ライフサイエンスコーパス: repository

1 od Liver Disease Research Network (ChiLDReN) repository.

2 uted through the Python Package Index (PyPI) repository.

3 ated and deposited in the OntoChina ontology repository.

4 the SNP2SIM workflow are available (SNP2SIM Repository.

5 ely available via the website and the GitHub repository.

6 them to a historic dataset or a growing data repository.

7 ology in support of the NeuroMorpho.Org data repository.

8 s open source software from the Bioconductor repository.

9 S cell clone (C57BL/6N background) from KOMP repository.

10 GGandMetacoreDzPathwaysGEO R package and GEO repository.

11 ware modules and publicly-available software repository.

12 via links to files stored remotely on an FTP repository.

13 ll lines that are available from the Coriell repository.

14 y will be openly available from the software repository.

15 indings deposited in the human protein atlas repository.

16 g GHG fluxes, but lack a central database or repository.

17 example code are available in an open online repository.

18 on is available at the aforementioned GitHub repository.

19 density functional theory (DFT) calculation repository.

20 nd other depositors into a single electronic repository.

21 biomarkers recorded in the centralized data repository.

22 provide the foundation for a global TBM data repository.

23 lable at github.com/aromanel/EthSEQ and CRAN repository.

24 dependently using the Systematic Review Data Repository.

25 ifest of datasets stored in a remote storage repository.

26 tional Heart, Lung, and Blood Institute data repository.

27 ilable as an R package at the CRAN R package repository.

28 as an R package via the Bioconductor package repository.

29 ies to improve the annotation quality of our repository.

30 rom the Python package index or the bioconda repository.

31 er of datasets from the UCI machine learning repository.

32 he required software is provided on a Github repository.

33 a cannot be shared or sent to a central data repository.

34 it with their manuscript or post to a public repository.

35 Genetic association used 2 EoE genotype repositories.

36 ocess and parse data contained in large data repositories.

37 ease endophenotypes from six brain bank data repositories.

38 for final disposal in deep-mined geological repositories.

39 search across several public bioinformatics repositories.

40 y and NGS data from large publicly-available repositories.

41 mzXML format and data from public proteomics repositories.

42 access to high-throughput microarray and NGS repositories.

43 ongside genome annotation data from multiple repositories.

44 ) and Genotype-Tissue Expression (GTEx) data repositories.

45 n easily integrate data from biological data repositories.

46 with known AMR sequences in existing online repositories.

47 vering complex relationships in such diverse repositories.

48 abases, pharmacology resources, and bioassay repositories.

49 ity Purification (TRAP) and CREB-target gene repositories.

50 rginine catabolism into alternative nitrogen repositories.

51 integrated from well-established, community repositories.

52 ther locally stored or available from public repositories.

53 lines led to the development of several data repositories.

54 and North America has mostly been driven by repositories.

55 Imaging, Neurocognition, and Genetics) data repositories.

56 ASD (5.2-57 years of age) from two multisite repositories.

57 eposited in publicly available databases and repositories.

58 s and underrepresented in plant conservation repositories.

59 st established ones are (1) manually curated repositories, (2) interactions derived from ChIP-seq bin

60 eq data from the LIBD Postmortem Human Brain Repository (90 controls, 74 schizophrenia cases; all Cau

61 and that may proliferate in public database repositories affecting all downstream analyses.

62 Data from published repositories also show that sesquizygosis is a rare even

63 The repository also provides a code example for leveraging p

64 ithin a diagnostic setting and combined data repository analysis identified a novel gene.

65 olicies and guidelines by reviewing national repositories and by contacting experts to systematically

66 tudies Program have also enhanced their data repositories and data sharing resources.

67 ve generated abundant genomic data in public repositories and effective analytical approaches are cri

68 nd enable knowledge integration across model repositories and experimental data stores.

69 cribes the most common publicly available MG repositories and highlights their main features and stre

70 f dependent packages, over 100,000 dependent repositories and millions of downloads per year.

71 Neuroimages and biospecimens were stored in repositories and outcome was assessed at 6 months after

72 ,000 bacterial genomes from all major genome repositories and put them in a fast and easy-to-use data

73 need to generate appropriate gene annotation repositories and resources.

