ライフサイエンスコーパス: sequence identity

1 1-like enzyme from Arabidopsis thaliana (60% sequence identity).

2 ene segments (PB2, PB1, NA, MP, and NS; >98% sequence identity).

3 haC1, to which ChaC2 shows approximately 50% sequence identity.

4 CCL-conserved motif but share low amino acid sequence identity.

5 , as demonstrated by their unexpectedly high sequence identity.

6 es at the level of 90%, 50% and 30% pairwise sequence identity.

7 The encoded proteins share ~85% amino acid sequence identity.

8 ces of 1,914,862 bp, identical in length and sequence identity.

9 ionally closely linked EF-Ts only shares 55% sequence identity.

10 -3CL(pro) and PEDV 3CL(pro) share only 45.4% sequence identity.

11 erent TrpB homologues with as little as 57 % sequence identity.

12 viruses (HIV), tend to share high amino acid sequence identity.

13 parate transcriptional programs despite high sequence identity.

14 ty to its T2S ortholog GspH, despite minimal sequence identity.

15 YP51A and CYP51B, which share 59% amino acid sequence identity.

16 ompared with a polyhedrin with less than 10% sequence identity.

17 ies comparable to alignments based on actual sequence identity.

18 roteins of the two viruses sharing about 80% sequence identity.

19 d transposases annotated in GenBank with 80% sequence identity.

20 sequence identity, and northern bobwhite 97% sequence identity.

21 clustered in different families based on 90% sequence identity.

22 Nase III-like enzymes sharing 75% amino acid sequence identity.

23 losely-related paralogs with >75% amino acid sequence identity.

24 an 96% sequence coverage and more than 99.8% sequence identity.

25 tructure while tandem MS was used to confirm sequence identity.

26 hich often result in paralog genes with high sequence identity.

27 le is known about Kgp, which shares only 27% sequence identity.

28 rties compared with gpASNase1, despite a 70% sequence identity.

29 e most divergent family members sharing <15% sequence identity.

30 veals identical activity to HglS despite low sequence identity.

31 nverting enzyme 2, sharing approximately 50% sequence identity.

32 e fragments demonstrating very low levels of sequence identity.

33 iddle-domain across species, despite lack of sequence identity.

34 ic infection clusters, each having 99.8-100% sequence identity.

35 rred with the TnAs2 transposon with only 84% sequence identity.

36 e, P. aeruginosa and S. aureus, despite weak sequence identity.

37 -A subtype, including nucleases sharing high sequence identity.

38 p3, both 22-residue-long piscidins with 68% sequence identity.

39 a code factorized into sequence position and sequence identity.

40 TSP1, consistent with their high amino acid sequence identity.

41 es, especially for those with relatively low sequence identity.

42 e named species that share 99% 16S rRNA gene sequence identity.

43 rganization they display just 31% amino acid sequence identity.

44 ared structure despite low abundance and low sequence identity.

45 ty and structural homology, they exhibit low sequence identity.

46 l RNase architectures despite possessing low sequence identities.

47 osome and the mRNA substrate given their low sequence identities.

48 an be preserved at physical locations beyond sequence identities.

49 AgTG3 has a similar degree of sequence identity (~30%) to both human Factor XIII (FXII

50 ArsB and ArsC, which share a high sequence identity (71%), produce alkylresorcinols and al

51 ver dopamine D2 receptor (D2R), despite high sequence identity (78% in the transmembrane domain).

52 ce protein A (OspA, beta-sheet) to have high sequence identity (80 and 77%, respectively) with engine

53 available and the enzyme has high amino acid sequence identity (93%) to a closely related enzyme, the

54 High sequence identity (98%) between the genes encoding Fcgam

55 These metrics include (i) average protein sequence identity across all orthologs shared by two gen

56 y in measuring transcript abundance and high sequence identity across transcripts, has severely limit

57 of-thumb that proteins with as little as 30% sequence identity adopt the same fold.

