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1 ation and dissociation of the RNA polymerase sigma factor.
2 so called RpoS), the general stress response sigma factor.
3 romoter that is controlled by an alternative sigma factor.
4 the very rapid increase in the level of RpoS sigma factor.
5 nearby promoters in the case of retaining a sigma factor.
6 anscription of sigR, encoding an alternative sigma factor.
7 reinitiation, increases with supplement of a sigma factor.
8 out displacement of the promoter recognition sigma-factor.
9 show a protein interacting with the NCR of a sigma-factor.
10 egion characteristic of a new family of anti-sigma factors.
11 d by a cascade of alternative RNA polymerase sigma factors.
12 cialized stress responses involving multiple sigma factors.
13 omprises 41 direct interactions among all 13 sigma factors.
14 ii) distinct communities containing multiple sigma factors.
15 ologous promoters by expressing heterologous sigma factors.
16 ia requires specific promoter recognition by sigma factors.
17 s (TCSs) and extracytoplasmic function (ECF) sigma factors.
18 ing a unique network topology of interacting sigma factors.
19 and are involved in the interaction with the sigma factors.
20 ctors called extracytoplasmic function (ECF) sigma factors.
21 esent the largest and most diverse family of sigma factors.
22 ext of putative regulators of cyanobacterial sigma factors.
23 s increase the activity of other alternative sigma factors.
24 y to bind and unwind promoter DNA as primary sigma factors.
25 s selectively to group 1 and certain group 2 sigma-factors.
26 (NCR), which is present only in housekeeping sigma-factors.
27 gma-factors are negatively regulated by anti-sigma-factors.
28 sights that led to the original discovery of sigma factor 50 years ago and the subsequent discovery o
31 ve feedback regulation insulates alternative sigma factor activity from competition with the housekee
32 igma-core interface to differentially affect sigma factor activity, and thereby alter the transcripti
33 ctivation for sub-groups of extracytoplasmic sigma factors adding to previous successes on bacterial
36 ve in the polar flagellum biosynthesis FliAP sigma factor also outcompeted WBWlacZ but not to the sam
37 ector between sigmaR2 and sigmaR4 of the ECF sigma factor-although shorter and unrelated in sequence-
38 RNAP in vivo and in vitro, independently of sigma factor and away from the main nucleic-acids-bindin
40 otein, PhyR, which functions as an anti-anti-sigma factor and regulates transcription of genes requir
41 idy arises through mutation of the mucA anti-sigma factor and subsequent activation of the AlgU regul
42 a sequence-specific interactions between the sigma factor and the promoter DNA while moving downstrea
43 emerged as the largest group of alternative sigma factors and one of the three major pillars of sign
45 single bacterial genome can encode > 100 ECF sigma factors, and combined with their cognate anti-sigm
46 ows the same path through RNAP as in primary sigma factors, and show that the ECF sigma factor uses t
47 d -35 promoter components specific to sigma (sigma) factors, and 5'-untranslated region as a determin
48 by a mechanism distinct from that of classic sigma factor antagonists (anti-sigma factors), which bin
49 ough proteolysis of three transmembrane anti-sigma factors, anti-SigK, -L, and -M, but there are also
63 transcription initiation, while alternative sigma-factors are used to coordinate expression of addit
64 ma factors, the largest class of alternative sigma factors, are related to primary sigma factors, but
65 and the subsequent discovery of alternative sigma factors as a ubiquitous mechanism of bacterial gen
69 native sigma factors, are related to primary sigma factors, but have simpler structures, comprising o
70 cription requires recognition of appropriate sigma-factors by the core enzyme (core2: alpha2betabeta'
71 ance mechanisms using a group of alternative sigma factors called extracytoplasmic function (ECF) sig
72 gs establish a mechanism whereby the primary sigma factor can exert direct effects on the composition
75 the absence of either component of the anti-sigma factor complex leads to toxic levels of SigM and s
76 tial expression of extracytoplasmic function sigma factors, components of the type IX secretion syste
77 In Streptococcus mutans, the alternative sigma factor ComX controls entry into genetic competence
78 ring competence development, the alternative sigma factor ComX is activated, which in turn, initiates
80 ivating sigma(70) -dependent and alternative sigma factor-dependent genes required for stress surviva
82 onally regulates the general stress response sigma factor differently than what was described for oth
84 pecificity code of extracytoplasmic function sigma factors (ECF sigmas), a major family of bacterial
85 obacterial genomes typically encode multiple sigma factors, effective execution of metabolic engineer
87 studies on how gene regulatory proteins and sigma factors exert control of gene expression in B. bur
88 Conversely, significant changes in specific sigma factor expression were only observed upon adaptati
90 Here, we show that the Group 3 alternative sigma factor F (SigF) plays a pleiotropic role in Synech
92 PbifA promoter is dependent on the flagellar sigma factor FliA, and positively regulated by ppGpp and
93 ivity from competition with the housekeeping sigma factor for RNA polymerase and allows multiple stre
100 involves signalling through the alternative sigma factor FroR, and does not require known surface se
101 ional control in B. burgdorferi, and address sigma factor function and specificity, we developed an i
102 tuberculosis pathogenesis, we targeted a key sigma factor gene, sigL, activated in mycobacterium-infe
103 egions to different transcription factor and sigma-factor genes, resulting in perturbations that span
105 eptor HasR is required for activation of the sigma factor HasI and upregulation of has operon express
106 blotting, we show that the activation of the sigma factor HasI requires heme release from the hemopho
