ライフサイエンスコーパス: segmentation

1 ve on how statistical cues facilitate speech segmentation.

2 in 74%, and 76 (49%) were tasked with image segmentation.

3 success in image analysis including semantic segmentation.

4 e evaluations served as the ground truth for segmentation.

5 to segment the femur and tibia versus manual segmentation.

6 bjectively ranked for artefact detection and segmentation.

7 thetic junctions and by comparison to manual segmentation.

8 provide information for two-dimensional (2D) segmentation.

9 d with CVS criteria and hepatocystic anatomy segmentation.

10 al projections were obtained using automatic segmentation.

11 hold combined with manual identification and segmentation.

12 is proposed to provide robust and objective segmentation.

13 rmance met or exceeded that of expert manual segmentation.

14 cted by using atlas-based coregistration and segmentation.

15 egarding the most accurate approach for such segmentation.

16 deep learning BC analysis method with manual segmentation.

17 its high performance in tasks like histology segmentation.

18 logy mMRI image sub-regions, to obtain tumor segmentation.

19 arned from refined analysis of medical image segmentations.

20 sed via (1) validation against manual guttae segmentation, (2) reproducibility studies to ensure cons

21 lidation and equivalency testing with manual segmentation, a fully automated deep learning BC analysi

22 correlation between the manual and automated segmentation, a reproducibility comparison, and Bland-Al

23 NNs) have been successfully used in semantic segmentation-a subfield of image classification in which

24 -of-the-box tool, rendering state-of-the-art segmentation accessible to a broad audience by requiring

25 proaches, BCM3D consistently achieves higher segmentation accuracy and further enables automated morp

26 arge and small intestines demonstrated lower segmentation accuracy and poor correlations.

27 aset of 50 scans was annotated to assess the segmentation accuracy and was compared against the splen

28 and moderate correlations were found between segmentation accuracy as measured by the Dice coefficien

29 We systematically evaluate the segmentation accuracy of BCM3D using both simulated and

30 ave-one-out cross-comparison to estimate the segmentation accuracy of FreeSurfer and MAPER.

31 Segmentation accuracy was characterized using Dice score

32 It offers a standardized measure of segmentation accuracy which has proven useful.

33 Automatic atrial segmentation achieved a 91% Dice score, compared with th

34 Automatic segmentations achieved a median dice similarity coeffici

35 zed using the in-built graph-based automatic segmentation algorithm for single retinal layer identifi

36 ard neural networks, we propose an automatic segmentation algorithm for swallowing accelerometry and

37 An automated whole-body high-uptake segmentation algorithm identified all 3-dimensional regi

38 to validate the performance of an automatic segmentation algorithm on the primary clinical trial end

39 tment groups measured by the fully automatic segmentation algorithm was 0.072+/-0.035 mm(2) (P = 0.02

40 The fully automatic segmentation algorithm was as accurate as semiautomatic

41 ence tomography (HD-OCT), and a custom-built segmentation algorithm was used to generate 3D color-cod

42 4) by a fully automatic, deep learning-based segmentation algorithm.

43 dy, we demonstrate fusing multiple MS lesion segmentation algorithms based on the insights into the a

44 While semantic segmentation algorithms enable image analysis and quanti

45 uding two convolutional neural network (CNN) segmentation algorithms was developed.

46 tifacts but also by the limitations of image segmentation algorithms.

47 ly used measure for evaluating medical image segmentation algorithms.

48 n in cmn results in loss of notochord sheath segmentation, altering osteoblast migration to the devel

49 Cine segmentation and 4D flow analysis were performed using d

50 series data, making possible direct, dynamic segmentation and analysis of experimental tracks of rapi

51 the consolidation of fin rays (e.g., reduced segmentation and branching), reduction of the fin web, a

52 histologic images, achieving reliable nuclei segmentation and cell classification.

