ライフサイエンスコーパス: rRNA

1 rRNA promoters were activated by purified R. sphaeroides

2 rRNA-modifying enzymes participate in ribosome assembly.

3 ned 402 new multigene sequences from the 12S rRNA, 16S rRNA, and tRNA (val) regions of the mitochondr

4 16S rRNA amplicon sequence analyses revealed that acetate/la

5 16S rRNA gene amplicon sequencing indicated that alterations

6 16S rRNA gene sequence analysis revealed diverse gut communi

7 16S rRNA gene sequencing of SIgA-coated/uncoated bacteria (I

8 16S rRNA gene sequencing was performed in a cohort of 83 bio

9 16S rRNA gene sequencing was utilized to determine microbiot

10 16S rRNA gene-based analyses suggest that the seep samples a

11 16S rRNA PCR/sequencing detected a potential pathogen in 28

12 16S rRNA PCR/sequencing has higher sensitivity to detect bac

13 16S rRNA sequencing showed expansion of colitogenic Bacteroi

14 16S rRNA sequencing techniques were used to investigate the

15 16S rRNA-based analyses were used to identify bacterial taxa

16 16s rRNA-based analysis was performed on oral swabs and stoo

17 n increase was 109 transcripts per 10(4) 16S rRNA, CI(95%) = [-13.6, 246]).

18 asons examined, as evidenced by abundant 16S rRNA and hgcA transcripts clustering with this family.

19 Additionally, 16S rRNA gene sequencing results showed that anammox bacteri

20 to our microfluidic nanoarray to amplify 16S rRNA using dPCR and then perform dHRM to identify the tw

21 By analyzing 16S rRNA and whole metagenome shotgun sequencing data in tan

22 formed a case-control study by analyzing 16S rRNA microbial profiling, shotgun metagenomics and SCFAs

23 Nubeam is also useful in analyzing 16S rRNA sequencing data, which is a more prevalent type of

24 he most widespread ESBL gene family) and 16S rRNA (a proxy for bacterial load) abundance data from 83

25 s question, using metatranscriptomic and 16S rRNA gene profiling techniques to compare the microbiome

26 s included Gram stain Nugent scoring and 16S rRNA gene qPCR and HiSeq sequencing.

27 ased on untargeted mass spectrometry and 16S rRNA gene sequencing, both stress and Test diet altered

28 Using high-resolution metabolomics and 16S rRNA gene sequencing, plasma/urine metabolomes and the f

29 ng a combined approach of (RAPD)-PCR and 16S rRNA gene sequencing.

30 entify biological nitrogen fixation) and 16S rRNA genes.

31 consisting of 1116 fecal metabolites and 16s rRNA microbiome from 786 individuals.

32 ere assessed for biomass, viability, and 16S rRNA profiles.

33 biofilms on MUC2-coated coverslips, and 16S rRNA sequencing showed a unique biofilm profile with sub

34 We applied 16S rRNA gene sequencing to all nasal swabs.

35 By analyzing bacterial 16S rRNA gene sequences isolated from clinical samples, we u

36 h-throughput sequencing of the bacterial 16S rRNA gene to assess whether significant vertical stratif

37 copy numbers comparable to the bacterial 16S rRNA gene.

38 udinal metagenomics data, including both 16S rRNA and whole-metagenome shotgun sequencing data, enhan

39 are distinct from the references by both 16S rRNA fractional content and phylogeny, with the former d

40 c clade based on the phylogenies of both 16S rRNA genes and ribosomal proteins, which we propose to n

41 robiota and metabolites were analyzed by 16S rRNA gene amplicon sequencing and NMR.

42 Microbiota composition, assessed by 16S rRNA gene amplicon sequencing, also differed significant

43 ic) from the same geographic location by 16S rRNA gene sequencing.

44 lected, and microbiomes were analyzed by 16S rRNA gene sequencing.

45 sparse bacterial signal was detected by 16S rRNA sequencing (n = 40 of 50) compared to environmental

46 collected longitudinally and analyzed by 16S rRNA sequencing.