74 The distributed nature of PDX repositories and the use of different metadata standards

75 The software can be downloaded from CRAN repository and also from the GitHub project page.

76 lood and Marrow Transplant Research (CIBMTR) repository and database, in which nearly all patients un

77 or a research program to develop an HMC data repository and database.

78 rage of unprocessed MS data in the GlycoPOST repository and glycan structure registration using the G

79 f Diabetes and Digestive and Kidney Diseases Repository and included in our analyses: 2450 for model

80 By linking public data repository and private data, GsmPlot can spark data-driv

81 usable (FAIR) by submitting them to a public repository and sharing them with the research community.

82 te of Diabetes and Digestive Kidney Diseases repository and tested for seven markers of tubular prote

83 reducing the footprint of nuclear geological repositories, and (c) reducing the time required for the

84 arching of 10 journals, nine gray literature repositories, and forward and backward citation chasing.

85 come cognitive fixation, scale to large idea repositories, and support complex problems with multiple

86 of California, Irvine (UCI) Machine Learning Repository, and a clinical data set built to determine s

87 compared the results with those in a public repository, and applied other filtering criteria to iden

88 gent production tracking system, screen data repository, and portal to the community.

89 In large DNA sequence repositories, archival data storage is often coupled wit

90 However, data from public repositories are difficult to reprocess and reanalyze.

91 tive electron scattering revealed that these repositories are equivalent to molar concentrations of d

92 Biological databases and repositories are incrementing in diversity and complexit

93 Links to repositories are provided from the PDX Finder search res

94 matically retrieve an accession from the SRA repository at the NCBI.

95 ete data require pooling data into a central repository before analysis, which is not feasible in DHD

96 studies using datasets from the TCGA and UCI repositories, binomialRF showed computational gains (up

97 serve not only as a timeline and information repository but also as a baseline to define outstanding

98 on article, I discuss how the nature of such repositories can subject participants whose data are 'ba

99 The QBB repository can provide data and biological samples suffi

100 (GTEx) project, which is another large-scale repository cataloging gene expression from healthy indiv

101 We present an eternamoves-large repository consisting of 1.8 million of player moves on

102 With 21 participating algorithms and a data repository consisting of 13 data sets from various micro

103 As many data repositories continue to grow, there is an urgent need f

104 e, we detail new content and features in the repository, continuing the original effort to connect ea

105 ional techniques (i.e., public code and data repositories, continuous integration, containerization)

106 ere identified in the COloRECTal cancer data Repository (CORECT-R).

107 e amount of data has reached petabyte scale, repositories do not allow one to perform online sequence

108 ng and the availability of large online data repositories (e.g. The Cancer Genome Atlas and Trans-Omi

109 ng data sets are usually deposited in public repositories (e.g., the European Nucleotide Archive) to

110 The iProX repository employs a web-based proteome data submission

111 The NASR is a clinical and biospecimen repository established in 2011 to promote SUDEP research

112 are routinely uploaded, there are no formal repositories for crop SNP array data.

113 s, and abstracts to highly trafficked public repositories for each content type.

114 Although there are many public repositories for sequencing data, which are routinely up

115 blishment of consortia and digital pathology repositories for the collection, analysis and integratio

116 ially habitable environments and as possible repositories for the preservation of organic matter.

117 research, we created an extensive PRS online repository for 35 common cancer traits integrating freel

118 MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR,

119 Here, data from the AFLOW repository for ab initio calculations is combined with Q

120 BioSamples database is now the authoritative repository for all INSDC sample metadata, an ELIXIR Depo

121 operation for more than 5 years as a public repository for archiving circular dichroism spectroscopi

122 cation of our study, we propose to develop a repository for automatic API testing and sustainability

123 Finally, KinaMetrix also serves as a repository for both small molecule substructures that ar

124 Lake City, UT, USA, was used as the central repository for case validation, public reporting, and sy

125 Here, we present the first public repository for ChIP oligonucleotides that have been veri

126 The prediction results are stored in a repository for community access.

127 e propose to build a "Noah's Ark" biological repository for corals that taps into the network of the

128 BDSS then queries a metadata repository for curated data transfer mechanisms and opti

129 T biosynthesis and also establish a valuable repository for deciphering various structural, rate limi

130 The GDC is (i) a data repository for downloading data that have been submitted

131 solation, the Southern Ocean stands out as a repository for extant marine organisms with ancient trai

132 A and thus provides a larger and more secure repository for genetic information.

133 easyGWAS is also a public data repository for GWAS data and summary statistics and alre

134 e datasets reuse, we created the JingleBells repository for immune-related scRNA-seq datasets ready f

135 The Biological General Repository for Interaction Datasets is an open access da

136 agmas represent a powerful yet underutilized repository for interrogating crustal recycling through g

137 Submission to the MetaboLights repository for metabolomics data currently places the bu

138 UK Biobank is the world's largest repository for phenotypic and genotypic information for

139 In conclusion, our data represent a reliable repository for potential substrates of the HPV-16 and HP

140 The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, In

141 this paper are also available at the Github repository for reproducibility purposes.