53 duce LysoQuant, a deep learning approach for segmentation and classification of fluorescence images c

54 o developed an image processing pipeline for segmentation and classification of morphological regions

55 Accurate segmentation and classification of tumors are critical f

56 This paper presents a new segmentation and counting method for nuclei, which can a

57 ucts these trajectories using optimal, joint segmentation and deconvolution of mutation type and alle

58 Deep learning training for segmentation and detection of stroke lesions on DW image

59 ONH prelaminar schisis can impact OCT image segmentation and diagnostic parameters, resulting in sub

60 T image quality were included for manual CAC segmentation and extraction of a predefined set of radio

61 red with manual ground truth for accuracy of segmentation and flow measures derived on a global and p

62 The CNN performed similarly to manual segmentation and flow measures for mean stress myocardia

63 further show that automated histopathologic segmentation and generation of computationally stained (

64 Based on image-segmentation and heuristic algorithms for object trackin

65 Automatic segmentation and localization of lesions in mammogram (M

66 ted laryngeal endoscopy, by fully automating segmentation and midline detection.

67 hallenge 2019 (BraTS 2019) dataset for tumor segmentation and overall survival prediction, and to the

68 ter predictor of future VA than quantitative segmentation and PL testing.

69 h flexible software that is capable of image segmentation and probing a variety of color spaces (RGB,

70 ta were analyzed using deep learning-enabled segmentation and quantification of the tumor region of i

71 nancial inclusion through technology and the segmentation and service distribution strategies of priv

72 that the proposed method offers robust tumor segmentation and survival prediction, respectively.

73 ngiography examinations included vasculature segmentation and the creation of maximum intensity proje

74 used light-sheet imaging and automated cell segmentation and tracking procedures to systematically q

75 deos from 4 standard views, before and after segmentation, and calculated a wall motion abnormality c

76 sion 3.8.0) were used for intraretinal layer segmentation, and mean thickness of intraretinal layers

77 g Dice score and lesion volume of the stroke segmentation, and statistical significance was tested us

78 on of gene pairing disrupts oscillations and segmentation, and the linkage of her1 and her7 is essent

79 segmentations were validated against manual segmentations, and MCT measurements were shown to be in

80 disease progression influence the success of segmentation; and assess differences in MTVs and discrim

81 s spondylolisthesis, scoliosis and vertebral segmentation anomalies and previous surgery in the lumba

82 To validate a single atlas image segmentation approach for automated assessment of tissue

83 Compared to state-of-the-art bacterial cell segmentation approaches, BCM3D consistently achieves hig

84 de psychophysical evidence that grouping and segmentation are implemented recurrently in humans, and

85 puted network components and IDEAS chromatin segmentations are companion resources to the matching ep

86 Segmentation artifacts and incomplete coverage of CNV on

87 r linear, 2-D and 3-D manual CC measures and segmentations as part of CC size quantification.

88 ficient between estimation motion and manual segmentation at 0.82-0.87.

89 f the audio and speech data involved speaker segmentation, automatic speech recognition and machine l

90 vLUME features include visualization, segmentation, bespoke analysis of complex local geometri

91 uded within the Multimodal Brain Tumor Image Segmentation (BraTS) dataset plus a clinical dataset (20

92 lar volumes that could be used to aid expert segmentation, but can benefit from expert supervision, p

93 Fully automated ventricular segmentation by the tested algorithm provides contours a

94 Manual segmentations by an experienced radiologist were used as

95 nt (ADC) at baseline was calculated by using segmentations by two readers at nephrographic-phase CT a

96 as fission yeast and many bacteria, this 2D segmentation can be computationally extruded into the th

97 Segmentation can be cumbersome; a fast, easy, and robust

98 ge, 5-7 seconds) and reliable adipose tissue segmentation can be performed with high Dice overlap (0.

