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1 -coding variants in experimentally predicted regulatory regions).
2 E-boxes within the Ppargamma transcriptional regulatory region.
3 isparate outputs while utilizing this shared regulatory region.
4 cally induced removal of the auto-inhibitory regulatory region.
5 nding sequence(s) (DBS) in the TSLP promoter regulatory region.
6 necessary for DNA accessibility of a shared regulatory region.
7 peration between GR and NF-kB at a subset of regulatory regions.
8 convergent molecular changes in proteins or regulatory regions.
9 mised interactions between H4K20me3 and gene-regulatory regions.
10 by binding DNA recognition sites in genomic regulatory regions.
11 n factors that bind to stably accessible DNA regulatory regions.
12 ith chromatin accessibility and enriched for regulatory regions.
13 CNVs increase the risk of MDD by disrupting regulatory regions.
14 tecting enhancer RNAs that arise from distal regulatory regions.
15 lopedia of DNA Elements- and Roadmap-derived regulatory regions.
16 ter-enhancer interactions and demarcate gene regulatory regions.
17 t effect on pseudogene formation and loss of regulatory regions.
18 sing H3K27me3 deposition at critical genomic regulatory regions.
19 exome sequencing, and variants in non-coding regulatory regions.
20 on by altering the copy number of intergenic regulatory regions.
21 modeling deacetylase (NuRD) complex to Pdcd1 regulatory regions.
22 the Isl1/Lhx3 pair initially engage distinct regulatory regions.
23 cinomas (PDAs) and identify commonly mutated regulatory regions.
24 o TF binding, and often must be removed from regulatory regions.
25 l promoter regions, but vary in the upstream regulatory regions.
26 f rare naturally occurring mutations in gene-regulatory regions.
27 cogenic super-enhancers involving long-range regulatory regions.
28 ms, including genomic aberrations in the DNA regulatory regions.
29 or disease association on TF binding to gene regulatory regions.
30 iptional repressors acting directly on IFN-I regulatory regions.
31 enerating gene amplifications and remodeling regulatory regions.
32 to identify functional alleles in noncoding regulatory regions.
33 at somatic mutational hotspots and putative regulatory regions.
34 ere canonical LoF or non-coding in predicted regulatory regions.
35 hey are only required early to establish cis-regulatory regions.
36 thousands of SVs intersecting genes and cis-regulatory regions.
37 including several thousand prenatal-specific regulatory regions.
38 polygenic phenotypes, and enriched in active regulatory regions.
39 ciated with diseases or phenotypic traits in regulatory regions(1,7) is almost entirely attributable
40 2) and I-promoter transcription, with 3' IgH regulatory region (3' IgHRR) enhancers controlling the l
41 e constant genes and is controlled by the 3' regulatory region (3'RR) in a stimulus-dependent manner.
42 iption is controlled by the superenhancer 3' regulatory region (3'RR) that establishes long-range chr
43 mputational tools fail to reliably determine regulatory region accessibility from the analysis of the
44 causal variant in a cardiac muscle specific regulatory region activated during cardiomyocyte differe
46 thioredoxin-binding domains and the central regulatory region actively primes MKK6, a key ASK1 subst
47 m one set of targets to another, controlling regulatory region activity and gene expression as cell d
48 tifs found enriched in differentially active regulatory regions after interferon-beta stimulus, findi
49 dification, particularly methylation of gene regulatory regions, also acts to shape human brain funct
52 utated the SaeR-binding sequences in the hla regulatory region and determined the contribution of thi
53 induced AhR and MTA2 recruitment to the Stc2 regulatory region and induced Stc2 gene expression, whic
54 minantly (14 of 15 patients) in the negative regulatory region and Pro-Glu-Ser-Thr-rich domains, the
55 mage and functional decline enrich on kidney regulatory regions and associate with gene expression ch
56 -resistant ovarian lines identify key distal regulatory regions and associated master regulator trans
57 ranscriptional network, co-occupying cardiac regulatory regions and controlling cardiomyocyte-specifi
58 te that MntR binds to both the mneP and mneS regulatory regions and directly activates transcription
60 ated loci are enriched with newly mapped cis-regulatory regions and identify T1D-associated variants
62 est that CAR is constitutively bound to gene regulatory regions and is regulated by exogenous agents
63 which could benefit screening, disruption of regulatory regions and multiplex base editing applicatio
64 iochemical and genetic data, we discover key regulatory regions and propose a Mec1 activation mechani
65 nism involving increased methylation of gene-regulatory regions and reduced levels of antiinflammator
66 lecular mechanisms of these NEDD4-1 and WWP2 regulatory regions and their interplay with allosteric b
67 Given that most GWAS hits are in putative regulatory regions and transcript abundance is physiolog
68 ignificantly over-represented in active gene regulatory regions and transcription factor binding site
69 on trans-activation through 5' conserved cis-regulatory regions and, in particular, whether the mamma
70 ranscriptomes limits our ability to identify regulatory regions, and in some cases can lead to misint
72 -localize with tissue- or cell-type-specific regulatory regions, and we show that the resulting score
73 proteins across a set of coordinately bound regulatory regions, and which detects and quantifies pro
74 ta resources include evidence-based gene and regulatory region annotation, genome variation and gene
79 ytokines is mediated by the induction of new regulatory regions as well as the activation of primed r
80 s in PTSD patients are smaller in prefrontal regulatory regions, as well as in broader emotion and se
81 idate CRMs based on the input TF bindings at regulatory regions associated with genes of interest.