47 Stool samples were analyzed by 16S rRNA V4 region sequencing, and GMB function was inferred

48 enum and sigmoid colon was determined by 16S rRNA-amplicon-sequencing.

49 DNA and cDNA 16S rRNA gene profiling demonstrated that the microbial comm

50 functions of these species, we combined 16S rRNA sequencing and shotgun metagenomics to characterize

51 Here we performed a comparative 16S rRNA gene survey of the rhizosphere of 4 domesticated an

52 For 16S rRNA, both enzyme and priming had a significant effect w

53 ofiles were assessed using datasets from 16S rRNA sequencing, Nanostring miRNA and GC-MS targeted ana

54 Furthermore, 16S rRNA gene sequencing showed that TA@RAs could increase t

55 and MTERF4, and contains hypomethylated 16S rRNA.

56 cific endoribonuclease that functions in 16S rRNA processing in both alpha- and gamma-proteobacteria.

57 Culture-independent 16S rRNA gene analysis revealed that both bacteria and archa

58 ing the PacBio sequencing of full-length 16S rRNA gene.

59 An in vivo mutation of the MG 16S rRNA which could be associated with tetracycline resista

60 We integrate gut microbiome 16S rRNA amplicon and shotgun metagenomic sequence data with

61 The Illumina MiSeq 16S rRNA gene amplicon sequencing of reactors showed that th

62 kb) which were screened against an NCBI 16S rRNA gene database.

63 Meta-analysis of 16S rRNA amplicon sequence data and metagenome-assembled gen

64 he assay was able to detect amplicons of 16S rRNA and katG mRNA generated from 0.1 pg and 10 pg total

65 l PCR with the high-throughput nature of 16S rRNA gene amplicon sequencing.

66 Sequencing of 16S rRNA gene amplicons from microbiomes harbored in adult m

67 gle cells were analysed by sequencing of 16S rRNA genes in the oligotrophic North Pacific Subtropical

68 ase AM was found to mature the 5' end of 16S rRNA, a reaction previously attributed to RNase G.

69 -pairing interactions with the 3' end of 16S rRNA, mRNA Shine-Dalgarno (SD) sequences positioned upst

70 Metagenomic predictions based on 16S rRNA gene profiling analysis were similar, and there was

71 ng to the metabolic predictions based on 16S rRNA gene sequences, the relative abundance of functiona

72 up to 10(8) cells per g of soil based on 16S rRNA gene sequencing and quantification.

73 tween non-CA and CA individuals based on 16S rRNA gene sequencing.

74 Quantitative PCR, 16S rRNA gene metabarcoding and shotgun metagenomic sequenci

75 s race-specific microbiota, we performed 16S rRNA gene-based sequencing of retrospective tumor and ma

76 ive, cross-sectional study, we performed 16S rRNA sequencing on stool swab samples collected from neo

77 We have identified a pre-16S rRNA precursor that accumulates in the S. meliloti Delta

78 pathogen, also accumulates a similar pre-16S rRNA.

79 We profiled (16S rRNA sequencing) > 700 semi-aquatic bacterial communitie

80 entation by quantitative and qualitative 16S rRNA gene amplification and amplicon sequencing.

81 ction of bacterial DNA using broad-range 16S rRNA gene hybrid capture ("16S Capture").

82 Included studies reported 16S rRNA gene sequences of fecal samples from HIV+ patients.

83 ing RNAseq of the citrus host responses, 16S rRNA gene sequencing to characterize citrus-associated m

84 Our bacterial results (16S rRNA) reveal that (1) there are colony level differences

85 w multigene sequences from the 12S rRNA, 16S rRNA, and tRNA (val) regions of the mitochondrial genome

86 encing of saliva and middle ear samples, 16S rRNA sequencing, molecular modeling, and statistical ana

87 Here, we sequenced 16S rRNA gene amplicons to elucidate the attached and suspen

88 erial taxa were quantified by sequencing 16S rRNA genes in fecal samples collected at 6, 12, 18, and

89 genes were monitored in water and soil, 16S rRNA as an indicator of total bacterial load, intI1 as a

90 In this report, the 16S rRNA gene amplicon sequencing method was used to identif

91 study, we sequenced the V6 region of the 16S rRNA gene and used quantitative polymerase chain reactio

92 mmunities is the choice of region of the 16S rRNA gene for sequencing.

