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1 teric control of proteins provides a tool to shine a light on the complex cascades of cellular proces
5 e parallel epidemics of obesity and diabetes shine a spotlight on the potential for therapeutic manip
6 ctural reconstruction mechanism in this work shines a light on new materials and structural design th
7 e scale research in marine biology, but also shines a new light on big biology, suggesting new ways t
11 compatible with statistical decision theory, shining a new light on the old questions of how such jud
13 nano-bioreplicated surfaces were verified by shining a white laser on the decoys in a dark room and p
15 the physical world, recent decoding work has shone a light on how the brain instantiates internally g
16 the southern hemisphere illuminated by Pluto-shine and also images taken during the approach phase th
19 is(p-tolyl)-1,2-dioxin (1g) was suggested by Shine and Zhao as a product in an electron-transfer (ET)
21 th cases the crystals take the form of black shining blades and are indistinguishable by optical micr
23 kable rates and active galactic nuclei (AGN) shone brightly as a result of accretion onto black holes
24 ralis and its specialist brood parasite, the shining bronze-cuckoo Chalcites lucidus in New Caledonia
25 e IYCF and WASH interventions implemented in SHINE caused clinically important improvements in child
26 in MYH6 accounting for approximately 11% of Shone complex, and dominant FLT4 mutations accounting fo
30 one AAG) that surround and overlap the trpP Shine-Dalgarno (S-D) sequence and translation start codo
31 leading to extended interaction between the Shine-Dalgarno (SD) and anti-SD sequences compensate for
32 d downstream of the initiation codon, called Shine-Dalgarno (SD) and downstream box (DB) sequences, r
33 tif in the 5' UTR of toxT, with a fourU anti-Shine-Dalgarno (SD) element that base pairs with the SD
34 like 70S ribosome complex containing an 8-bp Shine-Dalgarno (SD) helix was determined at 3.8-A resolu
37 ndent RNA structure that sequesters the trpE Shine-Dalgarno (SD) sequence (the SD blocking hairpin).
38 not bind mRNA with the wild-type, canonical Shine-Dalgarno (SD) sequence and (iii) minimally interac
39 signals: a slippery sequence (A AAA AAG), a Shine-Dalgarno (SD) sequence and a downstream hairpin.
40 A, resulting in the sequestering of the anti-Shine-Dalgarno (SD) sequence and freeing the SD for tran
41 karyotic genomes between the presence of the Shine-Dalgarno (SD) sequence and other gene features, in
42 to many mRNAs through base pairing with the Shine-Dalgarno (SD) sequence and RNA binding by ribosoma
43 rearrangement in the RNA that sequesters the Shine-Dalgarno (SD) sequence by pairing with a complemen
44 structural rearrangement that sequesters the Shine-Dalgarno (SD) sequence by pairing with an anti-SD
45 DNA sequencing uncovered a mutation in the Shine-Dalgarno (SD) sequence for gIIp, a protein involve
46 (5'-GAGGAGG-3') that resemble the consensus Shine-Dalgarno (SD) sequence found at translation initia
47 ventionally leadered lacZ with and without a Shine-Dalgarno (SD) sequence in Escherichia coli and fou
48 RNAs by forming a duplex that sequesters the Shine-Dalgarno (SD) sequence or start codon and prevents
49 regulation originates from occlusion of the Shine-Dalgarno (SD) sequence upon ligand binding; howeve
50 bosome to a translational start site are the Shine-Dalgarno (SD) sequence within the untranslated lea
52 onstrate that, in the absence of an upstream Shine-Dalgarno (SD) sequence, PoTC breakdown proceeds in
53 t sequesters a sequence complementary to the Shine-Dalgarno (SD) sequence, thus freeing the SD sequen
54 sembled on an mRNA with and without a strong Shine-Dalgarno (SD) sequence-a sequence found just upstr
61 uctures with various stabilities and contain Shine-Dalgarno (SD) sequences of different strengths.
62 teractions with the 3' end of 16S rRNA, mRNA Shine-Dalgarno (SD) sequences positioned upstream of ope
63 rial lineages such as the Bacteroidetes lack Shine-Dalgarno (SD) sequences, and yet with few exceptio
64 y RNAs would be predicted to occlude the rot Shine-Dalgarno (SD) site and to block rot translation.
