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1 l beyond the typical dimension of the single ribonucleotide.
2 tty acids, or 5-aminoimidazole-4-carboxamide ribonucleotide.
3 didehydro-CTP (ddhCTP), a previously unknown ribonucleotide.
4 c acid and PRPP to form carboxyaminopyrazole ribonucleotide.
5 rectly generated by Top1 at sites of genomic ribonucleotides.
6 e 3-OH nick terminus consists of two or more ribonucleotides.
7 evolved the ability to discriminate against ribonucleotides.
8 of repair mechanisms to remove incorporated ribonucleotides.
9 vage model for Top1-dependent mutagenesis at ribonucleotides.
10 ated by alkaline cleavage of DNA at embedded ribonucleotides.
11 repair of complex 8OG-containing DSBs using ribonucleotides.
12 -aminonucleotides, a more reactive proxy for ribonucleotides.
13 rse transcriptase in the presence of damaged ribonucleotide 1,N (6)-erA but has poor RNA primer exten
14 We conclude that the damaged and unrepaired ribonucleotide 1,N (6)-erA in DNA exhibits mutagenic pot
15 We found that TERT inserts a mismatch or ribonucleotide ~1 in 10,000 and ~1 in 14,000 insertion e
16 archaeal RNaseH2 rapidly cleaves at embedded ribonucleotides (200-450 s(-1)), but exhibits an approxi
18 e N6-methyladenosine-5'-triphosphate (m6ATP) ribonucleotide, a short synthetic RNA oligomer bearing a
20 avage of the substrate strand at an internal ribonucleotide adenosine (rA) site, resulting in release
22 of AMPK with 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) or metformin during sepsis improv
25 depletion or 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), leading to attenuated phosphoryl
26 of AMPK using 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), metformin, and a specific AMPKal
29 atalyzes the carboxylation of aminoimidazole ribonucleotide (AIR) and the subsequent conversion of ca
30 recursor ZMP (5-aminoimidazole-4-carboxamide ribonucleotide, also known as AICAR) brings about any me
31 l-mediated elimination of H2O to deoxygenate ribonucleotides, an example of 'spin-centre shift', duri
32 an assortment of 2'-deoxy and 2',3'-dideoxy ribonucleotide analogs containing functional chemistries
38 the hypothesis that the mutant incorporates ribonucleotides and/or accumulates single-stranded DNA g
39 y of DNA polymerases to discriminate against ribonucleotides, and by the capacity of repair mechanism
40 s is much less efficient than with activated ribonucleotides, and furthermore that once an arabinonuc
41 ing and completing repair of misincorporated ribonucleotides, archaea such as Thermococcus rely only
45 dual incision/excision assays, we find that ribonucleotides are not efficiently targeted by the huma
46 ile of DnaE, we propose that misincorporated ribonucleotides are removed by NER followed by error-pro
53 emonstrated the synthesis of pyrimidine beta-ribonucleotides, but at the cost of ignoring ribose amin
54 ds to be able to sequence not only canonical ribonucleotides, but at the same time directly sequence
55 bsequent conversion of carboxyaminoimidazole ribonucleotide (CAIR) and l-aspartate to N-succinylcarbo
56 odifications are growing rapidly as modified ribonucleotides can impact the sequence, structure, func
58 the LarB C terminus resembles aminoimidazole ribonucleotide carboxylase/mutase, LarC binds Ni and cou
60 on of the C-glycoside carboxyhydroxypyrazole ribonucleotide (CHPR) from 4-hydroxy-1H-pyrazole-3,5-dic
62 e RNA World Hypothesis begins with activated ribonucleotides condensing (nonenzymatically) to make RN
63 the 2'OH in RNA has a profound effect in the ribonucleotide conformational balance, adding an extra l
64 ine dimer formation was markedly enhanced in ribonucleotide-containing DNA, providing a mechanism for
66 e and initiate their removal by incising the ribonucleotide-containing strand of an RNA:DNA hybrid.