93 Analysis of the V4 region of the 16S rRNA gene in fecal samples shows maternal carriage of Pr

94 fied as Bacillus mojavensis based on the 16S rRNA gene sequencing and biochemical properties.

95 samples were amplified by targeting the 16S rRNA gene V4 region, and microbial findings were correla

96 , intI1, tet(O), tet(Q), tet(X), and the 16S rRNA gene) decreased significantly in runoff with increa

97 enced (V3-V4 hypervariable region of the 16S rRNA gene) using MiSeq (Illumina, CA).

98 e in the processing of the 3' end of the 16S rRNA in Escherichia coli.

99 U), and crosslinks specifically with the 16S rRNA, and several mtLSU proteins and assembly factors.

100 reduction, which is consistent with the 16S rRNA-gene based characterization.

101 High-throughput 16S rRNA gene sequencing was used to identify the bacterial

102 thin a farming cohort, were subjected to 16S rRNA amplicon sequencing to characterize bacterial commu

103 rial population (1:4.2 copies of nifH to 16S rRNA).

104 by securing efficient methylation of two 16S rRNA residues, and ultimately serves to coordinate subun

105 We further used 16S rRNA gene amplicon sequencing of genomic DNA (gDNA) and

106 mollusk-prokaryote interactions, we used 16S rRNA gene amplicons to evaluate how microbial compositio

107 n = 19) swards, was characterised using 16S rRNA amplicon sequencing.

108 ctors across a phytoplankton bloom using 16S rRNA gene amplicon community profiles.

109 n = 36 pregnant, n = 39 lactating) using 16S rRNA gene amplicon sequencing and assessed whether the r

110 munities were sampled and analyzed using 16S rRNA gene amplicon sequencing.

111 unambiguous species identification using 16S rRNA gene and average nucleotide identity, 2) determinat

112 and community composition assessed using 16S rRNA gene sequences.

113 iations in both health and disease using 16S rRNA gene sequencing of 410 individuals from across the

114 s from 100 Lynch syndrome patients using 16S rRNA gene sequencing of colon biopsies, coupled with met

115 thral microbiota was characterized using 16S rRNA gene sequencing.

116 ia, aged <= 6 years, were analyzed using 16S rRNA gene sequencing.

117 of the gut microbiota was analyzed using 16S rRNA metagenomics sequencing.

118 irth cohort, we modeled maturation using 16S rRNA sequence data of the human gut microbiome in infant

119 y characterizing sediment bacteria using 16S rRNA sequences, bacterial community composition of a sed

120 faecal gut microbiome was assessed using 16S rRNA sequencing (Illumina MiSeq platform).

121 e denitrifying microbial community using 16S rRNA sequencing and quantitative polymerase chain reacti

122 ere measured in subgingival plaque using 16S rRNA sequencing.

123 31 non-NAFLD controls are analyzed using 16S rRNA sequencing; an independent Western cohort is used f

124 The samples were analyzed using 16S rRNA-gene sequencing (MiSeq-Illumina) and QIIME pipeline

125 Archaeal picoplankton characterized via 16S rRNA amplicon sequencing.

126 Bacterial profiling was achieved via 16S rRNA metabarcoding.

127 , oral bacterial community profiling via 16S rRNA sequence analysis remains a valuable technique for

128 d 3 years (n = 140) were quantified with 16S rRNA gene and shotgun metagenomic sequencing (n = 101 si

129 antification of PC intake, together with 16S rRNA gene sequencing of the gut microbiota, and faecal a

130 revotellaceae, as evidenced by qPCR with 16S rRNA primers.