99 Moreover, we show that automatic tissue segmentation can identify anatomical changes before conv

100 These segmentations can be used to extract structural characte

101 These segmentations can be used to obtain diameter and other m

102 NNs do not, suggesting that the grouping and segmentation capabilities of CapsNets are crucial.

103 In nine cases the circular binary segmentation (CBS) algorithm failed to detect focal abno

104 The 2018 Multimodal Brain Tumor Segmentation Challenge (BraTS) dataset was used in this

105 oposed methods to the Multimodal Brain Tumor Segmentation Challenge 2019 (BraTS 2019) dataset for tum

106 tion of progression when using only the auto-segmentation change maps.

107 After lung segmentation, chest CT scans from center 1 (training coh

108 Here, using two linked zebrafish segmentation clock genes, her1 and her7, and combining s

109 Our work identifying the human segmentation clock represents an important milestone in

110 olled by a molecular oscillator known as the segmentation clock(1,2).

111 lic genes that are associated with the mouse segmentation clock, suggesting that this oscillator migh

112 ouse(4)-recapitulate the oscillations of the segmentation clock.

113 ic datasets used in international biomedical segmentation competitions.

114 2D segmentations created within or outside Pomegranate can

115 on detecting the glottal midline in glottis segmentation data, but are outperformed by deep neural n

116 l brain tumor MRI scans from the Brain Tumor Segmentation database were clinically interpreted.

117 netic analyses of patients with severe spine segmentation defects have implicated several human ortho

118 Automated segmentation demonstrated characteristic response patter

119 sheath formation and abnormal axial skeleton segmentation due to dysregulated biogenesis of notochord

120 rence seems needed to implement grouping and segmentation efficiently.

121 A relationship between the presence of segmentation errors (SE) in the slabs and low visual acu

122 in three different sets: (1) images without segmentation errors or artefacts, (2) low-quality images

123 rs or artefacts, (2) low-quality images with segmentation errors, and (3) images with other artefacts

124 adiomic workflow includes image acquisition, segmentation, feature extraction, and analysis of high-d

125 ides common spatial referencing and cortical segmentation for advanced neuroimaging data processing a

126 After semiautomated segmentation, fractional ventilation was calculated from

127 In conclusion, a novel segmentation-free algorithm to extract RNFL thickness pe

128 This study describes a segmentation-free deep learning (DL) algorithm for measu

129 In test set 2, segmentation-free predictions had higher correlation wit

130 Segmentation-free predictions were also better in test s

131 In test set 1, segmentation-free RNFL predictions were highly correlate

132 Segmentation-free, whole image analysis applied to Fluop

133 The neural network segmentations from 277 patients who underwent scanning i

134 Input into ASCAT quantified CNV using the segmentation function to measure copy number inflection

135 robust to variations in embryonic geometry; segmentation gene expression remains reproducible even w

136 Using brightfield images for segmentation has the advantage of being minimally photot

137 The cascaded-CNN is a semantic segmentation image classifier and was trained using thou

138 Unsupervised segmentation imaging analysis of acquired DESI-IMS data

139 egmentation performs well compared to manual segmentation in most tissues and will be valuable in fut

140 sed DCNet was compared to a similar 3D U-Net segmentation in terms of sensitivity, specificity, preci

141 through narrow pores did not induce nuclear segmentation in the neutrophils.

142 s better than FreeSurfer at modelling manual segmentations in the healthy control leave-one-out analy

143 Automated adipose tissue segmentation is feasible in 3D whole-body MRI datasets a

144 n of the position of automatically generated segmentation lines anterior and posterior to any suspect

145 solved PAMM lesions were created using 2 OPL segmentation lines with -9-mum and 0-mum offsets, and th

146 obal context to predict a precise pixel-wise segmentation map of an input full MG image.

