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1  polymorphisms that are fully validated with resequencing.
2 nd evaluated the best candidate using genome resequencing.
3 and untranslated regions of these 3 genes by resequencing.
4 g gene expression (RNA-seq), exome or genome resequencing.
5 sity within these strains using whole-genome resequencing.
6 ation offers a cost-effective alternative to resequencing.
7 covery and genotyping in long-range targeted resequencing.
8 s the in silico analyses behind whole-genome resequencing.
9 cy of a dataset and alignment strategy after resequencing.
10 ileptic encephalopathies to undergo targeted resequencing.
11 repertoire of variation in NLRP1 by deep DNA resequencing.
12 n neurodevelopment were investigated by exon resequencing.
13 sed to address the need for targeted genomic resequencing.
14 e genetic contribution of the QTL to cIMT by resequencing.
15 e of pistachio as well as large-scale genome resequencing.
16 ssociation approach complemented by targeted resequencing.
17                                     Here, by resequencing 1,506 wild sunflowers from 3 species (Helia
18                                              Resequencing 129 Caucasian derived CRCs confirmed a 15-g
19                                      We also resequence 146 lines of diverse germplasm and build a va
20                                           We resequenced 199 Brassica rapa and 119 Brassica oleracea
21 lation levels in common conditions, and then resequence 24 autotetraploid individuals from three popu
22                                           We resequenced 26 candidate genes in 4,716 additional cases
23                                           We resequenced 28 genomes from experimentally evolved S. ce
24 e potential of the method, we simultaneously resequenced 33 clinically informative cancer genes in ei
25                                     Here, we resequence 588 B. napus accessions.
26 nomes of six ixodid tick species and further resequenced 678 tick specimens to understand three key a
27                                      We also resequenced 89 Ananas genomes.
28                                 Moreover, we resequence 93 cultivars and 14 wild P. vera genomes and
29 understand the mechanism of their action, we resequenced a 455-kb region in type 1 diabetic patients
30 (minor allele frequency <5%) variants, using resequencing all 13 exons and exon-intron boundaries of
31                             The whole genome resequencing analyses have now been extended to the curr
32                                              Resequencing analysis identified seven single nucleotide
33                              High-throughput resequencing analysis of selected mutants resolved speci
34            Further, comparative whole-genome resequencing analysis of USVL531-PMR, USVL677-PMS and fo
35                                        A new resequencing analysis of weedy rice (Oryza sativa L.) bi
36 e describe Karyogene, an integrated targeted resequencing/analytical platform that detects nucleotide
37                                           We resequenced and analyzed 994 pearl millet lines, enablin
38               To address these questions, we resequenced and reassembled the genome of H. dujardini,
39 icant tobacco smoke exposure using deep gene resequencing and alpha-1 antitrypsin concentrations.Meth
40                                              Resequencing and analyzing 31 whole genomes of O. sinens
41                                      Genomic resequencing and complementation tests were used to iden
42                                Using genomic resequencing and complementation, we identified OsCADT1
43                            Using whole-exome resequencing and high-throughput mutation analysis, we i
44 tly been performed, but required both genome resequencing and MethylC-seq datasets.
45                                              Resequencing and population genomics reveals high levels
46  whole-genome de novo sequencing relative to resequencing and provide valuable genetic resources that
47 m1a avirulence combined with pathogen genome resequencing and RNA sequencing (RNAseq) identified AvrP
48 rom a total of 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessio
49  here, would greatly help in the chloroplast resequencing and search for additional genetic markers u
50  variants in SORL1 were detected by targeted resequencing and validated by genotyping in additional f