82 t aberrantly methylated CpGs are enriched in regulatory regions associated with MYC protein motifs an
83 s located in their 5' regulatory region (the regulatory region-associated microsatellite, RRAM) that
85 s toward detecting 'open' chromatin found at regulatory regions but are not well suited to studying c
86 repressor complex was absent from the CD133-regulatory region, but was present in the MCF-7 and prim
88 cific versus tissue-independent lipid-linked regulatory regions by contrasting with parallel assessme
89 1 controls chromatin accessibility at distal regulatory regions by modulating the recruitment of SMAR
90 ctions between BMAL1 enhancers and other cis-regulatory regions by RNA polymerase II chromatin intera
91 -guanines (CpGs) in gene promoters and other regulatory regions by specific demethylase(s) generates
92 esults suggest that methylation of the Nr3c1 regulatory region can contribute to the mechanisms under
93 e variants (SNVs) located in transcriptional regulatory regions can result in gene expression changes
94 an N-terminal kinase domain and a C-terminal regulatory region consisting of a approximately 100-resi
95 domain, followed by a likely posttranslation regulatory region consisting of high serine and threonin
97 Super-enhancers are an emerging subclass of regulatory regions controlling cell identity and disease
98 nding transcription factor 2 (SREBP2) at key regulatory regions controlling the expression of cholest
99 al analysis of five representatives of these regulatory regions demonstrated direct binding of OpaR i
101 tivating transcription factors to shared cis-regulatory regions dictates hepatic lipid handling.
102 demonstrating that DNA methylation of the 5' regulatory region directly reduces C9orf72 expression an
103 ted variants, although located in putatively regulatory regions, do not have detectable effects on ge
104 r binding (TF) motifs in the DNA sequence of regulatory regions, enabling researchers to infer which
105 are isoform of NADK (isoform 3) lacking this regulatory region exhibits constitutively increased acti
106 he interaction of OGG1 with its substrate at regulatory regions followed by conformational adjustment
107 kbp region of the Z chromosome in a putative regulatory region for follistatin, an antagonist of the
108 have previously published DNA maps of these regulatory regions for kidney tubule cells and glomerula
109 ed with brain diseases, we defined noncoding regulatory regions for major cell types of the human bra
110 number of available human variants and added regulatory regions for many mouse cell types and develop
111 identify novel genes by determining putative regulatory regions for these and other tissues relevant
112 erences of H3K18ac and H3K27ac enrichment in regulatory regions, found a correlation between these mo
117 ing mosquitoes, only a few germline-specific regulatory regions have been characterised to date and t
118 within and between CRF clades suggesting cis-regulatory regions have been conserved throughout CRF ev
122 sposons into the genome can disrupt genes or regulatory regions, impacting cellular function, so for
123 induced higher DNA methylation of the Nr3c1 regulatory region in adulthood, and this effect persiste
126 says showed that AioR interacts with the mcp regulatory region in vivo and in vitro, and the precise
129 ularly evident in HTS assays for identifying regulatory regions in DNA (DNase-seq, ChIP-seq, FAIRE-se
130 ociated variants are preferentially found in regulatory regions in immune cells, particularly CD4(+)
131 eferential mapping of associated variants to regulatory regions in kidney but not extra-renal tissues
133 dictions, we identified SNVs within putative regulatory regions in promoters, transcription factor bi
134 sociated SNPs in the genome map to noncoding regulatory regions in T cells, but the nature of underly
135 n of G-quadruplex (G4) DNA structures in key regulatory regions in the genome has emerged as a second
138 e enrichment of allergy SNPs falling in gene regulatory regions in various cells using Encode Roadmap
139 the prevalence of G4 sequence motifs at gene regulatory regions in various genomes, including in huma
143 Transcription sites of the full svb cis-regulatory region inserted into a different chromosome c
144 associated regions in vivo uncovers a distal regulatory region involved in Gja1 (Cx43) expression.