147 cally normal non-brachycephalic dogs, tissue segmentation maps and a cortical atlas generated from Je

148 Predicted segmentation maps underwent post-processing to determine

149 Segmentation masks and adipose tissue profiles are autom

150 istently fares better in generating accurate segmentation masks and assigning boundaries for touching

151 In the coming years, enhanced, automated OCT segmentation may assist personalization of real-world ca

152 sting that hippocampal activity during event segmentation may be a broad indicator of individual diff

153 he DOG particle picking method and the image segmentation method are tested on our simulation data, a

154 A segmentation method based on deep learning can accuratel

155 introduce a generalist, deep learning-based segmentation method called Cellpose, which can precisely

156 We further demonstrate how our audience segmentation method can quantify the level of interest f

157 quence, developing an automatic and reliable segmentation method is very favored by physicians.

158 The 41% segmentation method performed slightly worse, with longe

159 We developed nnU-Net, a deep learning-based segmentation method that automatically configures itself

160 In addition, we implemented a semantic segmentation method to identify tumor-infiltrated diagno

161 ospective study, an automated gradient-based segmentation method was used to assess the maximum stand

162 ucibility of the MTR measurements and of the segmentation method were assessed from repeated measurem

163 both sessions (N's = 19-41, depending on the segmentation method).

164 ansferred to new datasets best regardless of segmentation method.

165 based decisions on their choice of atlas and segmentation method.

166 hrough a modified simple one-pass superpixel segmentation method.

167 We evaluated two segmentation methods (MAPER and FreeSurfer), using three

168 Several automatic image segmentation methods and few atlas databases exist for a

169 reduced repeatability because of suboptimal segmentation methods and requires further development be

170 Different segmentation methods can be used that predict prognosis

171 Both segmentation methods reliably identified known abnormali

172 t annotations and exceeded those of existing segmentation methods.

173 ferences in MTVs and discriminatory power of segmentation methods.

174 visible to the eye or easily extracted with segmentation methods.

175 CNNs were used to develop a fully automated segmentation model for proton density-weighted images.

176 We trained and validated a pixel-level segmentation model on 117 RCM mosaics collected by inter

177 A deep neural network comprising a segmentation model to highlight hepatocystic anatomy and

178 anual delineations were used to evaluate the segmentation model using 5-fold cross-validation.

179 t, 2740 frames were annotated to develop the segmentation model, which achieved a Dice similarity coe

180 Compared to other segmentation models, NuSeT consistently fares better in

181 Most of the segmentations (n = 273, 99.3%) were rated as very good t

182 cessary for pioneering accessibility of late segmentation network CRMs.

183 The segmentation network resulted in an accurate detection o

184 The U-Net-based segmentation network was trained to automatically detect

185 hila embryos during the establishment of the segmentation network, comparing wild-type and mutant emb

186 ehensive experiments and analyses on various segmentation neural networks.

187 for metabolic diseases, a reliable automated segmentation of adipose tissue into subcutaneous and vis

188 Event boundaries also lead to the segmentation of adjacent episodes in later memory, evide

189 phoma (DLBCL) whose measurement requires the segmentation of all malignant foci throughout the body.

190 Here, we report a workflow for the segmentation of anatomical structures and the annotation

191 achieve reproducible and quality-controlled segmentation of cardiac trabeculations, outperforming in

192 Many biological applications require the segmentation of cell bodies, membranes and nuclei from m

193 CNN implementation, we demonstrate automated segmentation of cells and nuclei from brightfield images

194 Three-dimensional (3D) segmentation of cells in microscopy images is crucial to

195 pends on accurate and reliable detection and segmentation of cells so that the subsequent steps of an

196 Automatic and manual segmentation of corneal layers was performed using a cus

197 Automated segmentation of CT neuroanatomy is feasible with a high

198 p learning algorithm for accurate multiclass segmentation of digital whole-slide images of periodic a

199 tinal compartments was applied for automated segmentation of fluid with every voxel classified by a c

200 The reference standard was the manual segmentation of four LV anatomic structures performed on

201 ctures was implemented and optimized for the segmentation of GA in CFIs.

202 model allowed for fully automatic and robust segmentation of GA on CFIs.