51  Gene-based-statistical analyses of targeted resequencing and WGS were performed.
52  to microsatellite, common variant, targeted resequencing and whole-exome and -genome data, specifica
53          The genomes of EHA105 and K599 were resequenced, and genome-wide off-target analysis was app
54 ution approach with infection assays, genome resequencing, and global gene expression analysis to stu
55 tze River basin phenotypically and by genome resequencing, and we show that this weed in rice paddies
56  strains (Ensifer meliloti) via a select-and-resequence approach can be used to efficiently assay hos
57                         Using a whole-genome resequencing approach combined with a reference sequence
58                 We have developed a targeted resequencing approach referred to as Oligonucleotide-Sel
59                      We use exon capture and resequencing approaches to identify single-nucleotide po
60                                 Using genome resequencing approaches, we identified insertion sites a
61 ork demonstrates the utility of whole genome resequencing as a cost effective, direct, and efficient
62 on of positional cloning, population genomic resequencing, association mapping and developmental data
63 b-nosed monkey (Rhinopithecus roxellana) and resequencing at 30x coverage of three related species (R
64 lling mutations from large cohorts of deeply resequenced cancer genes.
65                                     Circular resequencing (CirSeq) is a novel technique for efficient
66                                       Genome resequencing clarifies two groups of mango varieties, di
67 extended to deal with missing phenotypes and resequence data with rare variants, offering a feasible
68    To efficiently facilitate large-scale NGS resequencing data analysis of genomic variations, we hav
69 thods to measure coancestry and fitness from resequencing data and use them in population management.
70 s an example application, yeast and silkworm resequencing data are analyzed with SWAV.
71               Here, we leverage whole-genome resequencing data available for ~300 individuals of Arab
72 S data easily, we have also developed an NGS resequencing data browser within SoyKB to provide easy a
73 rred fine-scale genetic maps from population resequencing data for two bird species: the zebra finch,
74 enomics to S. mansoni based on high-coverage resequencing data from 10 global isolates and an isolate
75 investigate these processes using high-depth resequencing data from 31 maize landraces spanning the p
76                         We used whole-genome resequencing data from 34 butterflies to detect duplicat
77 Vs) previously identified using whole genome resequencing data from 61 additional inbred lines were e
78 e clustering analysis using the whole genome resequencing data from a collection of 106 diverse soybe
79 on bean (Phaseolus vulgaris) and genome-wide resequencing data from both wild and domesticated access
80 nome for blackcaps and obtained whole genome resequencing data from individuals across its breeding r
81 nce genome for the rabbit and compared it to resequencing data from populations of wild and domestic
82 lenges, ultimately, additional data, such as resequencing data from populations, will provide more po
83                      We used next-generation resequencing data from this experiment to examine genome
84                               Using targeted resequencing data from tumor specimens with orthogonally
85 s model using whole genome and transcriptome resequencing data in the guppy, a model for sexual selec
86                         We used whole-genome resequencing data of 882 trees with more than 6.78 milli
87       In this study we compared whole-genome resequencing data of Atlantic herring populations from b
88 n available, and are also applicable to deep-resequencing data of GWAS loci.
89                              We analyzed the resequencing data of Sus cebifrons, a highly endangered
90                                 We use these resequencing data to establish marker trait associations
91                                 Whole-genome resequencing data were used to generate high-resolution
92 or generating and processing next-generation resequencing data, discuss the influence of errors and b
93          Strikingly, in 4 of 15 regions with resequencing data, multiple disjoint NCO tracts cluster
94 forward simulation, guided by empirical deep resequencing data, to model the genetic architecture of
95 ogether with Hi-C, RNA-seq, and whole-genome resequencing data, to study key features of genome biolo
96                Using whole-genome population resequencing data, we estimated the population-scaled re
97                           Using whole-genome resequencing data, we identified variants in two proxima
98 ocations at base-pair resolution in targeted resequencing data.
99 e applied to whole exome, genome or targeted resequencing data.
100 t copy number variation analyses on multiple resequencing datasets in a user-friendly and seamless wa
101 elMINER to identify indels from whole genome resequencing datasets using paired-end reads.
102                                   Evolve and resequence (E&R) experiments use experimental evolution
103                 The growing number of genome resequencing efforts and genome-wide association studies
104                                              Resequencing efforts are uncovering the extent of geneti
105 ancer locus and further confirms that cancer resequencing efforts should not ignore the study of nonc
106 mains challenging, especially for 'targeted' resequencing efforts.