142 so be uploaded and viewed in Panorama, a web repository for Skyline documents that can be configured

143 It is a web-accessible repository for storing and sharing systems biology resea

144 n Earth's lower mantle and could provide the repository for the atmosphere's missing Xe.

145 00 pediatric cancer patients and serves as a repository for the expert-reviewed results.

146 CropSNPdb provides a useful repository for these data, which can be applied for a ra

147 d a stable, highly accessible, user-friendly repository for this information, providing the scientifi

148 Genetic diversity provides a rich repository for understanding the role of proteostasis in

149 GNPS-MassIVE is a public data repository for untargeted MS(2) data with sample informa

150 t of transcriptomic data available in public repositories from different sources.

151 ific method to enable construction of a data repository from a veterinary hospital that would be usef

152 ork are available for download from the NCBI repository: ftp://ftp.ncbi.nih.gov/genomes/.

153 ften underrepresented in large sequence data repositories, further impairing identification and separ

154 Center for Biotechnology Information (NCBI) repositories: Gene Expression Omnibus (GEO) and Sequence

155 chnology Information Gene Expression Omnibus repository, GSE104778.

156 omparison among common publicly available MG repositories guides the community to select the most app

157 Sharing of research data in public repositories has become best practice in academia.

158 Sequence repositories have few well-annotated virus mature peptid

159 argillaceous rock considered as a potential repository host.

160 y extract useful bioassay data from a public repository (i.e., PubChem) and assess its ability to pre

161 rogeneous biomedical network derived from 12 repositories; (ii) from a methodological perspective, we

162 push toward sharing data sets through public repositories in many research fields where MSI is common

163 knowledge base that has been assembled from repositories in the fields of genomics, proteomics, gene

164 1990-2015 from four publicly available data repositories in the USA, Mexico, Brazil, and Colombia.

165 ntic description of mathematical models, and repositories in which to archive, share, and discover mo

166 nder conditions relevant for a nuclear waste repository in crystalline rock.

167 re not always available to host a geological repository in every nuclear waste-generating country, bu

168 en requested to submit data into a biometric repository, in parallel with systems used by solid organ

169 range of other core knowledgebases and data repositories including ChEBI and MetaboLights.

170 to download data and metadata from multiple repositories, including the Sequence Read Archive, the M

171 Big data repositories, including those for molecular, clinical, a

172 provides interactive access to the knowledge repository, including genomic coordinate searches of the

173 MassIVE.quant is a repository infrastructure and data resource for reproduc

174 the wealth of information contained in data repositories is difficult due to significant barriers in

175 rtoire, and the amount of BCR data in public repositories is growing.

176 e amount of data being deposited into public repositories is increasing rapidly.

177 This global data repository is used by millions of scientists and educato

178 ates to the schema, the data, and the online repository itself.

179 Our models, available in the repository Kipoi, apply to variants including indels dir

180 r enriching metadata in nucleotide sequences repositories like National Center of Biotechnology Infor

181 Genomic data repositories like The Cancer Genome Atlas, Encyclopedia

182 und 50% and generated the Liver Cancer Model Repository (LIMORE) with 81 cell models.

183 ational Trauma Data Bank is a voluntary data repository managed by the American College of Surgeons,

184 for all stakeholders: researchers, funders, repository managers, research administrators, data libra

185 d on entire files retrieved from the MassIVE repository, MassComp achieves on average a 59% size redu

186 For example, the MS repository MassIVE contains more than 123TB of data.

187 n example, we discuss how publicly available repositories may benefit data producers and end-users al

188 have been collected and named by the online repository miRBase.

189 from the USDA-ARS National Clonal Germplasm Repository (NCGR panel) in the USA.