67 equential Top1 cleavage as the mechanism for ribonucleotide-dependent deletions and provide new insig
69 r, a PolD H931A steric gate mutant abolishes ribonucleotide discrimination and readily incorporates a
70 Saccharomyces cerevisiae revealed widespread ribonucleotide distribution, with a strong preference fo
71 NRF1 alone by 5-aminoimidazone-4-carboxamide ribonucleotide does not rescue the phenotype, which, in
73 od to map where these replicases incorporate ribonucleotides during replication, here we present evid
76 and nucleotides, to address the question of ribonucleotide entry into the active site of viral RdRp.
81 als conservation of the overall mechanism of ribonucleotide excision repair across domains of life.
82 STINGand is associated with reduced cellular ribonucleotide excision repair activity and increasedDNA
83 ea perhaps suggests a more ancestral form of ribonucleotide excision repair compared with the eukaryo
84 ensis both in vitro and in vivo and a robust ribonucleotide excision repair pathway is critical to ke
86 Contrary to our expectation, impairment of ribonucleotide excision repair, as well as virtually all
90 tivation of DNA-repair activities, including ribonucleotide excision, further increased nascent leadi
91 ry activity for aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), an enzyme in
95 cells lacking 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (ATI
96 insulin- and 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase-medi
97 MTX inhibits 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/inosine monophosphate c
98 tical role in targeting the removal of these ribonucleotides from DNA, and defects in RNase H2 activi
101 RNA:DNA hybrids and removes mis-incorporated ribonucleotides from genomic DNA through ribonucleotide
102 ls have hence developed mechanisms to remove ribonucleotides from the genome and restore its integrit
107 rlying the link between defective removal of ribonucleotides in AGS and SLE, and these findings will
111 eak down ketoacids, sugars, amino acids, and ribonucleotides in much the same way as the pathways tha
113 mitochondria lack mechanisms for removal of ribonucleotides incorporated by the mtDNA polymerase.
114 a source of DSBs and genome instability when ribonucleotides incorporated by the replicative polymera
116 ntext of replication and reflect incision at ribonucleotides incorporated during leading-strand synth
117 al dNTPs and the amount of the corresponding ribonucleotides incorporated in mitochondrial DNA, while
119 es N PolD) in the PolD s-motif both prevents ribonucleotide incorporation and promotes efficient dNTP
122 ne and guanosine, and identified hotspots of ribonucleotide incorporation in nuclear and mitochondria
128 ould therefore investigate the changes, upon ribonucleotide incorporation, of the structural and conf
129 tive DNA polymerases that are permissive for ribonucleotide incorporation, thus generating a signatur
131 comes important to understand the effects of ribonucleotides incorporation, starting from their impac
132 e AMP mimetic 5-aminoimidazole-4-carboxamide ribonucleotide increases the inhibitory phosphorylation
134 s in tandem repeats; in the specific case of ribonucleotide-initiated events, mutations reflect seque
139 DNA polymerase (pol) mu primarily inserts ribonucleotides into a single-nucleotide gapped DNA inte
140 act as a template for the polymerization of ribonucleotides into canonical 3'-5' phosphodiester-link
148 lso suggests that TOP1 processing of genomic ribonucleotides is the main source of 3'-blocking lesion
150 hereas RnhA does not incise an embedded mono-ribonucleotide, it can efficiently cleave within tracts
151 rmed from mixtures of cyanuric acid (Cy) and ribonucleotides (l-, d-pTARC) that arise spontaneously f
152 Non-enzymatic oligomerization of activated ribonucleotides leads to ribonucleic acids that contain
153 alance between guanylate deoxynucleotide and ribonucleotide levels that is pivotal for the parasite.