58 V-1 and HIV-2 proteases share just 38 to 49% sequence identity, all critical structural features of p

59 ith the vaccine peptides, implying that high sequence identity alone was insufficient for cross-react

60 Us), which are clustered on the basis of DNA sequence identity alone, are the most commonly used micr

61 APRs are less conserved than average sequence identity among closely related homologues (>/=8

62 Despite the high sequence identity among different SAA isoforms, not all

63 nt) but APRs are more conserved than average sequence identity among homologues that have at least 50

64 less than 10,000 y ago, have high levels of sequence identity among subgenomes that mask the effects

65 The high sequence identity among these available sources may prec

66 When both base sequence identity and chemical probing reactivities were

67 ette, which we call DC4, had a high level of sequence identity and cluster together phylogenetically.

68 RPC4 and TRPC5 proteins share 65% amino acid sequence identity and form Ca(2+)-permeable nonselective

69 After careful correction for sequence identity and GC content, we predict approximate

70 and actin because the two proteins share low sequence identity and have distinct cellular roles.

71 es, with one gene in the pair having greater sequence identity and higher alignment scores with respe

72 re we surveyed the frequency of variation in sequence identity and length at CSB 2 amongst human mito

73 Ara h 6 shares approximately 60% sequence identity and multiple epitopes with Ara h 2.

74 ilizes fixed-backbone design to optimize the sequence identity and nucleobase conformations of an RNA

75 fication of Proteins) domains with up to 70% sequence identity and present all similarities among the

76 ne mammalian Nav channel isoforms share high sequence identity and remain recalcitrant to high-resolu

77 I by incorporating information from both the sequence identity and secondary structures.

78 more consensus sequences matching with >95% sequence identity and sequence coverage to the manually

79 cture and phosphate binding motif, a lack of sequence identity and some fundamental structural differ

80 and a distinct shape of relationship between sequence identity and structure similarity.

81 The integrases share only 59% amino acid sequence identity and the attP sites have fewer than 50%

82 Due to their high levels of sequence identity and the existence of many polymorphic

83 y homologous but evolved with widely varying sequence identity and thermodynamic stability.

84 Although they share a high degree of sequence identity and thus similarity in structure, many

85 Human and zebrafish CFTR share 55% sequence identity, and 42 of the 46 cystic-fibrosis-caus

86 study in humans due to the large size, high sequence identity, and mosaic nature of segmental duplic

87 chicken myoglobin, Japanese quail showed 98% sequence identity, and northern bobwhite 97% sequence id

88 ToxB homologs, or for any protein with >30% sequence identity, and therefore what underlies activity

89 Despite possessing a high degree of sequence identity, Ang1 and Ang2 have distinct functiona

90 Rrt6 shows only limited sequence identity ( approximately 15%) to known p24 prot

91 models built on template structures over 50% sequence identity are within 2.9 A of the experimental s

92 tional structural analyses revealed that the sequence identity at corresponding polar helical-wheel h

93 e developed a scoring algorithm based on the sequence identity at polar heptad sites.

94 for the BRD4 bromodomains that have over 90% sequence identity at the acetyl-lysine binding site.

95 simple tandem duplication of defensin7 with sequence identity at the junction, suggesting nonallelic

96 Using the R9.4.1 flow cell, IGS sequence identities averaged 99.57% compared to Sanger s

97 esolution, R-free factor, antigen or epitope sequence identity) based on their need.

98 bes the specific parameters for a nucleotide-sequence-identity-based method of organizing the viral s

99 divergent, with 77% and 87% mean amino acid sequence identities between East Asian and non-Asian gro

100 cellular BTB/Cul3-NTD complexes, despite low sequence identity between A55 and cellular BTB domains.

101 A recombinant bovine form of CAPG (91% sequence identity between bovine and human) was produced

102 lytic infection by the phage is dependent on sequence identity between CRISPR spacers and the target

103 Despite the high degree of amino acid sequence identity between family members, ASCTs function

104 characterized by a short N terminus and high sequence identity between human and mouse.

105 The high sequence identity between JPV-BH and JPV-LW suggests tha

106 There is a high level of sequence identity between MeNZB OMV and Bexsero OMV anti

107 ough three simple mutations despite only 26% sequence identity between native human and E. coli DHFRs

108 eys, it has been suggested that lowering the sequence identity between neighboring domains is one of

109 l complementation correlates with amino acid sequence identity between orthologs, but varies consider

110 datasets were stringently separated with the sequence identity between proteins from the two datasets

111 ss rate of MR however drops quickly when the sequence identity between query and templates is reduced

112 of the remaining 83% is hindered by the low sequence identity between receptors.

