ライフサイエンスコーパス: replica

1 sly split the colonies, creating a patterned replica.

2 ntial growth of both octahedron and catalyst replicas.

3 ilting, and from deep-etched rotary-shadowed replicas.

4 luation of gingival recession marks on stone replicas.

5 ular architectures to form conductive carbon replicas.

6 scratched into the anterior segments of the replicas.

7 by the reactive conversion into Si or TiO(2) replicas.

8 cy of ordinary replica exchange, using fewer replicas.

9 p, this approach mitigates the need for many replicas.

10 nter-conversion to one of the two chromosome replicas.

11 lture of primary in vitro colonic epithelial replicas.

12 sions and casts, the latter essentially foot replicas.

13 self-assembled organic phase into inorganic replicas.

14 gate sampling of 15 mus when summed over all replicas, allowing us to explicitly calculate the free-e

15 ons of mesoporous silicates, their nonsilica replicas and composites are discussed including the comb

16 The protocol has been set up on paint replicas and successfully tested on two historical sampl

17 ipants sequentially explored two bell pepper replicas and were required to judge whether they possess

18 st function, with a constraint centering the replicas around a driving assignment.

19 lting ensemble of structures with one or two replicas, as they are under the strong influence of soli

20 duct of the canonical distributions of these replicas at the different temperatures.

21 Comparison of the replica-average properties of the three proteins based o

22 In this work we use all-atom replica-averaged metadynamics (RAM) simulations with NMR

23 plex using NMR residual dipolar couplings in replica-averaged metadynamics simulations, we observe tw

24 ical shifts used as structural restraints in replica-averaged metadynamics simulations.

25 sing methyl chemical shifts as restraints in replica-averaged molecular dynamics (MD) simulations, wh

26 ipolar couplings as structural restraints in replica-averaged molecular dynamics simulations to deter

27 hairpin by incorporating NMR measurements as replica-averaged restraints in molecular dynamics simula

28 surface of RNase A using chemical shifts as replica-averaged restraints in molecular dynamics simula

29 in (Ca(2+)-CaM) using NMR chemical shifts as replica-averaged structural restraints in molecular dyna

30 milar to the results in FeSe/STO(001), clear replica bands are observed.

31 The observation of replica bands in single-unit-cell FeSe on SrTiO3 (STO)(0

32 , our angle-resolved photoemission data show replica bands separated by 100 meV from the main bands.

33 STO(110) bare surfaces, and observe similar replica bands separated by approximately the same energy

34 ation of patients' specific cardiac anatomic replicas based on volumetric imaging data sets obtained

35 orrelated with the signals registered (seven replicas) by means of the electronic nose and the electr

36 molecule, full-functional peroxidase enzyme replicas called "TAML activators".

37 In addition, metallic glass replicas can also be used as moulds for polymers or othe

38 placement are consistent with a recent exact replica computation for d = infinity, whereas some obser

39 lysis of immunogold-labelled freeze-fracture replicas confirms that GABA(B)Rs are highly expressed pr

40 We experimentally confirmed that replica copper tools are inferior to stone ones when eac

41 Using platinum replica electron microscopy (PREM), we have characterize

42 Using platinum replica electron microscopy in combination with electron

43 Using platinum replica electron microscopy in combination with immunogo

44 Super-resolution and immunogold platinum replica electron microscopy revealed dynamin along actin

45 Using correlative platinum replica electron microscopy, we characterize cytoskeleta

46 Using platinum replica electron microscopy, we characterized the cytosk

47 Here, using platinum-replica electron microscopy, we find that the early hour

48 Here, using platinum replica electron microscopy, we show that mitochondria i

49 AIS membrane "undercoat' imaged by platinum replica electron microscopy.

50 ve superresolution fluorescence and platinum replica electron microscopy.

51 ent quasiparticles, such as prominent phonon replica emission and modified valley-selection rules.