131 responding samples were also paired with 16S rRNA sequencing to describe the microbial community and

132 PCR amplification and sequencing of the 16S-rRNA gene, the potential presence of FE producing bacter

133 YbeY results in the accumulation of the 17S rRNA precursor.

134 In this study we explored both 16S and 18S rRNA microbial communities of D. armigerum from both wil

135 ganization, overaccumulation of 5.8S and 18S rRNA precursors, and an imbalanced 40S:60S ribosome subu

136 ted for microbial eukaryote communities (18S rRNA), and (5) developmental stage has an influence on t

137 ed Rrp9/U3-55K protein are essential for 18S rRNA production by the SSU-processome complex.

138 ke 5 (METTL5) protein catalyzes m(6)A in 18S rRNA at position A(1832) We report that absence of Mettl

139 ficantly decreased m(2) (6,6)A levels in 18S rRNA, indicating a dominant-negative effect of this vari

140 the catalytic activity on m(2) (6,6)A in 18S rRNA, is essential for 40S assembly.

141 o major changes in m(2) (6,6)A levels in 18S rRNA.

142 which were applied for visualization of 18S rRNA by fluorescent in situ hybridization in HEK-293T ce

143 NA, which is essential for processing of 18S rRNA(4).

144 I]) and nuclear (small subunit 18S rRNA [18S rRNA]) genes to determine a species-level molecular iden

145 se I [mtCOI]) and nuclear (small subunit 18S rRNA [18S rRNA]) genes to determine a species-level mole

146 Small subunit 18S rRNA gene sequencing and accessory pigment analysis disp

147 idely used barcode, the V9 region of the 18S rRNA gene, to study the effect of environmental conditio

148 ession of SNORD42A with concomitant U116 18S rRNA 2'-O-methylation is essential for leukemia cell gro

149 table during the activation process were 18S rRNA and SDHA mRNA, encouraging their usage as reference

150 or mTOR inhibition to show that 28S and 18S rRNAs undergo accelerated degradation.

151 esponsible for the final steps of 5S and 23S rRNA 5'-end maturation have remained unknown.

152 ase Center (GAC) RNA domain in bacterial 23S rRNA is directly bound by ribosomal protein L11, and thi

153 confirms known modifications present in 23S rRNA and additionally allows for localization of Mg2+ io

154 rrelated with the presence of alleles of 23S rRNA (A2142G/A2143G) for clarithromycin (kappa coefficie

155 methyltransferases that convert A2058 of 23S rRNA to m(6)(2)A2058.

156 o found to generate the mature 5' end of 23S rRNA, subsequent to a newly identified prior processing

157 ing of several classes of antibiotics to 23S rRNA, resulting in a multidrug-resistant phenotype in ba

158 POET activates hibernating ribosomes via 23S rRNA pseudouridine synthase RluD, which increases riboso

159 nking circularly permutated 5S rRNA with 23S rRNA we generated a bacterial strain devoid of free 5S r

160 th the longest length sequences (16S and 23S rRNAs), as well as a substantial improvement on long-dis

161 ons in the Expansion Segment 7 (ES7L) of 25S rRNA that allowed the formation of mature, translational

162 3 is required for maturation of 5.8S and 25S rRNAs.

163 d compensatory mutations at the 752 and 2609 rRNA positions, we show that integrity of the base pair

164 that NSUN-1 is writing the second known 26S rRNA m(5)C at position C2982.

165 RNA was accompanied by increased 18S and 28S rRNA levels and elevated protein translation.

166 eps of the two large ribosomal subunit (50S) rRNAs, 23S and 5S pre-rRNAs, are catalyzed by the double

167 5S rRNA is an indispensable component of cytoplasmic riboso

168 he fully assembled ribosomes carrying 23S-5S rRNA are highly active in translation.

169 choring of the Rpf2 subcomplex containing 5S rRNA, rpL5, rpL11, Rpf2 and Rrs1, which initially docks

170 nerated a bacterial strain devoid of free 5S rRNA.

171 ll subunit, while the large subunit lacks 5S rRNA.

172 3' exonuclease, performs the last step of 5S rRNA 5'-end maturation.