113 cleotide polymorphisms, although the protein sequence identity between strains exceeds 90% on average

114 lso display extreme divergence in amino acid sequence identity between STs (i.e., 59%-61% median iden

115 or toxicity testing is often reliant on high sequence identity between the human proteins and their a

116 ed using the template structure, the percent sequence identity between the template and target, and t

117 gens of G. lamblia that show >90% amino acid sequence identity between the two human-pathogenic genet

118 ariants greater than 0.7, despite an average sequence identity between the two of only 6.5% in this g

119 results highlight several key differences in sequence identity between these two steps, complement kn

120 The average nucleotide sequence identity between two genomes can be used for pr

121 The high degree of sequence identity between Zambian and other African MSV

122 Because of their very high sequence identity, biochemical studies done on H-Ras hav

123 pite their evolutionary distance and limited sequence identity, both ClpXP and the proteasome share a

124 Despite low sequence identity, both yeast and mammalian CTDs share a

125 e of peptide epitopes with stretches of 100% sequence identity bound to both dendritic cell (DC) majo

126 forms in the same individual displaying high sequence identities but large functional differences.

127 eins, including proteins with high levels of sequence identity but different folds, are exceptions to

128 nt forms of TcdB (TcdB1 and TcdB2) share 92% sequence identity but have reported differences in rates

129 ir subunit proteins FlgG and FlgE having 39% sequence identity, but show distinct mechanical properti

130 Two MmsF homologs sharing over 60% sequence identity, but showing no apparent impact on par

131 ficity so that only molecules with very high sequence identity can form cross-beta-sheet structures o

132 metabolic pathway, the homologous SnoN (38% sequence identity) catalyzes an epimerization step at th

133 Using >4 kb length and >95% sequence identity criteria, we analyzed of the genome-wi

134 Despite this lack of sequence identity, cross-species transgenesis has identi

135 es can have unique long stretches of perfect sequence identity due to recent genetic exchange.

136 Despite their high amino acid sequence identities, each enzyme produced a different pr

137 These features include regions of perfect sequence identity encompassing 700 bp at the hotspot cor

138 ly related to Desulfatiglans spp. (up to 95% sequence identity; family Desulfarculaceae).

139 functional analog of AM2 but shares only 24% sequence identity for the transmembrane (TM) domain.

140 tionally caution against interpreting genome sequence identity for this pathogen as proof of a direct

141 A particular situation is the high sequence identity found between the Copia25 sequences of

142 istance between NAHR substrate elements, DNA sequence identity (fraction matching), GC content, and c

143 2 TMHs), size (from 183 to 420 residues) and sequence identity (from 15% to 70%), the method improves

144 yltransferase, the closely related RdmB (52% sequence identity) from the rhodomycin pathways is an at

145 sting of 5,696 unique microbial OTUs (at 97% sequenced identity) from 47 bacterial and three archaeal

146 In vitro, these enzymes, which share 78% sequence identity, generate distinct products from their

147 their complex structure, large size and high sequence identity, genetic variation within LCR22s among

148 ptor templates and homologous templates with sequence identity >30% were excluded.

149 eptides that did not cross-react shared high sequence identity (>=50%) with the vaccine peptides, imp

150 pite the lack of a protein structure or high sequence identity homologous templates, the approach suc

151 in paralogs having up to approximately 99.6% sequence identity, identify small gene-disruptive deleti

152 nce databases such as UniProt, with pairwise sequence identities in the range of ~40-60%.

153 homologous recombination at regions of high sequence identity in ATAD3A exon 11 and ATAD3C exon 7.

154 us, Acinetobacter, but instead shows limited sequence identity in its N-terminal half with fungal DSD

155 We identified primers containing 100% sequence identity in multiple species.

156 PRRSV isolates (sharing 55 to 99% nucleotide sequence identity in ORF5).

157 Across species, sequence identity in the SSR-flanking regions was genera

158 5R), which, despite sharing a high degree of sequence identity in the transmembrane region, couple to

159 ansferases (PKMTs) sharing approximately 80% sequence identity in their catalytic domains.

160 Surprisingly, RVD sequence identity influences both the overall stability

161 In this study, we evaluate whether sequence identity, InterPro or Catalytic Site Atlas sequ

162 and encode an integrase, and attachment site sequence identity is carefully noted; therefore, the dat

163 effect on fusion triggering, suggesting that sequence identity is not critical for this function.