52 We introduce a replica exchange (parallel tempering) method in which at

53 constant-pH molecular dynamics with pH-based replica exchange (pH-REX) to gain insight into the struc

54 ed Born (GB) implicit solvent, combined with replica exchange (REX), might offer an optimal balance b

55 A replica exchange accelerated MC sampling strategy succee

56 ted molecular dynamics (MD) with Hamiltonian Replica Exchange and calculated binding free energy chan

57 cular dynamics trajectories from Hamiltonian replica exchange and targeted molecular dynamics simulat

58 allel-tempering metadynamics and temperature-replica exchange atomistic molecular dynamics simulation

59 AMBER and we have shown how multidimensional replica exchange can be used to significantly enhance th

60 Htt17Q17, and Htt17Q17P11 using Hamiltonian replica exchange combined with well-tempered metadynamic

61 In this work, we postprocess the replica exchange data using our roadmap-based MaxFlux re

62 ries of macrocycle structures generated from replica exchange dynamics to fully sample the conformati

63 ipping was further examined with Hamiltonian replica exchange free energy calculations revealing a st

64 The biasing potential-replica exchange MD simulations indicated significant di

65 range of urea concentrations, using all-atom Replica exchange MD simulations.

66 namics (MD) simulations, our method combines replica exchange MD with transition path theory (TPT) to

67 We used replica exchange molecular dynamics (MD) simulations to

68 puted by Poisson-Boltzmann (PB) equation and replica exchange molecular dynamics (MD).

69 Replica exchange molecular dynamics (REMD) is a popular

70 ree peptoid sequences using a combination of Replica Exchange Molecular Dynamics (REMD) simulation an

71 ut approximately 3 microsecond long all atom replica exchange molecular dynamics (REMD) simulations f

72 In this work, de novo replica exchange molecular dynamics (REMD) simulations o

73 tion of nuclear magnetic resonance (NMR) and replica exchange molecular dynamics (REMD) simulations t

74 Here, we use replica exchange molecular dynamics (REMD) simulations t

75 lity mass spectrometry (IMS-MS) and all-atom replica exchange molecular dynamics (REMD) simulations.

76 and tetra-acetylated H4 histone tails using Replica Exchange Molecular Dynamics (REMD) simulations.

77 ss spectrometry (IMS-MS) in conjunction with replica exchange molecular dynamics (REMD) to examine th

78 units are examined in explicit solvent using replica exchange molecular dynamics (REMD) which provide

79 Replica exchange molecular dynamics and an all-atom impl

80 In this article, we use exhaustive replica exchange molecular dynamics and an implicit solv

81 -resolution model with umbrella sampling and replica exchange molecular dynamics and performed altoge

82 nal space of the Cro dimer in solution using replica exchange molecular dynamics in explicit solvent.

83 This umbrella-sampling replica exchange molecular dynamics method performs a re

84 Size-modified PB agrees with replica exchange molecular dynamics much better than non

85 mechanisms for dissociation via Hamiltonian replica exchange molecular dynamics of the model fungal

86 nal landscape is conducted using temperature replica exchange molecular dynamics over three isochores

87 xchange molecular dynamics method performs a replica exchange molecular dynamics simulation along pep

88 Using replica exchange molecular dynamics simulations and an a

89 lected CTFs [Abeta(x-42); x=29-31, 39] using replica exchange molecular dynamics simulations and ion

90 Using replica exchange molecular dynamics simulations and the

91 Our replica exchange molecular dynamics simulations further

92 nal switch via extensive atomically detailed replica exchange molecular dynamics simulations in expli

93 Our NMR experiments and replica exchange molecular dynamics simulations indicate

94 Extensive replica exchange molecular dynamics simulations of BBL i

95 del parameterization is accomplished through replica exchange molecular dynamics simulations of short

96 his question using all-atom explicit solvent replica exchange molecular dynamics simulations of three

97 We first performed replica exchange molecular dynamics simulations of wild-

98 We carried out extensive replica exchange molecular dynamics simulations on 1BBL

99 In this work, we perform constant pH replica exchange molecular dynamics simulations on both

100 We performed replica exchange molecular dynamics simulations on the C

101 t membrane model is used in conjunction with replica exchange molecular dynamics simulations to reach

102 The replica exchange molecular dynamics simulations used an

103 sembly of the KFFE peptide was studied using replica exchange molecular dynamics simulations with a f

104 le of histone tails in the nucleosome, using replica exchange molecular dynamics simulations with an

105 Using all-atom explicit solvent replica exchange molecular dynamics simulations with sol

106 rpose, we have performed extensive atomistic Replica Exchange Molecular Dynamics simulations, elucida

107 lly reproduced to angstrom-level accuracy in replica exchange molecular dynamics simulations, includi

108 ss spectrometry experiments and solvent-free replica exchange molecular dynamics simulations.