154 factor recruitment, ribosomal RNA synthesis, ribonucleotide levels, and affects ribosomal DNA stabili
156 urine nucleotides suggests that 8-oxo-purine ribonucleotides may have played a key role in primordial
157 ind that 5-FU and FUDR act through bacterial ribonucleotide metabolism to elicit their cytotoxic effe
159 Additionally, RNase H2 can remove single ribonucleotides misincorporated into DNA during replicat
160 ted nonenzymatic polymerization of activated ribonucleotide monomers is generally slow because of the
163 discriminate against rNTPs and incorporated ribonucleotides must be removed by ribonucleotide excisi
165 unt separately for the pyrimidine and purine ribonucleotides; no divergent synthesis from common prec
166 orated dNs occurring at 1 per 10(3) to 10(5) ribonucleotide (nt) in mRNA, rRNAs and tRNA in human cel
167 o-oligomer DNA sequences containing 10 deoxy-ribonucleotides of thymine, adenine, cytosine, or guanin
168 ication, DNA polymerases tolerate patches of ribonucleotides on the parental strands to different ext
169 amage-stalled replication by inserting deoxy-ribonucleotides opposite DNA damage sites resulting in e
171 rolyze RNA to release 2'-deoxyribonucleotide-ribonucleotide pairs (dNrN) that are then quantified by
172 mitochondrial DNA, while in nuclear DNA the ribonucleotide pattern was only altered in the absence o
173 DNA polymerases incorporate as many as 1,000 ribonucleotides per genome, RNaseH2 must be efficient at
175 are small, specialized molecules formed from ribonucleotide precursors that function to amplify signa
176 l) formimino)-5-aminoimidazole-4-carboxamide-ribonucleotide (PRFAR) in the histidine biosynthesis pat
178 e incorporation of incorrect nucleotides and ribonucleotides primarily through reduced nucleotide bin
180 yl)formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (ProFAR) to N'-((5'-phosphoribulosyl) for
181 d retained self-immune complexes composed of ribonucleotide proteins, autoantibody, and complement.
183 report that the pol mu insertion products of ribonucleotides (rATP or rCTP), instead of deoxyribonucl
185 valence concentrations at which DFP inhibits ribonucleotide reductase (RNR) activities and/or reduces
186 y of their respective rate-limiting enzymes, ribonucleotide reductase (RNR) and deoxycytidine kinase
188 ates accumulate during activation of class I ribonucleotide reductase (RNR) beta subunits, which self
196 estigated for 2 and 5, including the role of ribonucleotide reductase (RNR) inhibition, endoplasmic r
197 t does not suppress their sensitivity to the ribonucleotide reductase (RNR) inhibitor hydroxyurea (HU
203 cifically incorporated into E. coli class Ia ribonucleotide reductase (RNR) using the recently evolve
204 ive copies of nrdB, encoding beta-subunit of ribonucleotide reductase (RNR), a critical enzyme involv
206 se heart and skeletal muscle by inactivating ribonucleotide reductase (RNR), a key enzyme for the de
208 of dNTP biosynthesis in mammals, the enzyme ribonucleotide reductase (RNR), impacts cancer susceptib
209 nsfer (ET) reactions of photosystem (PS) II, ribonucleotide reductase (RNR), photolyase, and many oth
211 A new example is Epstein-Barr virus (EBV) ribonucleotide reductase (RNR)-mediated inhibition of ce
216 nscription factor A (TFAM) and p53-inducible ribonucleotide reductase 2 (p53R2), which are involved i
219 and that negative feedback between dATP and ribonucleotide reductase ensures tight control of dNTP c
220 work by Wang et al. (2014), reveal that HSV ribonucleotide reductase has opposing activities in eith
224 unoprecipitation experiments showed that the ribonucleotide reductase large subunit of EBV, BORF2(6,7
226 ystem II, the phytochrome photoreceptor, and ribonucleotide reductase R2 illustrate the power and ver
228 th pharmacological and genetic inhibition of ribonucleotide reductase regulatory subunit M2 (RRM2), a