65 ficiency and cis-regulatory features such as Shine-Dalgarno (SD) strength and RNA secondary structure
66 frameshifting in translation of dnaX mRNA: a Shine-Dalgarno (SD)-like sequence, a double-shift site,
67 (stem-loop) and two others mapped just 5' to Shine-Dalgarno (SD)-like sequences located immediately u
68 ound E-site tRNA and the Shine-Dalgarno-anti-Shine-Dalgarno (SD-aSD) interaction on A-site tRNA inter
70 R, including the terminator 5'-stem-loop and Shine-Dalgarno blocking hairpins, demonstrated 5'-tripho
71 NA (mRNA/rRNA elements forming the bacterial Shine-Dalgarno duplex) also resembles elements of the ba
73 t the espADB leader region contains a strong Shine-Dalgarno element (SD2) and a translatable mini-ORF
74 mRNA translation not only by binding to the Shine-Dalgarno element but also by base pairing anywhere
76 mobilities of features interacting with the Shine-Dalgarno helix are decreased in the presence of th
77 ting the proposal that that formation of the Shine-Dalgarno helix during initiation may contribute to
79 o helix are decreased in the presence of the Shine-Dalgarno helix, supporting the proposal that that
81 less stringent in the RF2 context, as if the Shine-Dalgarno interaction can help stabilize a quasi-st
84 ons because they terminate either within the Shine-Dalgarno or coding sequence of the next gene on th
85 signal extracted by computer analysis was a Shine-Dalgarno pattern matching the complementary sequen
89 site shows little homology to the canonical Shine-Dalgarno ribosome recognition sequence, but the re
91 nism to compensate for the lack of a classic Shine-Dalgarno rRNA interaction in the translation of so
92 ely), followed by stop codon context and the Shine-Dalgarno sequence (3.7-5.1% and 1.9-3.8%, respecti
93 tiary KL interaction directly sequesters the Shine-Dalgarno sequence (i.e., the ribosome binding site
94 preQ(1)-binding pocket through the adjoining Shine-Dalgarno sequence (SDS) and include A-minor motifs
97 nce element upstream of the start codon (the Shine-Dalgarno sequence [SD]) and a complementary sequen
98 ion by CsrA involves binding directly to the Shine-Dalgarno sequence and blocking ribosome binding.
100 ations in CsrA binding sites overlapping the Shine-Dalgarno sequence and initiation codon partially r
101 that this translation initiates from a weak Shine-Dalgarno sequence and is facilitated by a putative
102 ocessing occurs just upstream of a consensus Shine-Dalgarno sequence and results in the removal of 54
103 a stem-loop structure upstream of the CC3461 Shine-Dalgarno sequence and stabilizes the transcript.
104 d charged-tRNA(Trp) deficiency to expose the Shine-Dalgarno sequence and start codon for the AT prote
106 and stimulates translation by releasing the Shine-Dalgarno sequence and start site from a stable sec
107 d CsrA prevents ribosome binding to the glgC Shine-Dalgarno sequence and that this reduces GlgC synth
108 omes were identified, the "AGGA" core of the Shine-Dalgarno sequence and the "A-rich" sequence locate
109 tain fragmented operator sites such that the Shine-Dalgarno sequence and the initiation codon of the
110 inding to a 19 nt RNA hairpin containing the Shine-Dalgarno sequence and the initiation codon of the
111 sumptive TRAP binding site overlaps the yhaG Shine-Dalgarno sequence and translation initiation regio
112 d a hairpin structure that can sequester the Shine-Dalgarno sequence are necessary for cobalamin-depe
114 the leader nucleotides just upstream of the Shine-Dalgarno sequence but is conflicted on the questio
115 epended also on ribosome binding to a nearby Shine-Dalgarno sequence but was independent of downstrea
116 get site of glgC that lies upstream from the Shine-Dalgarno sequence did not affect regulation by HD-
117 anslation as independent elements, e.g., the Shine-Dalgarno sequence in prokaryotes, the rRNA-binding
118 ort that three-base substitutions around the Shine-Dalgarno sequence in the 159-base 5'-untranslated
119 ed expression in the absence of a leader and Shine-Dalgarno sequence indicated that stimulation by CA
120 target (translational operator), but that a Shine-Dalgarno sequence is not required for specificity.