107 for both de novo and comparative sequencing (resequencing), eliminating the need for a reference geno
108                                              Resequencing, expression analysis, and biochemical exper
109                         Although whole-exome resequencing facilitates the identification of disease g
110 e region was discovered through whole genome resequencing focused on chicken chromosome 2.
111  Hispanics with >=20 pack-years smoking were resequenced for the identification of rare variants (all
112                                       Genome resequencing found 5383 common SNPs (frequency >/= 0.05)
113                                       Genome resequencing, gene cloning, and activity assays revealed
114                                       Genome resequencing, gene deletion and complementation, gene ex
115 the neotropical Heliconius butterflies using resequenced genomes from 58 wild-caught individuals of H
116                    Alignment of more than 50 resequenced genomes from diverse sorghum genotypes to th
117 duals of Heliconius melpomene and another 21 resequenced genomes representing 11 related species.
118 d the origins and population genomics of 163 resequenced glyphosate-resistant and susceptible individ
119 r only identical mitochondrial genomes, deep resequencing has uncovered unanticipated extreme genetic
120                                       Genome resequencing identified 17 confirmed mutations unique to
121                                       Genome resequencing identified 29 variants between the nine sub
122                                     Targeted resequencing identified a single missense mutation (c.68
123                                       Genome resequencing identified fixation of mutations in CgSTE11
124                                         Gene resequencing identified three CYP2B11 haplotypes, H1 (re
125  segregant analysis followed by whole genome resequencing identified three linked genes (doc-1, doc-2
126 ion of a set of 26 candidate genes that were resequenced in 132 independent nsCPO cases and 623 indep
127                                 The gene was resequenced in 20 individuals.
128                            The TLR8 gene was resequenced in 288 AR patients from Malmo and the data w
129                                              Resequencing in 1107 samples from patients with myelopro
130                          Sex-specific genome resequencing in a recent species radiation, the An. gamb
131 ed genome-wide analysis followed by targeted resequencing in a Turkish consanguineous multiplex famil
132                Here, we conduct whole-genome resequencing in Capsella bursa-pastoris, a recently form
133 contrasting response to salt stress, genomic resequencing in diverse genetic materials is needed to e
134 nable cost-effective multiplex targeted gene resequencing in large cohorts.
135                                              Resequencing in larger, multiethnic population samples a
136 e combine linkage analysis with whole-genome resequencing in patients with growth hormone deficiency
137              We performed exome and targeted resequencing in samples obtained from 586 additional pat
138 ation of whole-exome sequencing and targeted resequencing in three ET families.
139                Here, through next-generation resequencing, in vivo functional studies and gene microa
140 There are a number of approaches to targeted resequencing, including microfluidic PCR amplification,
141 a within individuals with cystic fibrosis by resequencing individual colonies and whole populations f
142 a genome and a geographically broad panel of resequenced individuals.
143 lation structure and pattern of evolution by resequencing individuals collected across its distributi
144 rtant in the clinical setting where targeted resequencing is frequently being applied to rapidly asse
145         Uncovering genetic variation through resequencing is limited by the fact that only sequences
146 ne used in those two sequencing studies, and resequenced its heteroplasmy sites.
147                            Using L1-targeted resequencing (L1-seq), we studied different stages of fo
148 xt-generation mapping using the whole genome resequencing method identified the llf locus as FKF1 FKF
149 , we describe the development of a pan-viral resequencing microarray (PathogenID v3.0) able to explor
150  15 tumor/normal pairs, followed by targeted resequencing, miRNA analysis and immunohistochemical ana
151  genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the gl
152 us variants (NSVs) identified by deep exonic resequencing of 10 genes found by GWAS (IL10, IL23R, CCR
153 untreated patients at diagnosis and targeted resequencing of 101 SS cases.
154 ansformation, we combined exome and targeted resequencing of 111 TAM and 141 ML-DS samples with funct
155 e using whole-genome sequencing and amplicon resequencing of 112 EACs.