190 g scientific endeavors are creating big data repositories of data from millions of individuals.

191 ign, methodology of data collection, and the repositories of data, biospecimens, and ultrasound image

192 diagnostic targets; by creating and sharing repositories of data, reagents, and well characterised s

193 ging and associated comorbid conditions; (2) repositories of deeply phenotyped physiological data and

194 These studies have produced extensive repositories of genetic variation and trait measurements

195 e not currently well represented in existing repositories of immune alleles.

196 Global herbaria are the greatest repositories of information on the plant kingdom.

197 tabolic network reconstructions (GENREs) are repositories of knowledge about the metabolic processes

198 Several large public repositories of microarray datasets and RNA-seq data are

199 shing, creating enormous, publicly available repositories of multi-omics data.

200 ins indicate that they contain metal and are repositories of noble gases.

201 temporary, rather than as permanent, natural repositories of oil sands contaminants.

202 (e.g., bentonites) in future deep geological repositories of radioactive waste can influence the migr

203 ndards for bioinformatics pipelines, curated repositories of resistance-causing variants, phylogeneti

204 lso a pressing need for the establishment of repositories of standardised HBV reagents and protocols

205 e availability of accurate and comprehensive repositories of TCR and Ig alleles.

206 Uniquely, an immense repository of 18,000 secreted proteins encoding 137 diff

207 of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose somatic modifications hav

208 rna puzzles as well as an eternamoves-select repository of 30,477 moves from the top 72 players on a

209 The NCIC established a real-time repository of all CRE carriers and events of acquisition

210 gene expression changes using the invaluable repository of archival renal biopsies and discovered two

211 this regard, there is a need to establish a repository of biospecimens, which represent appropriate

212 technology has been used to generate a large repository of breast cancer organoids.

213 The data from this study provides a large repository of chimeric RNAs present in non-diseased tiss

214 ecific approaches to construct a canine data repository of clinical data collected during routine car

215 ienophiles and eventually generating a small repository of complex molecules, thus exemplifying how s

216 erited disorders, but grew to be the primary repository of curated information on both genes and gene

217 ls, BioModels has become the world's largest repository of curated models and emerged as the third mo

218 ve infection or after recovery and created a repository of currently >14 million B and T cell recepto

219 ntext by reciprocal linking with dictyBase-a repository of Dictyostelium genomic data.

220 e majority of Antarctica and is an important repository of dissolved organic matter (DOM).

221 l many participants to create an open-access repository of genome, health and trait data for research

222 ve Research Database is a publicly available repository of granular data from more than 200,000 ICU a

223 oved label, and creates a publicly available repository of knowledge for future decision-making.

224 ture of the mental lexicon (i.e., the mental repository of lexical and conceptual representations).

225 o proceed, we developed CellPhoneDB, a novel repository of ligands, receptors and their interactions.

226 , the main aim of this work was to develop a repository of literature-reported DMET abundance data in

227 eukaryotic linear motif (ELM) resource is a repository of manually curated experimentally validated

228 netic Resonance Data Bank (BMRB) is a public repository of Nuclear Magnetic Resonance (NMR) spectrosc

229 25 training chapter-based) developed from a repository of over 2500 unique image sets of ROP.

230 Overall, our approach provides a repository of protease structures with annotated data, a

231 Our results provide, for the first time, a repository of quantitative proteomic data on the surface

232 In this article, a model and a repository of radiologic CDEs is described, and three im

233 he RNA Structurome Database, a comprehensive repository of RNA secondary structural information that

234 Supplementary Material and from BioModels, a repository of SBML models, containing CellDesigner marku

235 Additionally, it is challenging to search a repository of short-read data using relational logic and

236 l lines (Hs578T and MDA-MB-231) to provide a repository of signaling determinants that functionally d

237 Together, we have built the TB Portals, a repository of socioeconomic/geographic, clinical, labora

238 world's most comprehensive openly accessible repository of summary-level GWAS association information

239 ble in 171 patients belonging to the imaging repository of the European DLB Consortium.

240 A repository of the RBPome and proteome in kidney tubular

241 dscape of drugs summarizing the entire LINCS repository on a genomic scale meaningfully.

242 to share step-by-step protocols in protocol repositories or journals.

243 tween 2016 and 2019, were not deposited in a repository or were simply inaccessible.