164 The effective divergence limit (>25% sequence identity) is not primarily due to protein sites

165 s (LCRs) >10 kb in size and sharing >97% DNA sequence identity, is responsible for the majority of re

166 2,890 operational taxonomic units (OTUs; 97% sequence identity level) including members of all eukary

167 ticidal toxin-like proteins, despite the low sequence identity (<10%).

168 Chd has low sequence identity (<15%) compared with all other protein

169 However, this protein had only low sequence identity (<25%) to the lipoate ligases of demon

170 BH3 binding grooves showed that, despite low sequence identity, M11 has structural similarities to Bc

171 deomycetes, and despite their modest primary sequence identity, many are perceived by the cognate tom

172 refolding of tandem repeats, independent of sequence identity, more than half of all molecules trans

173 Despite their very high sequence identities of 88-98%, these proteins differ dra

174 h the ability to scan and compare amino acid sequence identities of bound class I and II peptides.

175 Based on the sequence identities of enzymes and activity determinatio

176 ata not based on the expected properties and sequence identities of paralogous nuclear encoded mitoch

177 Do the amino acid sequence identities of residues that make contact across

178 the other failed to fold, despite sharing a sequence identity of 49%.

179 ion between the MMP substrate preference and sequence identity of 50-57 discontinuous residues surrou

180 S1 is a SLAMF6 homolog with an amino acid sequence identity of 97% to SLAMF6 in its ligand-binding

181 from 45% to 81% and primarily depend on the sequence identity of aligned target sequences and templa

182 lates of the epidemic period had a very high sequence identity of at least 99.9% and formed a monophy

183 Together, our study shows that DNA sequence identity of genomic binding sites modulates GR

184 Finally, despite the near sequence identity of MtrA in M. smegmatis and M. tubercu

185 Given the near sequence identity of rRNA genes within a species, it is

186 same surface patch on Blo t 1, as well as of sequence identity of surface-exposed residues, suggests

187 Our work reveals the DNA sequence identity of the active centromeres of a premier

188 ermined by peptide length in addition to the sequence identity of the MHCI-bound peptide.

189 The sequence identity of the miRNA provides the specificity

190 The close sequence identity of WW2 with WW1 and WW3 residues that

191 all therapeutics that are within a specified sequence identity over a specified region of the query.

192 Despite limited sequence identity, PilE is structurally similar to Neiss

193 ation, long segmental duplications with high sequence identity pose challenges for long-read mapping.

194 Both clusters contain palindromes with high sequence identity, presumably maintained by gene convers

195 Analysis of sequence identity profiles and phylogenic relationships

196 ve a puzzling drop in accuracy in the 40-60% sequence identity range, the so-called 'BRaliBase Dent'.

197 g approach that uses protein sequences, with sequence identity ranging between 10% and 90%, as an alt

198 ss results in a 16 kb cluster that shares no sequence identity, regulation or organizational principl

199 and, despite these proteins sharing very low sequence identity, structure-based phylogenetic analysis

200 AE1.1 and Bn-FAE1.2 promoters possess strong sequence identity suggesting that transcriptional contro

201 teins due to difficulties in recognizing low-sequence identity templates with a similar fold to the t

202 d fungal cell cycle regulators share no more sequence identity than non-homologous proteins.

203 Despite only 57% amino acid sequence identity, the Ab from a MARV-naive donor recogn

204 Despite low sequence identity, the NHE9 architecture and ion-binding

205 spite their different functions and only 23% sequence identity, the two proteins have very similar ov

206 As yeast duplicates diverge beyond 70% sequence identity, their ability to compensate for each

207 te the high structural similarity with 64.3% sequence identity, their responses to Gd@C82(OH)22 were

208 for naturally occurring neighbours with low sequence identity, these transient misfolds disappear mu

209 ugh both proteins share about 90% amino acid sequence identity, they exhibit different open probabili

210 such depositions, identifying them by a 95% sequence identity threshold, performs analysis of their

211 ur new protocol, and they all exhibited high sequence identities to their corresponding reference gen

212 nate (CHM) hydratase (GalB), which has a 12% sequence identity to a previously identified CHM hydrata

213 al inner spore membrane protein and exhibits sequence identity to A subunits of the spore's nutrient

214 truncatula (MtHPP) was based on the highest sequence identity to A. thaliana enzyme.