109 lyzed statistically and compared to standard replica exchange molecular dynamics simulations.

110 ulations on NCBD to date: we use large-scale replica exchange molecular dynamics to explore the unbou

111 By using replica exchange molecular dynamics we carried out exten

112 All-atom explicit solvent model and replica exchange molecular dynamics were used to investi

113 Using replica exchange molecular dynamics with extensive sampl

114 d atom implicit solvent model and exhaustive replica exchange molecular dynamics.

115 ment of assembled structures using reservoir replica exchange molecular dynamics.

116 s obtained from reversible folding/unfolding replica exchange molecular-dynamics simulations of Trp-c

117 -angle x-ray scattering, as well as all-atom replica exchange molecular-dynamics simulations, we show

118 s within the mucus layers using an efficient replica exchange Monte Carlo sampling procedure.

119 en coupled with a simple energy function and replica exchange Monte Carlo simulation, our CNF method

120 Replica exchange Monte Carlo simulations using a coarse-

121 lymer lattice model and stochastic sampling (replica exchange Monte Carlo) for canonical ensemble sim

122 This method, known as Hamiltonian Replica Exchange Monte Carlo, outperforms the original M

123 ensemble search method known as Temperature Replica Exchange Monte Carlo.

124 DPs), we first combined implicit solvent and replica exchange sampling to calculate atomistic disorde

125 ational ensemble determined from multiplexed replica exchange simulations at the folding-transition t

126 r methodology involved extensive multiplexed replica exchange simulations of the target proteins with

127 ed in peptide binding, in turn verified with replica exchange simulations performed on a peptide boun

128 sing implicit solvent molecular dynamics and replica exchange simulations, we study the impact of ibu

129 chnique called free energy perturbation with replica exchange solute tempering (FEP/REST).

130 cular dynamics method combined with pH-based replica exchange to determine the pK(a) values of titrat

131 The application of GNEIMO with replica exchange to the study of fasciculin conformation

132 By combining Hamiltonian replica exchange with a finite-temperature string method

133 Here, we utilize a recently developed replica exchange with guided annealing enhanced sampling

134 Here we adapted the replica exchange with solute tempering method to sample

135 we have performed all-atom explicit solvent replica exchange with solute tempering molecular dynamic

136 se a modified version of the FEP/REST (i.e., replica exchange with solute tempering) sampling protoco

137 of H4 tail with/without K16Ac was sampled by replica exchange with solute tempering, and the free ene

138 simulation method, free energy perturbation/replica exchange with solute tempering, to two modificat

139 multi-state simulations: umbrella sampling, replica exchange, free energy perturbation simulations,

140 eve the computational efficiency of ordinary replica exchange, using fewer replicas.

141 is insight, we developed a novel Hamiltonian Replica Exchange-based method "SWISH" (Sampling Water In

142 es of UWHAM, its stochastic solver RE-SWHAM (replica exchange-like SWHAM)and ST-SWHAM (serial temperi

143 eneral tool to extract path information from replica exchange.

144 cs simulations, such as umbrella sampling or replica exchange.

145 t solvent molecular dynamics and Hamiltonian replica exchange.