145 DNA methylation at Pdcd1's promoter-proximal regulatory regions is highly correlated with its express
146 we provide evidence that variation at these regulatory regions is likely to also influence gene expr
147 nes are hubs of interaction between multiple regulatory regions, likely to ensure their sustained exp
150 of the expansion segment 7 (ES7), a putative regulatory region located on the surface of the 60S ribo
152 they are not designed to identify individual regulatory regions mediating risk or the genes under the
153 ct moa, to show that convergent evolution of regulatory regions, more so than protein-coding genes, i
155 rized by rearrangements within the noncoding regulatory region (NCCR) and 1 point mutation, S267L in
156 e, and that mutations in melanocyte-specific regulatory regions near DDB1/TMEM138 correlate with expr
158 etic differences are restricted to two small regulatory regions near genes associated with pterin [se
159 Consistent with gene expression changes, regulatory regions near genes involved in inflammatory r
160 analysis revealed OpaR binding sites in the regulatory region of 55 carbon transporter and metabolis
161 he evening primrose Oenothera Repeats in the regulatory region of accD (the plastid-encoded subunit o
162 color variation by repeatedly recruiting the regulatory region of Agouti to modulate seasonal coat co
164 We characterize an interaction between the regulatory region of CFTR and calmodulin, the major calc
165 ssions, we identify a cis-regulatory module, Regulatory region of DUO1 (ROD1), which replicates the e
166 vide significant insight into this important regulatory region of EZH2 and the first characterization
167 erential methylation in the -1058 to -587 bp regulatory region of FCGRT contributes to FcRn expressio
168 sertions of two transposable elements in the regulatory region of KNR6 can significantly enhance grai
170 transcription and encompassing the noncoding regulatory region of mtDNA in human and murine cells and
171 was identified and inserted in the upstream regulatory region of PeMYB11 The insertion resulted in s
172 ide polymorphisms (SNPs) (rs12641001) in the regulatory region of SPP1 exhibited a statistically sign
173 The GusR-specific DNA operator site in the regulatory region of the E. coli GUS operon is identifie
174 ters (PR1-1, PR1-2 and PR1-3) within the PR1 regulatory region of the Escherichia coli kps capsule ge
175 to interact with genomic elements within the regulatory region of the gene encoding the differentiati
178 racytoplasmic domain (ICD), which bound to a regulatory region of the PD-L1 locus containing a consen
180 spontaneous sorghum mutant and suggested the regulatory region of the SbCAD2 can be a target site for
181 mechanism in which a nucleosome found in the regulatory region of the SV40 minichromosome is directed
182 weep among all hunter-gatherer groups in the regulatory region of TRPS1-primarily involved in morphol
183 ues in a highly conserved stretch within the regulatory region of yeast MTHFR to create a series of f
185 ow that ATF3 is bound to the transcriptional regulatory regions of >30% of differentially expressed g
186 Here, we demonstrate that SOX11 binds to regulatory regions of 2 important genes for microenviron
189 oped for directing specific guide (g)RNAs to regulatory regions of any gene of interest, to enhance t
190 lerosis is complex and that variation in the regulatory regions of associated genes may be important
191 We find that TP63 binds to transcriptional regulatory regions of ATDC and KRT14 directly, increasin
192 leotide polymorphisms (SNPs) were located in regulatory regions of candidate genes that may serve as
194 ifs of transcription factors in the upstream regulatory regions of differentially expressed lncRNAs,
195 estigated the presence of DNA methylation in regulatory regions of FCGRT in samples of human liver an
196 een performed, alterations in the non-coding regulatory regions of GBM have largely remained unexplor
197 ary shift were also enriched in putative cis regulatory regions of genes differentially expressed dur
198 s in methylation levels within promoters and regulatory regions of genes involved in TLR signaling in
199 esigned a 20.5 Mb array targeting coding and regulatory regions of genes with a known role in BC (n =
200 asizing how the recent identification of cis-regulatory regions of genes within the eggshell patterni
202 gle-nucleotide polymorphisms mapped onto cis-regulatory regions of human MCs suggest that MC function
203 role in mitosis; however, H3S10ph also marks regulatory regions of inducible genes in interphase mamm
204 We cloned and analysed selected upstream regulatory regions of IRE1a and IRE1b, which revealed di
206 ition to shared target genes, Hoxa1 binds to regulatory regions of Nanog, and conversely Nanog binds
207 Using ncdDetect, we screened non-coding regulatory regions of protein-coding genes across a pan-
208 causal variants were concentrated in active regulatory regions of relevant cell types and tended to
209 , p50 NF-kappaB promoted binding of STAT1 to regulatory regions of selected IFNgamma-dependent genes,
215 e activities are then interpreted by the cis-regulatory regions of the genes involved in cell differe
217 disorder, variation that affects non-coding regulatory regions of the genome is likely to play an im
219 ylated regions preferentially affected known regulatory regions of the genome, specifically overlappi
221 ncreased beta-catenin recruitment within the regulatory regions of the Myc gene in tumor cells of the
223 e identify and functionally characterize the regulatory regions of the P. falciparum gene PF3D7_12347
227 to the RAG1 promoter as well as directly to regulatory regions of transcription factors previously i
228 k loci of genome-wide significance at likely regulatory regions on chromosomes 13q22.1 (rs11841589, n
229 nsferase DNMT3B, the recruitment of which to regulatory regions on the miR-203 locus is directed by S
231 r that classifies genome sequences as distal regulatory regions or not, given their histone modificat
232 ither: (1) residing within CRISPRi-sensitive regulatory regions, or (2) localizing in a chromatin acc
233 of aggregating motifs defined by gene exons, regulatory regions, or genome-wide sliding windows.