215 ltiple calmodulin (CaM) isoforms of variable sequence identity to animal CaM suggested an additional

216 At 88-90% mtCOI sequence identity to Aphelinidae wasps, we concluded tha

217 m distachyon (BdALMT12) that has the highest sequence identity to Arabidopsis thaliana ALMT12.

218 , five genes were found with ~50% amino acid sequence identity to Arabidopsis tryptophan aminotransfe

219 Cat r 1 ( approximately 91% sequence identity to Bet v 7) was cloned from a cDNA lib

220 Many CAZymes share insufficient sequence identity to characterized proteins from other m

221 e hemagglutinin cleavage site which had 100% sequence identity to chicken 28S rRNA, suggesting that t

222 of the mixed lineage kinase family with high sequence identity to Dual Leucine Zipper Kinase (DLK/MAP

223 Three isolates (12%) had 100% sequence identity to each other by 16S rRNA and 99.3 to

224 UBL proteins share little amino acid sequence identity to each other, yet they share similar

225 pts were constructed with a similar level of sequence identity to just 11 SSTs.

226 three-finger toxin (3FTx) family, with high sequence identity to neurotoxins and low identity to the

227 CcmM(S) domains have weak, but significant, sequence identity to RubisCO's small subunit, RbcS, sugg

228 s in crystal structures but lack significant sequence identity to the respective TGR5 sequence, we co

229 veromyces marxianus, which shares 25 and 19% sequence identity to the S. cerevisiae and Homo sapiens

230 used, even when the model shares low (<40%) sequence identity to the template.

231 imeric aconitase repressor AcnR, assigned by sequence identity to the TetR family.

232 rtificially evolved sequences, whose average sequence identity to the wild-type sequences is as low a

233 d, of structures of proteins with detectable sequence identity to them.

234 Their genomes show up to 68% nucleotide sequence identity to Thogoto virus (segment 2; approxima

235 cluding (1) novel strains with <98% 16S rRNA sequence identity to validly described species, (2) clos

236 Because of low sequence identities, understanding the structural basis

237 uences from hexadecane cultures showing high sequence identity (up to 98%) to Desulfatibacillum alken

238 hether ErmC and ErmE, which possess only 24% sequence identity, use similar structural elements for r

239 ity of viral genotypic clusters that had 98% sequence identity, viral sequences showed transient vari

240 The highest sequence identity was found in sequences from the termit

241 ting three templates of different origin and sequence identities, we provide an optimal condition for

242 Given their high degree of sequence identity, we examined whether Hdac1 and Hdac2 w

243 Despite there being low sequence identity, we observed that Scl2.3 globular doma

244 ncoding polypeptides sharing >40% amino acid sequence identity, were expressed in Escherichia coli Fu

245 Protein-coding genes share 93% nucleotide sequence identity, whereas pseudogenes are only 82% iden

246 a classic Tn2 transposon structure with 100% sequence identity, whereas the 'IntI1 type' co-occurred

247 A protein sequences revealed a high level of sequence identity, whereby 99.43% of RGAs fell into seve

248 .1-p21 and is most homologous to CAPN13 (36% sequence identity), which is located 365 kb downstream o

249 g of receptors using templates as low as 20% sequence identity, which accounts for nearly the entire

250 protein (PPE15) that showed weak amino acid sequence identities with mammalian perilipin-1 and was u

251 GFLOMT1 showed the highest sequence identity with 6-O-methyllaudanosoline 4'OMT and

252 ity among closely related homologues (>/=80% sequence identity with a parent) but APRs are more conse

253 tity among homologues that have at least 50% sequence identity with a parent.

254 The three enzymes showed a 57%-71% sequence identity with a proteinase previously cloned fr

255 MppR shares a low, but significant, level of sequence identity with acetoacetate decarboxylase.

256 nce of the alpha2 nAChR subunit and the high sequence identity with alpha4 (78%) and other neuronal n

257 s substrate specificity and 28.5% amino acid sequence identity with an Aspergillus fumigatus entity.

258 a Ghanaian bat isolate (GhV-G) exhibits <30% sequence identity with Asiatic NiV-G/HeV-G.