146 ith a hybrid-solvent scheme and the pH-based replica-exchange (REX) protocol are applied to obtain th

147 We test the new method in replica-exchange continuous constant pH molecular dynami

148 Traditional molecular dynamics (MD) and replica-exchange MD (REMD) simulations of the well-chara

149 Replica-exchange MD simulations also support CTT release

150 ndamental problem, an approach combining the replica-exchange method and umbrella sampling (REM-US) w

151 A new, advanced sampling replica-exchange method has been developed to specifical

152 lly-atomistic, explicit solvent, temperature replica-exchange molecular dynamics (MD) simulations of

153 er of the PICK1-BAR domain using multiplexed replica-exchange molecular dynamics (MREMD) and canonica

154 face forces apparatus (SFA) measurements and replica-exchange molecular dynamics (REMD) simulations o

155 We used accurate all-atom replica-exchange molecular dynamics (REMD) simulations t

156 Within atomistic replica-exchange molecular dynamics (REMD), we develop a

157 Extensive samplings of full-atom replica-exchange molecular dynamics and coarse-grained s

158 Using isobaric-isothermal replica-exchange molecular dynamics and the all-atom exp

159 Using our previous replica-exchange molecular dynamics calcium-free simulat

160 Based upon replica-exchange molecular dynamics data, it was found t

161 NMR spectroscopy and replica-exchange molecular dynamics indicate that introd

162 55)) in a membrane environment determined by replica-exchange molecular dynamics simulation.

163 Here we use all-atom replica-exchange molecular dynamics simulations in gener

164 Replica-exchange molecular dynamics simulations of a hig

165 Here, we have performed extensive atomistic replica-exchange molecular dynamics simulations of the s

166 Replica-exchange molecular dynamics simulations show tha

167 Here, we use replica-exchange molecular dynamics simulations with an

168 by coarse-grained canonical and multiplexed replica-exchange molecular dynamics simulations with the

169 Replica-exchange molecular dynamics suggests that MDPs c

170 ocess, loop dynamics were investigated using replica-exchange molecular dynamics that yielded conform

171 With the use of a coarse-grained model with replica-exchange molecular dynamics, a longer timescale

172 ive cellulases with free energy perturbation/replica-exchange molecular dynamics.

173 oism, differential scanning calorimetry, and replica-exchange molecular dynamics.

174 oism, differential scanning calorimetry, and replica-exchange molecular dynamics.

175 We performed extensive replica-exchange molecular-dynamics simulations on Ala(3

176 ynamics of a beta-hairpin, using large-scale replica-exchange molecular-dynamics simulations with an

177 We performed replica-exchange molecular-dynamics simulations with umb

178 it (GB/SA) model of solvation, combined with replica-exchange molecular-dynamics simulations.

179 -level physical energy function to guide the replica-exchange Monte Carlo simulation search.

180 placements in the crystal unit-cells through replica-exchange Monte Carlo simulations, with the phasi

181 PKTYKREH interactions, which is supported by replica-exchange simulations for the Grb2-SOS1 complex m

182 rmational families determined by multiplexed replica-exchange simulations, from the 10th Community Wi

183 Here, we describe a "replica-extraction-transfer" (REX) technique that overco

184 ted into electronically transparent graphene replicas, fabricated using chemical vapor deposition of

185 We develop a full microscopic replica field theory of the dynamical transition in glas

186 from the tracer experiments conducted in the replica fracture illustrating the large effect that matr

187 RS2-GFP tracer experiments conducted in the replica fracture show that increasing specific discharge

188 E. coli RS2-GFP transport through the epoxy replica fracture, which capture for the first time the p

189 e analysis with different methodology of six replica from the same sample showed lowest variability (

190 ew species sequences using all the available replicas from model species.

191 erived aliphatic hydrocarbons, the petroleum-replica fuels, have emerged as promising alternatives to

192 ionality and take the limit as the number of replicas goes to zero.

193 The resulting gold replica has a feature size that is two orders of magnitu

194 lated pKa values based on 10-ns sampling per replica have the average absolute and root-mean-square e

195 Electron microscopy renders these graphene replicas highly transparent, revealing previously unobse

196 re we report on production of such petroleum-replica hydrocarbons in Escherichia coli.