236 h chromatin unpacking in the WRKY6 and PDF12 regulatory regions, primed WRKY6 expression, unprimed PD
237 We propose a model in which the central regulatory region promotes ASK1 activity via its pleckst
238 on on incident CHD; these CpGs map to active regulatory regions proximal to long non-coding RNA trans
239 a more systematic way by targeting specific regulatory regions relevant for the phenotype studied.
240 rthermore, we identify a remote upstream cis-regulatory region required for the expression of NIN in
244 ments, we adapt the self-transcribing active regulatory region sequencing (STARR-seq) strategy, a hig
245 ut enhancer screen (self-transcribing active regulatory region sequencing (STARR-seq)), we assembled
246 Here, we adapted self-transcribing active regulatory region sequencing (STARR-seq)-a technology fo
247 r RE activity using self-transcribing active regulatory region sequencing and a recently generated mo
248 n adaptation of the self-transcribing active regulatory region sequencing approach, we identified 24
250 essed proteins contain within their proximal regulatory regions sites that are bound by SOX6 accordin
251 Variations in DNA methylation, especially in regulatory regions such as promoters and enhancers, are
254 d active states differ by small changes in a regulatory region that extends up to 28 angstrom from th
256 nslated region (UTR) of mRNAs is the primary regulatory region that mediates post-transcriptional con
257 lay an important role in methylation of gene regulatory regions that act as fetal-specific enhancers
258 parse in genes, reflecting the clustering of regulatory regions that act at short and long-range, whi
259 anscriptional start sites and other putative regulatory regions that are differentially accessible in
260 Strikingly, we also find a discrete set of regulatory regions that change in accessibility, consist
261 Our findings of transcribed uncharacterized regulatory regions that contain CRSs support their RNA-m
262 the noncoding genome, and found deletions in regulatory regions that contribute to disease causation.
263 sites in ASXL1 mutated MF cases are found in regulatory regions that could be associated with aberran
264 for cellular heterogeneity and can identify regulatory regions that separates cells from a complex p
265 ncer RNAs were produced from a subset of the regulatory regions, that they were critical for producti
266 hic microsatellite locus located in their 5' regulatory region (the regulatory region-associated micr
267 l enrichment of disease risk alleles on gene regulatory regions, they are not designed to identify in
269 hich preferentially integrate near genes and regulatory regions; thus, insertional mutagenesis is a s
270 erminus lines a long groove in the cytosolic regulatory region to inhibit the flippase activity.
275 egy to sequence the entire HTR7 gene and its regulatory regions to investigate the association of com
277 enrichment of IPF susceptibility signals in regulatory regions) to determine putatively causal genes
280 ent histone acetylation within proximal gene regulatory regions was coupled to cellular proliferation
283 rk to functionally characterise the putative regulatory regions we have identified and their links to
284 are, highly sequence-conserved, IEC-specific regulatory regions, we discovered an ancient enhancer up
286 han 86.6% of these computationally predicted regulatory regions were partially corroborated by indepe
287 turnover and chromatin remodeler binding at regulatory regions, where tight regulation of Pol II act
288 parted from standard practice by identifying regulatory regions which replicate across samples and co
289 roach we were able to identify two novel cis-regulatory regions, which direct Eya1 expression to the
290 ptor (GR) and STAT3 bind to the same genomic regulatory regions, which were specifically open and unm
291 ent of TF binding motifs in a list of scored regulatory regions, while controlling for sequence bias.
292 y at active enhancers and cell-type specific regulatory regions with binding sequences of master tran
293 ssociated variants are often found in distal regulatory regions with cell-type specific behaviours.
294 ethods for WGBS are mainly designed for gene regulatory regions with multiple under-methylated CpGs (
295 2.2 x 10(-7)), and were mostly in introns or regulatory regions with predicted effects including prot
296 rious histone modifications primarily in the regulatory region, with a major nucleosome located withi
297 uals with ASD were enriched for overlap with regulatory regions, with 23/28 CNVs disrupting histone p
298 and histone methylation marks identified DNA regulatory regions within the Cd44, Cdkn1a, and Cdkn2b g
300 o and in vitro analyses demonstrate that the regulatory regions within these two promoters contain th