156        Here, the authors perform deep genome resequencing of 117 diverse accessions and reveal compre
157                    We performed whole-genome resequencing of 12 field isolates and eight commonly stu
158 sembly of a 1.28-Gb reference genome and the resequencing of 14 individuals from two independent popu
159 ucleotide polymorphisms detected by targeted resequencing of 18 153 genes in a population of 391 unre
160       We perform targeted massively parallel resequencing of 19 known and 46 candidate genes for epil
161                     Here, we report the deep resequencing of 248 sheep including the wild ancestor (O
162                                 Whole-genome resequencing of 25 resistant mutants revealed from one t
163                            From whole-genome resequencing of 292 Cajanus accessions encompassing bree
164                                              Resequencing of 3.7 Mb of MSY DNA in 334 males, comprisi
165                          Flow cytometry plus resequencing of 30 field isolates, 37 sexual offspring,
166                                       Genome resequencing of 33 representative individuals from world
167 watermelon reference genome and whole-genome resequencing of 414 accessions representing all extant s
168 ymorphisms of the chickpea from whole-genome resequencing of 429 lines sampled from 45 countries.
169 ions were estimated from pooled whole-genome resequencing of 48 individuals per population.
170                              On the basis of resequencing of 513 DCM cases and 1,150 matched controls
171                                              Resequencing of 52 accessions suggests that independent
172                                        Using resequencing of 60 wild individuals and 100 landraces fr
173 The array has been built from the high-depth resequencing of 63 different cultivars covering most of
174                        Here we report on the resequencing of 64 candidate neurodevelopmental disorder
175                      In this study, targeted resequencing of 644 individuals with epileptic encephalo
176                                   Population resequencing of 80 individuals showed effective populati
177 llion SNPs of African rice from whole-genome resequencing of 93 landraces.
178 -resolution copy-number analysis, and Sanger resequencing of a large cohort of T-PLL.
179 on the Ion Torrent PGM platform for targeted resequencing of a panel of six Plasmodium falciparum gen
180                                       Genome resequencing of a representative suppressor revealed a u
181                                              Resequencing of ABR6 allowed the creation of a single-nu
182                                       Genome resequencing of an Sse(A+) SpeB(A+) isolate identified a
183                                              Resequencing of CALR, encoding calreticulin, was then pe
184                                     Targeted resequencing of cancer genes in large cohorts of patient
185                                     Targeted resequencing of candidate genes was performed in an inde
186 (cDNA-smMIPs) that enable highly multiplexed resequencing of cDNA target regions of approximately 100
187                                              Resequencing of chemotypically extreme pools revealed a
188  of differential mRNA expression by targeted resequencing of complementary DNA using single-molecule
189   Here we have undertaken a population-based resequencing of complete mitochondrial genomes in Europe
190  for the ID phenotype, we performed targeted resequencing of DEAF1 in an additional cohort of over 2,
191                                       Genome resequencing of DG-8052 showed no general regulator muta
192 alms, SNP discovery was performed using deep resequencing of eight libraries derived from 132 Elaeis
193                                     Targeted resequencing of FGFR1 in multiple tissues from an indepe
194                                              Resequencing of GADL1 revealed a novel variant, IVS8+48d
195                                              Resequencing of Guatemalan and West Indian varieties rev
196                        We performed targeted resequencing of HDL-related genes in 200 patients admitt
197                         Single-cell targeted resequencing of highly fractionated stem cells revealed
198 uencing (whole exome sequencing and targeted resequencing of IBD susceptibility loci), transcriptome
199                    Genetic mapping and exome resequencing of individuals across the species range bot
200                                       Genome resequencing of male and female guppies from a populatio
201 embly and annotation, genetic mapping, exome resequencing of natural populations, and transcriptome a
202                                              Resequencing of NNT in additional LVNC families identifi
203 (four missense and one frameshift); targeted resequencing of PTCH1 in a second cohort of 48 ODA patie
204                      For amplification-based resequencing of regions that cannot be amplified by a si
205                                       Genome resequencing of seven additional horseweed biotypes was
206                     Here we use whole-genome resequencing of six 293 cell lines to study the dynamics
207                                     Targeted resequencing of six collagen genes replicated this assoc
208                                              Resequencing of SLCO2A1 revealed a nonsynonymous variant
209                          Subsequent targeted resequencing of TENM4 led to the discovery of two novel
210                                              Resequencing of the CHGA promoter in an Indian populatio
211                                     Targeted resequencing of the DLL4 gene with a custom enrichment p
212                               Here we report resequencing of the genomes of wild-type M145 and the ci
213                                 Whole genome resequencing of the human fungal pathogen Cryptococcus d
214                               Using targeted resequencing of the KWE critical region in five South Af
215  assessed Ptpn22 as a candidate for Idd18.2; resequencing of the NOD Ptpn22 allele revealed 183 singl
216                                 Whole-genome resequencing of the resistant (n = 20) and susceptible (
217 ction of DNA from blood samples and complete resequencing of the SYNE1 gene.