197 nvestigate this, we combined freeze-fracture replica immunogold labeling of Cav2.1 channels, local [C

198 xin36 immunofluorescence and freeze-fracture replica immunogold labeling revealed a large variability

199 Freeze-fracture replica immunogold labeling revealed the presence of the

200 Using replica immunogold labeling, here we show that all CA1 P

201 EM replica immunogold labeling, however, demonstrated only

202 rinsic photoluminescence of the dark-exciton replica in monolayer WSe(2).

203 and occurs autonomously, with the number of replicas increasing exponentially over time without the

204 oint distribution of the composite system of replicas is the normalized sum of the symmetrized produc

205 nuclei by a highly sensitive freeze-fracture replica labeling technique.

206 s 3D quantitative imaging or freeze-fracture replica labeling.

207 f statistical physics based on the so-called replica method.

208 to create arrays of individually addressable replica microbial cultures.

209 A replica molded polydimethylsiloxane (PDMS) microfluidic

210 dual functions of barbs were reproduced with replica molded synthetic polyurethane quills.

211 ion polymers, and can be used as masters for replica molding

212 hylene glycol) (PEG) microparticles based on replica molding (RM) for highly uniform and robust nucle

213 in thin rubber sheets were fabricated using replica molding and were subjected to stretching, foldin

214 ns on gold-coated and glass substrates; (ii) replica molding for fabrication of microfluidic devices

215 During the replica molding process, a uniaxial force is applied to

216 tolithography and requires no silicon wafer, replica molding, and plasma bonding like microfluidic de

217 Here, we used replica molecular-dynamics simulations and network theor

218 The platform was fabricated using replica moulding technology in PDMS patterned by high-as

219 We applied the single-replica multiple-state transition-interface sampling met

220 ed as masters for the fabrication of inverse replica nanochannels in a special formulation of PDMS.

221 By performing dozens of short simulation replicas near the rupture event, and analyzing dynamic n

222 im here was to conduct a multicentre, 1 year replica of a clinical trial in patients with one of four

223 ve infection, a retrovirus must insert a DNA replica of its genome into host cell chromosomal DNA.

224 ntative of the experimental data after 60 ns/replica of simulation time.

225 demonstrating that it converges to faithful replica of test functions more rapidly than competing me

226 atural rock fracture and a transparent epoxy replica of that same fracture.

227 ith hydrofluoric acid yields a free-standing replica of the internal and external native frustule mor

228 TP53 gene sequences has offered a humanized replica of the TP53 gene in a murine genetic environment

229 monophasic action potential (MAP) is a near replica of the transmembrane potential recorded when an

230 A gold-coated replica of this surface elicited an optical response tha

231 tants with lower adaptabilities) to multiple replicas of a regimen of positive selection and then det

232 Nano-antennas are replicas of antennas that operate at radio-frequencies,

233 components and with functionalized polymeric replicas of biofilm microstructure.

234 Eight replicas of cheese were produced and a total of 48 chees

235 lysis to form electrically conductive carbon replicas of complete organisms.

236 ring with phase change to create solid metal replicas of complex bio-based features.

237 of photoluminescence peaks as valley phonon replicas of dark trions.

238 hain reaction (PCR) is performed to transfer replicas of desired STR targets from the single-cell gen

239 and maxillary master casts, and eight stone replicas of each master cast were produced.

240 that brain systems create and use inhibitory replicas of excitatory representations for important cog

241 Replicas of full response curves performed with 10(0)-10

242 s - Kondo droplets - exemplifying nanoscopic replicas of heavy-fermion materials.

243 rotextured films, 3D shapes, and metal oxide replicas of natural biotextures.

244 it remains a challenge to create artificial replicas of natural photonic structures.

245 be restabilized via formation of inhibitory replicas of newly formed excitatory connections.

246 espite the overall fitness differences, some replicas of one mutant strain at passage 50 showed fitne

247 uch-based responses, we used both biomimetic replicas of petal surfaces and isogenic Antirrhinum line

248 iffractive optical effects produced by epoxy replicas of petals with folded cuticles persist and indu

249 Here, we report on pyritized replicas of the iconic autotrophic Gunflintia-Huroniospo

250 zed in vitro generating nanopatterned silica replicas of the microring structures.

