-seq datasets with known cell ty

250 mmune cell subtypes is corroborated in other publicly available scRNA-seq datasets.

251 We used 179 publicly available sea star transcriptomes to complement

252 uencing technology, resulting in a wealth of publicly available sequence data but also a gap between

253 We analysed 3651 publicly available sequences for the presence of nucleic

254 A substantial proportion of publicly available sequences is geo-referenced at broad

255 nces were compared with one another and with publicly available sequences.

256 We curated the publicly available sequencing data for 3,393 bacterial i

257 Advanced publicly available sequencing data from large population

258 sequently detected zebrafish picornavirus in publicly available sequencing data from seemingly asympt

259 Here, we re-analyze a publicly available single-cell RNA sequencing (scRNA-seq

260 Here, analyses of publicly available single-cell RNA-Seq sequencing (scRNA

261 Counts are reported by a publicly available software, OsBp_detect.

262 images from other laboratories against other publicly available software.

263 o infection), using our software modules and publicly-available software repository.

264 cephalus (iNPH) and 30 normal volumes from a publicly available source.

265 6 RNA-sequencing (RNA-Seq) samples from five publicly available sources representing a range of prost

266 well as vaccination and population data from publicly available sources, to project costs for routine

267 We also retrieved publicly available soybean transcriptome data that were

268 status epilepticus treatment by analyzing 33 publicly available statewide EMS protocols.

269 However, publicly available, streamlined, and reproducible pipeli

270 diversity of major classes of BGCs in 1,110 publicly available Streptomyces genomes.

271 ly dependent on the information available in publicly available, structured databases, which suffer f

272 We illustrate MR-BMA by analysing publicly-available summarized data on metabolites to pri

273 he transmission dynamics of SARS-CoV-2 using publicly available surveillance data and (2) infer estim

274 cle has earned an Open Data Badge for making publicly available the digitally-shareable data necessar

275 All analysis summary results are publicly available through a web-based visual server, an

276 large number of DAP motif and ChIP-seq data publicly available to explore how DAP associations contr

277 We make the data and code used publicly available to facilitate further development of

278 This illustrates how these SEM images, publicly available to the research community, provide an

279 It provides a publicly available tool for all IRES researchers, and ca

280 onal population-based setting and provides a publicly available tool to foster additional cancer surv

281 Many publicly available tools able to perform GWAS have been

282 rpreting genomic sequence variants, identify publicly available tools and resources for genomic test

283 customized data analysis workflow that uses publicly-available tools.

284 Publicly available toxicological studies on wastewaters

285 organisms, we identified candidate genes in publicly available transcriptome data sets obtained with

286 Publicly available transcriptomes and DNA methylomes of

287 We reviewed publicly available transcripts of all DODAC and ODP meet

288 Drugs@FDA, clinicaltrials.gov, MEDLINE, and publicly available U.S. Food and Drug Administration (FD

289 ariant classifications for HCM in ClinVar, a publicly available variant resource.

290 A comprehensive, publicly available web tool of interactive illustrations

291 A free, publicly-available Web calculator is provided to help in

292 Publicly available whole meta-genome sequencing data fro

293 These data, made publicly available, will inform the biology of body fat

294 It is publicly available with an MIT license at github.com/opt

295 Since 311 requests are publicly available with high spatial and temporal resolu

296 hat data from biological samples will become publicly available with standardized metadata.

297 ssifiers and evaluation metrics will be made publicly available with the intention of facilitating gr

298 ral network architectures and two well-known publicly available X-ray image datasets used to diagnose

299 Here, we present an analysis of all publicly available Xenopus RNA sequencing (RNA-seq) data

300 Application to publicly available yeast and human data has showed that