259 Plant GSALDHs share very low-sequence identity with bacterial, fungal, and animal GSA

260 an acidic lipid binding protein, shares high sequence identity with beta- and gamma-synuclein.

261 sin complexes; masseter myosin, which shares sequence identity with beta-cardiac myosin-heavy chain,

262 We identified a novel gene based on its sequence identity with ccm2, which we have named ccm2-li

263 ne/threonine protein kinases that exhibit no sequence identity with conventional eukaryotic protein k

264 evertheless, the maximum pairwise amino acid sequence identity with currently recognized flaviviruses

265 ough this protein only has approximately 20% sequence identity with eukaryotic actin, phylogenetic an

266 They share 19 to 21% sequence identity with firefly luciferases, which produc

267 tein A (CENP-A), shares about 50% amino acid sequence identity with H3.

268 opsis encodes an enolase with 72% amino acid sequence identity with human ENO1.

269 AncFMO1, sharing 89.5% sequence identity with human FMO1, was successfully expr

270 e-dominant chicken RPE65 (cRPE65) shares 90% sequence identity with human RPE65 (hRPE65) but exhibits

271 s, which typically share high structural and sequence identity with IrisFP.

272 son revealed that the Bph32 gene shares 100% sequence identity with its allele in Oryza latifolia.

273 ing only 61.1% (whole genome) and 63.1% (L1) sequence identity with its closest relative in the Papil

274 g resistance genes with sequences having low sequence identity with known sequences.

275 coding for proteins sharing high amino acid sequence identity with members of the Ros/MucR transcrip

276 cid substitutions out of a total of 504 (97% sequence identity with native).

277 GFLOMT2 displayed the highest amino acid sequence identity with norlaudanosoline 6-OMT, showed a

278 ntatively named BoNT/X, which has the lowest sequence identity with other BoNTs and is not recognized

279 a-lactamases, the CTX-M family possesses low sequence identity with other enzymes.

280 Although ALDH1A3 shares high sequence identity with other members of the ALDH1A famil

281 hei ENT1 (PbENT1) shares only 60% amino acid sequence identity with PfENT1, we sought to characterize

282 trains 11a and 11a5 share 100% 16S rRNA gene sequence identity with previously sequenced Dhc strains

283 ic characterization of the ISPs is a lack of sequence identity with proteins of known structure or fu

284 enzyme: firstly by mutating RadA to increase sequence identity with RAD51 in the BRC repeat binding s

285 BbdA shows low amino acid sequence identity with reported amidases and is encoded

286 l despite retaining as low as 30% nucleotide sequence identity with rpoA genes from outgroups in the

287 COI gene of the Japanese specimen shared 99% sequence identity with the Bemisia 'JpL' genetic group.

288 hogen Pseudomonas aeruginosa shares over 84% sequence identity with the corresponding elongation fact

289 Hxs2) in Cryptococcus that share the highest sequence identity with the glucose sensors Snf3 and Rgt2

290 terminal transactivation (C-TAD) shared high sequence identity with the human HIF-1alpha and HIF-2alp

291 Ig-V)-like fold, despite sharing very little sequence identity with the Ig-V superfamily.

292 Whereas ABCB4 shares high sequence identity with the multidrug transporter, ABCB1,

293 toxin was found to share only 87% amino acid sequence identity with the nearest Stx1 subtype referenc

294 toxin family, sharing only 30-40% amino acid sequence identity with the others.

295 treptomyces scabies Scabin shares nearly 40% sequence identity with the Pierisin family of mono-ADP-r

296 in particular shares virtually no amino acid sequence identity with the residues that have been repor

297 e c-type cytochrome domain of cN shares high sequence identity with those localized c-terminally in c

298 (PB2, PB1, PA, HA, NA, and NS) sharing >99% sequence identity with those of H7N8 turkey isolates was

299 eceptor-binding protein (G) shares only ~30% sequence identity with those of NiV and HeV, although th

300 Specificity was defined by 100% amino acid sequence identity with tick-borne pathogen proteins, evo

301 ions, and gene conversions which disrupt DNA sequence identity within IBD segments, and it can be app

302 IRAK family proteins and TAK1 have high sequence identity within the ATP-binding pocket, limitin

303 paramyxoviruses, these domains share little sequence identity yet are similar in length and structur