251 unction given by a sum of a finite number of replicas of the original cost function, with a constrain

252 eal that regenerated limbs are high fidelity replicas of the originals even after repeated amputation

253 TAML activators are exceptional functional replicas of the peroxidases and cytochrome P450 oxidizin

254 models were assessed by simulating multiple replicas of the phase III studies.

255 Freeze-fracture replicas of the PM of Orai1-transfected cells showed ext

256 The idea is to run several replicas of the system in parallel at different temperat

257 eory from statistical mechanics, we consider replicas of the system to tune the dimensionality and ta

258 pic colloid particles fabricated as negative replicas of the target cells which involve templating of

259 d with a set of organic molecules, for which replicas of their (1)H NMR spectra were generated.

260 o have full control (e.g. through a software replica) of all steps in the measurement chain.

261 are (preprocessing, simultaneous analysis of replicas, of different conditions, ROI calculation, mult

262 erature oxidative calcination to form silica replicas or reductive pyrolysis to form electrically con

263 EBMetaD does not require multiple simulation replicas or the introduction of Lagrange multipliers, an

264 f, providing a broad range of versatility to replica other biotargets with different molecular struct

265 L measurements unveil a circularly-polarized replica peak located below the dark exciton by 21.6 meV,

266 lecular dynamics with extensive sampling (16 replicas per sequence and 600 ns per replica), we invest

267 electrodeposited gold nanowires in a master-replica process and characterized with scanning electron

268 double LPNE fabrication method, this master-replica process was also used to create a large two-dime

269 model approach assimilates information from replica QMM assays, improving reliability and inter-assa

270 ur discovery and understanding of the phonon replica reveals a chirality dictated emission channel of

271 observables, the ensembles of more than two replicas show larger orientational variations similar to

272 to stochastic outcomes, with some simulation replicas showing clearance or control (treatment success

273 Multiple replica simulations of ATP-, ADP-, and inhibitor-bound s

274 nucleic acid backbone that are added in the replica simulations to promote transitions of the most c

275 lm or agar culture; the metabolites are then replica "stamped" onto the NIMS surface.

276 We report the observation of replica symmetry breaking (RSB) in a weakly scattering o

277 us HCl followed by 5% H2O2 yielded a titania replica that retained the morphology of the parent HKUST

278 For all replicas, the 3D optical method showed small standard de

279 Inspired by replica theory from statistical mechanics, we consider r

280 The replica theory of glasses predicts that in the infinite

281 pling theory, density functional theory, and replica theory, all miss this crucial element.

282 By bringing together results from replica theory, cavity reconstruction, void percolation,

283 s (REMD) simulations on the microseconds-per-replica timescale are used to characterize the structura

284 th transmission electron microscopy of metal replicas to locate proteins on the landscape of the cell

285 on the order of hundreds of nanoseconds-per-replica toward ensembles that yield good agreement with

286 uperresolution light microscopy and platinum replica transmission electron microscopy (TEM) to determ

287 osites (CSCs) and their conversion to silica replicas using mammalian cells as scaffolds to direct co

288 ro spray measurements in 3D-printed anatomic replicas using the gamma scintigraphy technique.

289 pumping reveal energy-gain and -loss Floquet replica valence bands that appear instantaneously in con

290 Each replica was scanned 10 times with a 3D optical system, a

291 The PDMS replica was then oxygen plasma-bonded to a glass substra

292 rfaces or on flexible, inexpensive polymeric replicas was discovered.

293 the original repetitive waveforms into fewer replica waveforms.

294 ing (16 replicas per sequence and 600 ns per replica), we investigate the structure of the monomeric

295 Microporous titania replicas were made from the MOF template HKUST-1 by dehy

296 The modified replicas were then scanned 10 times, and 3D datasets wer

297 n in electron micrographs of freeze-fracture replicas with periodicities of 16 and 12 nm, respectivel

298 These include scaled replicas with sub-100-nm-level control of feature sizes

299 (III)-TAML activators as miniaturized enzyme replicas with the potential to greatly expand the techno

300 On average, one of two replicas yielded positive growth with 2.5% NaOCl and one