203 Accurate and automatic segmentation of glioblastoma on clinical scans is feasib

204 s thus sufficient to achieve an unsupervised segmentation of high-dimensional data, complementary to

205 t and animal morphogenesis requires accurate segmentation of individual cells in volumetric images of

206 tion and image quality, which allows for the segmentation of individual cells.

207 s, graph skeletonization of the stem points, segmentation of individual lamina and whole leaf labelin

208 la U-Net based model can be used for precise segmentation of masses in MG images.

209 The detection and segmentation of meaningful figures from their background

210 s is unknown, such as in white matter lesion segmentation of multiple sclerosis (MS) patients.

211 We found that surprise was associated with segmentation of ongoing experiences, as reflected by sub

212 nal neural network architecture for accurate segmentation of periodic acid-Schiff-stained kidney tiss

213 present PlantSeg, a pipeline for volumetric segmentation of plant tissues into cells.

214 Automated segmentation of retinal sublayers was performed with man

215 D) and choroidal thickness were by automated segmentation of spectral-domain optical coherence tomogr

216 cross the cell, we enhance the detection and segmentation of spiking cells compared to the shot-noise

217 trast and facilitate more accurate automatic segmentation of the 3-dimensional choroidal vessel and s

218 Postprocessing of CT data included segmentation of the coronary tree and heart contours, ca

219 tion of particularly resilient memories, and segmentation of the flow of experience into discrete per

220 ) independently and blindly performed manual segmentation of the GA lesions on each NIR and FAF image

221 cessing through a case-study of unsupervised segmentation of the ISIC 2018 skin lesion images.

222 Postprocessing of cardiac MRI data included segmentation of the left ventricle (LV) in cardiac MRI p

223 The extracted ROIs are used for the segmentation of the LV cavity and myocardium via a novel

224 t of a validated algorithm for the automated segmentation of the retinal layers including early AMD f

225 he CC slab was extracted after semiautomatic segmentation of the retinal pigment epithelium/Bruch mem

226 Manual segmentation of the STN was performed on 0.4 mm in-plane

227 Segmentation of the vertebrate hindbrain leads to the fo

228 Fully automatic segmentation of wound areas in natural images is an impo

229 ation to a single atlas image with reference segmentations of 18 volume of interests (VOIs).

230 Independent manual segmentations of aneurysms in a 3D voxel-wise manner by

231 in aSAH by providing automated detection and segmentations of aneurysms.

232 data reached a median Dice score of 0.81 for segmentation on BraTS test data but only 0.49 on the cli

233 pplying a fully convolutional neural network segmentation on clinically diverse dataset of 637 cone b

234 olutional neural network to perform semantic segmentation on quantitative phase maps.

235 onal independent reader by using full-lesion segmentations on a single transversal slice.

236 An increase in segmentation performance over state-of-the-art methods i

237 Multiclass segmentation performance was very high in all disease mo

238 .33) did not impede detection sensitivity or segmentation performance.

239 ide some potential ways of further improving segmentation performance.

240 on and characterization using a single atlas segmentation performs well compared to manual segmentati

241 lies make use of features such as foreground segmentation, perspective, motion parallax, and integrat

242 ementation of this network within the aortic segmentation pipeline for both contrast and non-contrast

243 An automated segmentation pipeline including two convolutional neural

244 to establish a high-throughput and automated segmentation pipeline of pathological blood vessels in C

245 A segmentation pipeline was used to accurately identify tr

246 The segmentation pipeline yielded a mean DSC of 0.873 +/- 0.

247 cted using an OCT machine-learning augmented segmentation platform.

248 While deep learning has been applied to cell segmentation problems before, our approach is fundamenta

249 This is because the segmentation process incorporates more multi-scale spati

250 ional evidence that a recurrent grouping and segmentation process is essential to understand the visu

251 indings reveal the operation of visual shape-segmentation processes that parse shapes based on their

252 al volumes were measured using both a manual segmentation protocol and FreeSurfer 6.0.