229 ecular docking analysis identified the RRM2 (ribonucleotide reductase regulatory subunit M2) of RNR a
231 protein VP22 (encoded by the UL49 gene), and ribonucleotide reductase subunit 2 protein (RR2; encoded
233 rotein known to produce DNA building blocks (ribonucleotide reductase) causes A3B to relocalize from
234 active site similar to that in hemerythrin, ribonucleotide reductase, and methane monooxygenase, all
235 emcitabine incubation irreversibly inhibited ribonucleotide reductase, depleting dNTPs, resulting in
236 The rate-limiting enzyme of dNTP synthesis, ribonucleotide reductase, is inhibited by endogenous lev
237 siae by depleting Rnr1, the major subunit of ribonucleotide reductase, which converts ribonucleotides
240 tor is present in the R2 subunit of class Ic ribonucleotide reductases (R2c) and in R2-like ligand-bi
247 A fascinating discovery in the chemistry of ribonucleotide reductases (RNRs) has been the identifica
252 R2) subunit of the class 1a Escherichia coli ribonucleotide reductases by reaction with O2 followed b
253 Our analysis uncovers major differences in ribonucleotide repair between the two genomes and provid
257 logically relevant beta-anomer form of these ribonucleotides, revealing abiotic mechanisms by which n
259 es that remove both R-loops and incorporated ribonucleotides (rNs) from DNA, grow slowly, suggesting
260 ble to extend RNA primers in the presence of ribonucleotides (rNTPs), and that these reactions are an
264 f RNA synthesis by RNA polymerase in which a ribonucleotide specified by a single base in the DNA tem
265 ng of eitherRNA:DNAhybrid or genome-embedded ribonucleotide substrates is thought to lead to activati
266 enzyme is responsible for reducing all four ribonucleotide substrates, with specificity regulated by
269 of solid tissues contains many more embedded ribonucleotides than that of cultured cells, consistent
272 red cells, consistent with the high ratio of ribonucleotide to deoxynucleotide triphosphates in tissu
273 ution of DNA:RNA hybrids and misincorporated ribonucleotides to chromosome instability also was uncer
275 s (RNRs) catalyze the conversion of all four ribonucleotides to deoxyribonucleotides and are essentia
276 reductase (RNR) catalyzes the conversion of ribonucleotides to deoxyribonucleotides to provide the m
277 Ribonucleotide reductase (RNR) converts ribonucleotides to deoxyribonucleotides, a reaction that
282 non-templated uridine (U) and guanosine (G) ribonucleotides to the 3' termini of these RNAs (designa
283 reductases (RNRs) catalyze the reduction of ribonucleotides to the corresponding deoxyribonucleotide
284 le most DNA polymerases discriminate against ribonucleotide triphosphate (rNTP) incorporation very ef
285 nt form of DNA aberration, as high ratios of ribonucleotide triphosphate:deoxyribonucleotide triphosp
288 in eukaryotic EndoV confer recognition of 3 ribonucleotides upstream and 7 or 8 bp of dsRNA downstre
289 it is likely that the prebiotic synthesis of ribonucleotides was accompanied by the simultaneous synt
290 mitochondrial genomes incorporate and remove ribonucleotides, we challenged these processes by changi
291 ys preserves the capacity to remove a single ribonucleotide when paired to an oxidized base or to inc
292 Two types of Ribonuclease H (RNase H) excise ribonucleotides when they form part of the DNA strand, o
293 hairpin oligonucleotide with five continuous ribonucleotides which can be cleaved by the ribonuclease
294 Most, however, reflect enzyme incision at ribonucleotides, which are the most abundant noncanonica
295 molecules (hundreds of basepairs) containing ribonucleotides, which is based on a modified protocol f
297 e-free hydrolysis for 17 phosphoramidates of ribonucleotides with amino acids or related compounds at
298 eoxyribonucleotides to RNA, but can also add ribonucleotides with relatively high efficiency in parti
300 elevation of 5-aminoimidazole 4-carboxamide ribonucleotide (ZMP) and growth inhibition in NCI-H460 a