173 Our results argue that the autonomy of 5S rRNA is preserved due to its role in ribosome biogenesis

174 By linking circularly permutated 5S rRNA with 23S rRNA we generated a bacterial strain devoi

175 bosome engineering to investigate whether 5S rRNA autonomy is critical for ribosome function and cell

176 ns 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes.

177 TSCR2, Arabidopsis SMO4 participates in 5.8S rRNA maturation.

178 oduces 12S pre-rRNA, a precursor to the 5.8S rRNA. However, a heterozygous Bccip loss was insufficien

179 eages appear to be logarithmically accreting rRNA over the last billion years.

180 port that Fe(2+) promotes degradation of all rRNA species of the yeast ribosome and that it is bound

181 her cNHEJ factors, resides in nucleoli in an rRNA-dependent manner and is co-purified with the small

182 Treponema pallidum DNA in blood and rRNA in CSF were detected using polymerase chain reactio

183 a its RGG domain and cross-links to mRNA and rRNA.

184 s challenging because ribosomal proteins and rRNA preclude most spectroscopic measurements of protein

185 RNA substrates to fine-tune spliceosomal and rRNA function, accommodating changing requirements for s

186 RNA modification that is present on tRNA and rRNA and has recently been investigated in eukaryotic mR

187 and MVs were similarly enriched in tRNAs and rRNAs, but depleted in snoRNAs.

188 nce identified the genetic background behind rRNA gene mutations causing variable levels of resistanc

189 nctions associated with ribosome biogenesis, rRNA processing, ribosome binding, GTP binding, and hydr

190 ecause those ions are tightly coordinated by rRNA and deeply buried in the ribosome.

191 xpected gene regulation directly mediated by rRNA and how ribosome evolution drives translation of cr

192 al rearrangements in the protein and cognate rRNA upon interaction.

193 We find that NSUN-4 acts as a dual rRNA and tRNA methyltransferase in C. elegans mitochondr

194 -mediated ECT2 recruitment to rDNA, elevated rRNA synthesis, and transformed growth.

195 human nucleoli operates near genes encoding rRNAs to drive their expression.

196 a new structural model for the ErmC or ErmE-rRNA complex.

197 nstrate that Mn(2+) competes with Fe(2+) for rRNA-binding sites and that protection of ribosomes from

198 de that loss of a single enzyme required for rRNA methylation has profound and highly specific effect

199 n assembly of 94-ribosomal proteins and four-rRNAs with an additional protein mass of ~700 kDa on the

200 have been developed to detect circRNAs from rRNA-depleted RNA-seq data based on back-splicing juncti

201 ostic performance of 16S ribosomal RNA gene (rRNA) polymerase chain reaction (PCR)/sequencing of SF a

202 tion of stable G-quadruplexes (G4s) in human rRNA was recently reported.

203 ed in changes in chondrogenic, hypertrophic, rRNA and osteoarthritis related gene expression.

204 Moreover, we identified rRNA processing defects that cause higher percentage of

205 zation highlights the importance of m(6)A in rRNA in stemness, differentiation, development, and dise

206 s from individuals with LCC are defective in rRNA processing.

207 e specificities and modification patterns in rRNA, and highlight a differential impact of m(4)C methy

208 els of ac(4)C across hundreds of residues in rRNA, tRNA, non-coding RNA and mRNA from hyperthermophil

209 In some instances, rRNA modifications can confer antibiotic resistance.

210 a provide the first structural insights into rRNA maturation in bacteria by revealing how these RNase

211 py approach to detail the protein inventory, rRNA modification state, and structures of 40S ribosomal

212 urified RNA polymerase (RNAP) to investigate rRNA synthesis in the photoheterotrophic alpha-proteobac

213 munity composition by sequencing 16S and ITS rRNA regions and function using community-level physiolo

214 (ESs) consist of multitudes of tentacle-like rRNA structures extending from the core ribosome in euka

215 protection of ribosomes from Fe(2+)-mediated rRNA hydrolysis correlates with the restoration of cell

216 regions that encode highly conserved miRNAs, rRNAs or tRNAs.