218                               Sequencing and resequencing of the T. sinense genome will help us under
219                                          The resequencing of the two parents of a cross between Eucal
220                        Using next-generation resequencing of the WWOX region, we first identified 8 v
221    Previously, as part of a large systematic resequencing of the X chromosome in 208 unrelated famili
222 ntal disorders (ID primarily) or by targeted resequencing of this locus in 12,041 individuals with AS
223                                              Resequencing of this region in 10 genetically and geogra
224                                              Resequencing of three plasmids in a reference Klebsiella
225 exemplifies the promise of future widespread resequencing of tumor genomes in providing new insights
226                               We also report resequencing of two cultivated peppers and de novo seque
227 rogress in de novo assembly and whole-genome resequencing of wild and cultivated soybean genomes, in
228 o (OR) = 25, P = 2.9 x 10(-14)) through deep resequencing of XFS cases and controls from nine countri
229                                    'Targeted resequencing' of a custom panel including genes coding f
230                                     Targeted resequencing offers a cost-effective alternative to whol
231 e Deeplex assay on an Illumina MiniSeq, were resequenced on MinION after applying a custom library pr
232 n in FKBP5 identified by Next Generation DNA resequencing on response to gemcitabine treatment of pan
233 vealed once complete assemblies will replace resequencing or other reference-dependent methods.
234                                              Resequencing or reference-based assemblies reveal large
235                              To this end, we resequenced peripheral blood DNA of 142 NAFLD-HCC, 59 NA
236 equencing, and simplifies retooling targeted resequencing pipelines to focus on new targets as new ge
237 nd 136,429 SNP markers from the whole-genome resequencing platform.
238 sting datasets from the Saccharomyces Genome Resequencing Project, we identify a rich seam of ribosom
239 dentified using PGen from additional soybean resequencing projects adding to 500+ soybean germplasm l
240                                           As resequencing projects become more prevalent across a lar
241  tool for use in eukaryotic population-based resequencing projects, particularly for assessing the jo
242 fectively to identify indels in whole-genome resequencing projects.
243                         In summary, targeted resequencing provided validation and novel insights into
244                                       Genome resequencing revealed an increasing number of genotype c
245                Superimposing these data with resequencing revealed CNVs to (1) be sufficient to cause
246                                       Genome resequencing reveals two distinct groups of mango variet
247 ere, we use transcriptome sequencing, genome resequencing scans for selection, and stress tolerance a
248  these with the published alpaca genome, and resequence seven individuals of all four species to bett
249 ion mutation was identified in either WES or resequencing step.
250 from temporal genomic data (e.g., evolve-and-resequence studies).