121 A operator sites, including one in which the Shine-Dalgarno sequence is positioned 4 nt outside the c
122 otes refolding of the RNA such that the trpE Shine-Dalgarno sequence is sequestered in a hairpin, thu
123 proximal to regulatory features such as the Shine-Dalgarno sequence is sufficient to enable regulati
126 otential CsrA binding site that overlaps the Shine-Dalgarno sequence of hfq, a gene that encodes an R
127 o analyzed the 350-bp region upstream of the Shine-Dalgarno sequence of norA by gel mobility shift ex
128 of 3-methyl-3-buten-1-ol by engineering the Shine-Dalgarno sequence of nudB, which increased protein
129 pseudoknot, occur to sequester the putative Shine-Dalgarno sequence of the RNA only after metabolite
131 bstantial number of genes overlap either the Shine-Dalgarno sequence or the coding sequence of the ne
134 ether with the contribution of 16S rRNA anti-Shine-Dalgarno sequence pairing with GAG, facilitates pe
135 , different segments of the single consensus Shine-Dalgarno sequence serve the two translational star
136 -terminal region immediately upstream of the Shine-Dalgarno sequence that contributes to formation of
137 Addition of an untranslated lac leader and Shine-Dalgarno sequence to cI increased expression but s
139 tends to be compensated by mutations in the Shine-Dalgarno sequence towards a stronger translation i
140 mRNA) contained the frameshifting signals: a Shine-Dalgarno sequence, a slippery sequence, and a down
141 ted region of the psbA mRNA that disrupt the Shine-Dalgarno sequence, acting as a ribosome binding si
143 modimer to the 5'UTR of an mRNA occludes the Shine-Dalgarno sequence, blocking ribosome access for tr
144 e found either in or upstream of the gene II Shine-Dalgarno sequence, but still within the mRNA trans
145 des of the mRNA, immediately upstream of the Shine-Dalgarno sequence, explains the protein's role in
146 close to the AUG, including over a potential Shine-Dalgarno sequence, have little effect on Fis prote
147 n RNA hairpin at a distance of 9 nt from the Shine-Dalgarno sequence, implying that a discrete region
149 ryotes, whereas the CCUCC, known as the anti-Shine-Dalgarno sequence, is conserved in noneukaryotes o
150 otes refolding of the RNA such that the trpE Shine-Dalgarno sequence, located more than 100 nucleotid
151 re resistant to viomycin indicating that the Shine-Dalgarno sequence, or other features contained wit
152 Because the recJ gene lacks a canonical Shine-Dalgarno sequence, other unknown features of the m
154 econdary stem-loop structure that blocks the Shine-Dalgarno sequence, preventing ribosome access and
155 in the absence of an untranslated leader and Shine-Dalgarno sequence, the streptomycete cat mRNA is t
156 by binding to a site that overlaps the trpG Shine-Dalgarno sequence, thereby blocking ribosome bindi
157 airing with a short sequence overlapping the Shine-Dalgarno sequence, thereby blocking ribosome bindi
159 erlaps with that of the messenger RNA (mRNA) Shine-Dalgarno sequence, which prevents the interaction
178 rocessed equally by RegB; those found at the Shine-Dalgarno sequences and in intercistronic regions a
183 ferential translation of specific mRNAs, the Shine-Dalgarno sequences of which do not play a critical
184 hia coli mRNAs, particularly those with weak Shine-Dalgarno sequences or structured 5' UTRs, in addit
185 e 3' end of the 16S ribosomal rRNA (internal Shine-Dalgarno sequences), there is an increased probabi
186 s with structured standby sites, upstream of Shine-Dalgarno sequences, and show that these interactio
187 t the deep learning models learn to identify Shine-Dalgarno sequences, deprioritize the wobble positi
188 We describe in detail programs for finding Shine-Dalgarno sequences, resources used for confident i
189 ferent translational stages: (i) initiation, Shine-Dalgarno sequences, start codon identity, and star
190 ing profiling on ribosomes with altered anti-Shine-Dalgarno sequences, we reveal a genome-wide correl
194 secondary structure: a loop with projecting Shine-Dalgarno site and well-defined stem that interacts
195 y of a hairpin stem comprising the coat gene Shine-Dalgarno site was incrementally increased, there w
196 /G-any nucleotide) often associated with the Shine-Dalgarno translation initiation sequence in mRNAs.