217 Mitochondrial rRNAs (mt-rRNAs) undergo a series of nucleotide modifica

218 by a nuclear gene, is responsible for 12S mt-rRNA methylation at m(4)C839 both in vivo and in vitro W

219 hat catalyzes the modification of the 16S mt-rRNA A-loop U1369 residue.

220 Mitochondrial rRNAs (mt-rRNAs) undergo a series of nucleotide modifications afte

221 the functional organization of the multicopy rRNA gene clusters (rDNA) in the nucleolus is less well

222 accounted for as much as 29.67% of total non-rRNA transcriptome in one mite library.

223 ops at intergenic spacers flanking nucleolar rRNA genes.

224 2'-O-rRNA methylation, which is essential in eukaryotes and a

225 ly focusing on a line only containing 20% of rRNA gene copies (20rDNA line), we investigated the impa

226 idant-induced Fe(2+)-mediated degradation of rRNA.

227 Here, we investigate the dysregulation of rRNA synthesis in CS.

228 ta255-344 mutation affects proper folding of rRNA helices H68-70 during anchoring of the Rpf2 subcomp

229 rotein complex involved in the maturation of rRNA and the regulation of the cell cycle.

230 While the molecular mechanisms of rRNA transcription regulation have been elucidated in gr

231 total number of tRNA genes, total number of rRNA genes, and codon usage bias in ribosomal protein se

232 Profiling of rRNA operons using the Oxford MinION yielded 65,706 2-D

233 ith U3 snoRNA expression led to reduction of rRNA levels and translational capacity, whilst induced e

234 that CSA and CSB are positive regulators of rRNA synthesis via Ncl regulation.

235 dia, and represents an intermediate state of rRNA reduction.

236 Although the initial steps of rRNA processing in Escherichia coli (E. coli) were descr

237 apply our system to analyze the turnover of rRNA during ribophagy induced by oxidative stress or mTO

238 nitially docks onto the flexible domain V of rRNA at earlier stages of assembly.

239 requires the stoichiometric accumulation of rRNAs and proteins encoded in two distinct genomes.

240 of detection of T. pallidum DNA in blood or rRNA in CSF at the index episode were significantly lowe

241 e-rRNA processing step that produces 12S pre-rRNA, a precursor to the 5.8S rRNA. However, a heterozyg

242 external transcribed spacer (ETS) of 45S pre-rRNA, as MTR4 does.

243 BCCIP is vital for a pre-rRNA processing step that produces 12S pre-rRNA, a precu

244 ropic developmental defects and aberrant pre-rRNA processing.

245 s that despite the variants both driving pre-rRNA processing defects and 80S monosome reduction, the

246 U3 and Rrp9 are required for early pre-rRNA cleavages at sites A0, A1 and A2, but the mechanism

247 B in atprmt3-2, which accounts for early pre-rRNA processing defects and results in nucleolar stress.

248 trated in the nucleolus, where the early pre-rRNA processing reactions take place.

249 all classes of RNA, and is essential for pre-rRNA processing.

250 BCCIP is a critical factor for mammalian pre-rRNA processing and 60S generation and offer an explanat

251 1 plays a fundamental role in processing pre-rRNA.

252 RNAs (pre-rRNAs) and ribosomal proteins, pre-rRNA processing, and subunit assembly with the aid of nu

253 nine methyltransferase AtPRMT3 regulates pre-rRNA processing; however, the underlying molecular mecha

254 les of mice without NO66, ribosomal RNA, pre-rRNA, and protein synthesis all increased.

255 es recognize and process double-stranded pre-rRNA.

256 ased H3K4me3 and H3K36me3 and suppressed pre-rRNA expression.

257 ibosomal subunit (50S) rRNAs, 23S and 5S pre-rRNAs, are catalyzed by the double-strand specific ribon

258 inated expression of pre-ribosomal RNAs (pre-rRNAs) and ribosomal proteins, pre-rRNA processing, and

259 RPS2B binds directly to pre-rRNAs in the nucleus, and such binding is enhanced in at

260 in (Ncl), a nucleolar protein that regulates rRNA synthesis and ribosome biogenesis, interacts with C

261 ad and found in messenger (mRNA), ribosomal (rRNA), and noncoding RNAs.