244 In contrast to other repositories, our database takes into account the subuni

245 The structure is provided in the PDB-DEV repository (PDBDEV_00000030).

246 resources such as the Patient-Derived Models Repository, PDXNet and EurOPDX.

247 g the ability to collect data from metabolic repositories, perform flux balance analysis, and to view

248 s are freely available in the Physiome Model Repository (PMR).

249 o participate in the genomics collection and repository proposal.

250 platforms continue to be deposited in public repositories provide an ever-growing, valuable resource

251 These protein interaction repositories provide meaningful structural information o

252 we outline the structure and content of our repository, provide procedures for inferring cell-cell c

253 nity to SARS-CoV-2 with the actively updated repository providing a resource for the scientific commu

254 is an example for a large-scale genomic data repository providing hundred thousands of high-dimension

255 By hosting manuscript repositories publicly, such as on GitHub, multiple autho

256 nstitute on Aging (NIA)-funded national data repository (reflecting samples collected between 1984-20

257 alized across thousands of online databases (repositories, registries, and knowledgebases).

258 the industrial B25 Bavarian bentonite under repository-relevant conditions.

259 Although public repository requirements are aimed at researchers and des

260 electrons above the TC, playing an 'electron repository' role in maintaining high figure of merit ZT.

261 romatography (LC)-MS(2) experiment or at the repository scale.

262 en groups of samples, and metadata-filtered, repository-scale molecular networking.

263 Though datasets are often hosted by public repositories, scientists must rely on inconsistent annot

264 Initial combined database and repository searches yielded 3247 documents.

265 The repository should facilitate future work toward a predic

266 The All of Us data repository should permit researchers to take into accoun

267 s of literature using keywords is enabled by repositories such as PubMed, filtering relevant articles

268 Regarding large data repositories such as The Cancer Genome Atlas, available

269 itutes of Health (NIH) has supported several repositories such as the database of Genotypes and Pheno

270 Biomedical repositories such as the UK Biobank provide increasing a

271 Rather than developing a new normative data repository that may require considerable of resources an

272 dbGaP is an online repository that provides access to large-scale genetic a

273 FINDbase is a comprehensive data repository that records the prevalence of clinically rel

274 k Open Resource 2.0 (SIGNOR 2.0) is a public repository that stores signaling information as binary c

275 y in routine data such as the use of imaging repositories, the standardization of radiomic features,

276 wo of these species had no genomes in public repositories, thereby representing novel taxa.

277 lished articles and parse query results from repositories to determine if the datasets remain private

278 use data curated from literature and online repositories to examine trait-based patterns of gut micr

279 n download a subset of data files from these repositories to perform exploratory data analysis.

280 r to the goal of a centralized physiological repository to foster transparency, rigor and reproducibi

281 are written in Markdown and stored in a Git repository to precisely track changes over time.

282 -based glycomics information into the public repository UniCarb-DR.

283 e bins (SGBs), 77% without genomes in public repositories (unknown SGBs [uSGBs]).

284 detection across three independent AD brain repositories using (1) RNA sequencing (RNA-seq) datasets

285 We validated our data repository using a gold standard of known breed predispo

286 wo-phase method to construct a clinical data repository using canine data obtained during routine cli

287 Biosynthetic Gene Cluster) Data Standard and Repository was established in 2015 to enable curation an

288 tment of Defense Military Health System Data Repository was queried for individuals diagnosed with ca

289 Using the Department of Defense Serum Repository, we analyzed PLA2R-AB in multiple, 1054 longi

290 Google scholar, and Ethiopian Universities' repositories were searched following the Preferred Items

291 esign and data from two US healthcare claims repositories were used.

292 from the Myocardial Applied Genomics Network repository were examined for NP system gene expression.

293 is in the context of publicly available data repositories, where the family of hypotheses to be teste

294 rity), with 83 taxa absent from conservation repositories, while 93.1% of the plants were equivalentl

295 ependents in the Military Health System Data Repository who underwent uncomplicated laparoscopic appe

296 The cohort database and the repositories will become global resources to answer crit

297 To link and harmonize different knowledge repositories with respect to isotopic data, we propose a

298 y number of samples or projects from a given repository with a single grabseqs command.

299 We identified 184 patients in our repository with renal agenesis and analyzed their exome/

300 om our and other studies available on public repositories, with the goal of identifying the persisten