198 iple sources, sequence motifs (promoters and Shine-Dalgarno), microarray data, multi-genome alignment
199 s appear not to use a ribosome-binding site (Shine-Dalgarno)-based mechanism for translation initiati
201 sed on the role of bound E-site tRNA and the Shine-Dalgarno-anti-Shine-Dalgarno (SD-aSD) interaction
203 y programmed into the coding sequence, where Shine-Dalgarno-like elements trigger elongation pauses a
207 n the premature aging disorder Progeria is a shining example of the impact that studies of rare disea
211 d integrated longitudinal intervention for a SHINE household as it expects (during pregnancy) and the
213 connection between the points of light that shine in the night sky and the diffuse and abundant cell
214 ve fragment ion series, UniSpec particularly shines in generating more complex MS2 spectra with diver
217 will increase understanding of the impact of SHINE interventions, and the generalizability of our fin
222 s approaches that we and others have used to shine light into these previously dark corners of the hu
224 e studies of the Btbd9 mutant mice will help shine light on its role in the pathophysiology of RLS.
225 functional genomic technology have begun to shine light on such gene network problems at both transc
227 ll-defined heparan sulfate structures helped shine light on the fine substrate specificities of biosy
228 iglio et al. and Gruber et al. have begun to shine light on the immune drivers of this enigmatic dise
229 ization of chromosome fragmentation may also shine light on the mechanism of chromosomal pulverizatio
231 the existence of secondary binding sites and shine light on the preference for intramolecular rather
233 udied substrate binding by these two CBMs to shine light on their functional variation and determined
235 In this issue of JCI, Rokavec and colleagues shine light on this murky aspect of tumor biology by foc
238 The study of photon-induced materials growth shines light on the rational design of complex nanostruc
241 solution microscopy for neuroscience lies in shining light on the nanoscale structures and biochemica
243 peech and audio, whereas recurrent nets have shone light on sequential data such as text and speech.
246 atory systems, with a promising potential to shine new light on environmental microbial and chemical
247 alence of renal biopsy in various regions to shine new light on the pathogenesis of various renal dis
249 perties of these membraneless organelles and shines new light on neurodegenerative diseases, which ma
251 neoformans glucosylceramide (GlcCer) mutant shines new light on the initiation of cryptococcal infec
253 g and in deciphering the 'tubulin code' have shone new light on this cytoskeletal network and its rol
254 anslucent protective shell ensures the vivid shine of the blue stripes, which can be perceived under
260 Stroke Hyperglycemia Insulin Network Effort (SHINE) randomized clinical trial included adult patients
261 photosensitizer (PS) with the photoCORM and shining red light, energy transfer occurs from triplet e
263 l (hazard ratio 4.76, 95% CI 1.59 to 14.30), Shone's syndrome (hazard ratio 3.68, 95% CI 1.14 to 11.8
265 (Arabidopsis thaliana) transcription factor, SHINE (SHN), in rice (Oryza sativa), a model for the gra
266 s and ribosomes in functional binding states shine some light on this fundamental life-sustaining pro
268 Whereas most of the literature on this topic shines the spotlight toward melanocytes, the focus of th
275 n air, was scanned, and the magnitude of the shine-through was quantified from the PET images for var
277 ch is better than the constraints from Light-Shining-through-a-Wall experiments while not exceeding t
288 anitation Hygiene Infant Nutrition Efficacy (SHINE) trial in Zimbabwe is evaluating the independent a
289 anitation Hygiene Infant Nutrition Efficacy (SHINE) trial is designed to measure the independent and
290 anitation Hygiene Infant Nutrition Efficacy (SHINE) trial is motivated by the premise that environmen
291 anitation Hygiene Infant Nutrition Efficacy (SHINE) trial, we utilize the concept of maternal capabil
292 ation Hygiene and Infant Nutrition Efficacy (SHINE) Trial, we utilize the program impact pathway (PIP
294 rowth was detected by fluorescence caused by shining UV light (lambda = 365 nm) onto the indicator on
296 so, the single crystal shows photocurrent on shining visible light at no external bias, exhibiting an
297 aser diode with a digital micromirror device shining visible light onto silicon acts as the spatial T
300 t twenty-three known satellite galaxies that shine with luminosities ranging from about a thousand to