262 rved domain that binds the 5S ribosomal RNA (rRNA) and allows its incorporation into ribosomes.

263 mediate the expression of the ribosomal RNA (rRNA) components of ribosomes.

264 We reanalyzed raw 16S ribosomal RNA (rRNA) gene sequences and metadata from published studies

265 Post-transcriptional ribosomal RNA (rRNA) modifications are present in all organisms, but th

266 nd to the ribosome reveal 23S ribosomal RNA (rRNA) nucleotide A1913 positional changes that are depen

267 macrolides interacts with 23S ribosomal RNA (rRNA) nucleotides A752 and U2609, that were proposed to

268 orks (sectors) within the 23S ribosomal RNA (rRNA) of the large ribosomal subunit.

269 d pseudouridine levels in the ribosomal RNA (rRNA) of the patients.

270 ion, but regulatory roles for ribosomal RNA (rRNA) remain largely unexplored.

271 Ribosomal RNA (rRNA) transcription by RNA polymerase I (Pol I) is the f

272 (tiRNA) and transcription of ribosomal RNA (rRNA), respectively.

273 efficient physical removal of ribosomal RNA (rRNA), which otherwise dominates transcriptomic reads.

274 ted two methods for preparing ribosomal RNA (rRNA)-depleted sequencing libraries for RNA-Seq of whole

275 ylation at uridine 116 of 18S ribosomal RNA (rRNA).

276 kinds: maxicircles encoding ribosomal RNAs (rRNAs) and proteins and minicircles bearing guide RNAs (

277 Ribosomal RNAs (rRNAs) are essential components of the ribosome and are

278 tors that process and modify ribosomal RNAs (rRNAs) or are involved in ribosome assembly.

279 s maturation of 18S and 5.8S ribosomal RNAs (rRNAs), and Nop53 is required for maturation of 5.8S and

280 ding RNAs (ncRNAs) including ribosomal RNAs (rRNAs), transfer RNAs (tRNAs), small nuclear RNAs (snRNA

281 tion to study microbiota composition by 16 S rRNA amplicon sequencing and for short-chain fatty acid

282 alpha-helical conformation that induces 28 S rRNA nucleotide rearrangements that suppress the peptidy

283 nal transcribed spacer (ITS) region and 28 S rRNA.

284 ed, the P. locustae ribosome retains several rRNA segments absent in other microsporidia, and represe

285 te the binding of Ncl to rDNA and subsequent rRNA synthesis.

286 m(4)C methylation in bacterial small subunit rRNA on the ribosome, we found that METTL15 depletion re

287 S. meliloti can reciprocally complement the rRNA processing defect in a DeltaybeY mutant of the othe

288 where they refold and chemically modify the rRNA and prevent early translation before full maturatio

289 he functionally critical conformation of the rRNA domain in the fully assembled ribosome.

290 ind that addition of hgbRNA depletion to the rRNA-depletion protocol for library preparation from blo

291 n contrast, eIF2alpha-R53 interacts with the rRNA backbone only in the open complex, and the R53E sub

292 The rRNAs and gRNAs are 3' uridylated.

293 ions for adenine at position -7 in the three rRNA promoters strongly increased intrinsic promoter act

294 e process from accurate ribosome assembly to rRNA processing.

295 hat 20 million reads that are not mapping to rRNA/tRNA are required for global detection of translate

296 mplexes, requires the correct folding of two rRNA elements in the subunit head and the proper positio

297 and efficient approach to detect DECs using rRNA depleted RNA-seq data.

298 serially collected and evaluated via 16S V4 rRNA sequencing.

299 ntisense RNAs are the main substrates, while rRNA, tRNA, and other conserved non-coding RNAs (ncRNAs)

300 ity of extra-nuclear G4s are associated with rRNA.

301 hus, distinct interactions of eIF2alpha with rRNA or mRNA stabilize first the open, and then closed,