251                         Targeted large-scale resequencing studies have confirmed the significance of
252                       Large-scale population resequencing studies have revealed that gene space is fa
253 /CCH predisposition genes we undertook exome resequencing studies in a family with apparent predispos
254                                 Y-chromosome resequencing studies in Europe have highlighted the prev
255                                              Resequencing studies of 20 cases originally classified a
256  Our data also suggest that CNV analyses and resequencing studies unbiased for previous mutational bu
257 me-wide association studies and whole-genome resequencing studies, have identified genes that are ass
258 ession, and mutation data from cancer genome resequencing studies, we identified RNA binding motif pr
259  in the workflow of high-throughput targeted resequencing studies.
260                     This comprehensive FKBP5 resequencing study provides insights into the role of ge
261  and tetraploid Stuberosum exceeded any crop resequencing study to date, in part due to expanded wild
262                   In a separate family-based resequencing study, we identified a CXCR2 frameshift mut
263                                     Targeted resequencing technologies have allowed for efficient and
264 ral hundred new candidate genes and targeted resequencing technologies that allow screening of dozens
265            Here we introduce a new method to resequence the exome of NHP species by a designed captur
266                     We used exome capture to resequence the gene space along a latitudinal and two al
267                                           We resequence the genomes of 147 cotton accessions, includi
268  BAC-by-BAC approach to sequence the MSY and resequence the Y regions of 24 wild males and the Y(h) r
269 identification may prove more productive, we resequenced the ASD-associated gene CHD8 in 3,730 childr
270 of of concept for our discovery pipeline, we resequenced the entire major but conserved flowering tim
271                              To this end, we resequenced the four products of 13 meiotic tetrads alon
272 pectrum associated with DYRK1A mutations, we resequenced the gene in 7162 ASD/DD patients (2446 previ
273                  To confirm our findings, we resequenced the genes identified in the exome cohort in
274                                           We resequenced the genome of C. piperi to confirm and furth
275 ene canids, present-day wolves, and dogs, we resequenced the genomes of four Pleistocene canids from
276                                              Resequencing the CDKN2A-CDKN2B locus in 2,407 childhood
277  of P. dactylifera and its wild relatives by resequencing the genomes of date palm varieties and five
278 ions in individuals with ataxia worldwide by resequencing the SYNE1 gene.
279 e of 'citizen scientists', whose interest in resequencing their own Y chromosomes is generating a wea
280                                              Resequencing this region in selected individuals did not
281 e genome sequence and used population genome resequencing to assess genomic changes associated with t
282 g of MA lines was combined with whole genome resequencing to develop a high-resolution picture of the
283 ch include de novo genome sequencing, genome resequencing, transcriptome sequencing and genomic locat
284 , chromosomal microarray (CMA), and targeted resequencing (TRS) of candidate genes.
285                  To test this hypothesis, we resequenced two 3-4 generation nuclear families (totalin
286 95-8, C666-1, and HKNPC1) genomes were first resequenced using the sequencing workflow of target enri
287 eukaryotic genomes and that population-level resequencing using long reads is likely to provide novel
288 cluding 282 unpublished trios, and performed resequencing using multiple independent technologies.
289                            Although targeted resequencing utilized for the identification of causal v
290 essed genes, mapping information, and genome resequencing, we identified a 129-bp deletion in Glyma.1
291 genome sequencing and high-throughput cohort resequencing, we identified recessive mutations in MMP21
292 ogether with exon capture array and targeted resequencing, we identified three novel single nucleotid
293 enome assemblies and additional whole-genome resequencing, we use phylogenomic and population genomic
294  selection signatures and a SNP dataset from resequencing were integrated with the genomic regions id
295  We utilized high quality (15x) whole-genome resequencing (WGRS) on 106 diverse soybean lines and ide
296 increasing adoption of clinical whole-genome resequencing (WGS) demands for highly accurate and repro
297 ost of DNA sequencing, it is now possible to resequence whole genomes in order to systematically char
298 ed with this signature, we analyzed targeted resequencing, whole-exome sequencing, RNA sequencing, an
299 published reports, were analyzed by targeted resequencing with a customized enrichment system.
300 range polymerase chain reaction and amplicon resequencing with maize, one of the most repetitive geno

 
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