253 We present a segmentation protocol which, through the application of

254 Visual inspection of segmentation quality showed most errors (73%) occurred a

255 Ventricular segmentation, radiomics features extraction, and machine

256 By evaluating segmentation results of proposed method-based tool, we t

257 By evaluating segmentation results, the proposed method was compared t

258 eus to involve more information for improved segmentation results.

259 ased on multiscale directional filters and a segmentation routine that leverages deep learning and sp

260 combining ffCNNs with recurrent grouping and segmentation, solve this challenge.

261 context aware deep learning for brain tumor segmentation, subtype classification, and overall surviv

262 NuSeT addresses common challenges in nuclear segmentation such as variability in nuclear signal and s

263 oniously explain common features of metazoan segmentation, such as changes of periods leading to wave

264 ithms provided by our analysis to generate a segmentation that exhibits improved performance.

265 Compared to manual segmentation, the automated system was reasonably accura

266 Using CT scanning and manual segmentation, the orientation of the skull was reconstru

267 on indicating predictive processes of speech segmentation-the neural phase advanced faster after list

268 tigations support key predictions from event segmentation theory and extend theoretical conceptualiza

269 works as a validation method for a heartbeat segmentation third-party algorithm.

270 ithm was as accurate as semiautomatic expert segmentation to assess EZ defect areas and was able to r

271 Here, we apply semantic segmentation to protein structures as a novel strategy f

272 The segmentation to visualize the cristae invaginations into

273 We report a Nuclear Segmentation Tool (NuSeT) based on deep learning that ac

274 We developed an automated semantic segmentation tool utilizing deep learning for rapid and

275 However, because segmentation tools usually rely on color information, th

276 -based image analysis pipeline that performs segmentation, tracking, and lineage reconstruction.

277 el based on the architecture of the semantic segmentation U-Net model to precisely segment mass lesio

278 k (Keras) is applied to the problem of image segmentation using a U-Net.

279 An automated tool was applied for segmentation using an SUV of 2.5 (SUV2.5), an SUV of 4.0

280 by a deep neural network, compared to manual segmentation using diffusion weighted imaging (DWI) data

281 onnectivity; shared response modeling; event segmentation using hidden Markov models; and real-time f

282 Based on the aligned substantia nigra segmentations using a study-specific brain anatomical te

283 f cell proliferation across zebrafish embryo segmentation, using the FUCCI transgenic cell-cycle-phas

284 However, the mode of vertebral segmentation varies considerably between major lineages.

285 icient between the semi-automated and manual segmentation was 0.77 +/- 0.016.

286 The mean Dice ratio of automatic and manual segmentation was 0.93 +/- 0.04.

287 Mean intersection over union for segmentation was 66.6%.

288 The DSC of 3D CNN segmentation was comparable among different vendors (P =

289 Volumetric MRI for brain segmentation was performed at ages 1 and 2 years.

290 Using 2D and 3D imaging and image segmentation, we characterized two geometric cues, the w

291 Mean Sorensen-Dice coefficients for segmentation were 0.97 +/- 0.09 for the femur and 0.96 +

292 Segmentations were then used to derive the maximal diame

293 om fully automated deep learning-based tumor segmentations were used to predict nine common glioblast

294 The automated choroid segmentations were validated against manual segmentation

295 d, generated by the software using the "RPE" segmentation, were averaged to obtain a single RPE/BM co

296 nstrained poetic structure facilitate speech segmentation when common linguistic [4-8] and statistica

297 ph vessels were well represented in 3D after segmentation, which highlighted the advantages of 3D rec

298 s in Jueju negatively correlated with speech segmentation, which provides an alternative perspective

299 ral network enables accurate artery and vein segmentation with 4D CT angiography with a processing ti

300 registered and intensity normalized prior to segmentation with a multi-spectral neural network classi