108 om the rrn promoter by both the housekeeping sigma factor holoenzyme (Esigma(70) ) and the stress sig
109 ctor holoenzyme (Esigma(70) ) and the stress sigma factor holoenzyme (Esigma(S) ) in vitro, but has a
110 alignments of CsrR orthologs and other anti-sigma factors identified a CsrR-specific region characte
111 We present the first analysis of an ECF15 sigma factor in a vector-borne human pathogen and conclu
115 ls an unprecedented role for a transcription sigma factor in spatially coordinating the negative feed
118 ulatory interactions between M. tuberculosis sigma factors in an E. coli model system, validation of
121 Despite the central role of alternative sigma factors in bacterial stress response and virulence
125 ork was to determine the role of alternative sigma factors in the stress response of V. parahaemolyti
126 onse to environmental or developmental cues, sigma factors initiate the transcription of necessary ge
127 polymerase (RNAP) binding to a promoter, the sigma factor initiates DNA strand separation and capture
128 RNA polymerase (RNAP) holoenzyme containing sigma factor initiates transcription at specific promote
129 say to test how gene regulatory proteins and sigma factors interact with RNA polymerase to direct tra
135 d and the hydrolysis of periplasmic CSS anti-sigma factors is widely observed, we hypothesize that cl
136 codes sigma(V), an extracytoplasmic function sigma factor, is induced by lysozyme, which damages the
138 bridges between the Rip1 PDZ domain and anti-sigma factor M (Anti-SigM), a Rip1 substrate, but not An
140 eeds through the partner-switching PhyR-EcfG sigma-factor mechanism and is involved in multiple life
141 ytoplasmic function sigma factor (MibX)/anti-sigma factor (MibW) complex and an additional transcript
142 a pathway-specific extracytoplasmic function sigma factor (MibX)/anti-sigma factor (MibW) complex and
144 Here we report the role of a predicted anti-sigma factor, MSMEG_6129 and a predicted eukaryotic like
145 lity of catalase and general stress response sigma factor mutants confirmed the synergy of the three
146 loroplast transcription in photoreceptor and sigma factor mutants under controlled light regimes in A
147 s governed by an alternative transcriptional sigma factor named sigma(S) (RpoS) that associates with
148 e organized into three regulons based on the sigma factor needed for their transcription (RpoD [sigma
149 uding the sigma factor sigma(EcfG), its anti-sigma factor NepR, and the anti-anti-sigma factor PhyR.
152 he operational, and functional states of the sigma factor network in Geobacter sulfurreducens, reveal
153 he interplay between different levels of the sigma factor network organization is fundamental to char
154 res show that sigmaR2 and sigmaR4 of the ECF sigma factor occupy the same sites on RNAP as in primary
156 tablishes a model in which the activity of a sigma factor of group ECF56, regulates morphogenesis and
157 point mutations in genes encoding the major sigma factor of RNA polymerase (sigA), a cell shape-dete
158 hiD interacts with domain 4 of the principal sigma factor of Streptomyces, sigma(HrdB) (sigma(HrdB) (
160 Because extracytoplasmic function (ECF) sigma factors often regulate adaptation to environmental
163 egulation and coregulation of sigma and anti-sigma factor pairs, provides structural information that
165 ic event, which is widespread among CSS anti-sigma factors, produces two distinct domains that intera
166 economical and exquisite control of the ECF sigma factor protein level for the proper cell different
167 overy of the extracytoplasmic function (ECF) sigma factors, proteins that subsequently emerged as the
169 hibits the expression of the iron-starvation sigma-factor PvdS, thereby repressing the production of
171 six conserved functional modules in primary sigma factors: region 2 (sigmaR2) and region 4 (sigmaR4)
172 omponent signal transduction and alternative sigma factor regulation to control transcription of gene
176 an uncharacterized extracytoplasmic function sigma factor regulon, an event that has been reported to
177 5 components enables us to predict potential sigma-factor regulons, along with various spacer lengths
183 the promoter specificity of the housekeeping sigma factor RpoD to promoters encoding previously ident
184 that a previously unstudied B. quintana ECF sigma factor, RpoE, is involved in the transition from t
185 the extracytoplasmic function RNA polymerase sigma factor RpoE2 consensus sequences displayed a sharp
186 Neisseria elongata as a model, we show that Sigma factor RpoN (sigma(54)), Integration Host Factor,
191 trikingly, overproduction of the alternative sigma factor rpoS and of the regulatory gene gadE result
193 n Borrelia burgdorferi (Bb), the alternative sigma factor RpoS plays a central role during Bb's adapt
194 the stationary phase by the stationary-phase sigma factor RpoS, which was also reduced dramatically u
201 te expression of the general stress response sigma factor, RpoS, through direct interactions with an
202 s partially mediated by the stationary phase sigma factor, RpoS, which was also shown to positively r
203 its anti-sigma factor RsbW and the anti-anti-sigma factor RsbV plays a critical role in shaping the n
204 RsbU and RsbP phosphatases or the anti-anti-sigma factor RsbV, all of which contribute to posttransl
205 y of the synthesis rates of sigmaB, its anti-sigma factor RsbW and the anti-anti-sigma factor RsbV pl
207 is, that in an eep deletion mutant, the anti-sigma factor RsiV is only partially degraded after lysoz
209 the anti-sigma factors for several other ECF sigma factors, RsiV is degraded by a multistep proteolyt
210 the proteins purified, the SigT cognate anti-sigma factor RstA ranked the top with the most total ind
211 occupy the same sites on RNAP as in primary sigma factors, show that the connector between sigmaR2 a
212 ion of genes for the nuclear encoded plastid sigma-factors, SIG1-6, which code for components of the
219 Bacillus subtilis extracytoplasmic function sigma factor SigM regulates genes for cell wall synthesi
221 the activity of the general stress response sigma factor sigma(B) in individual cells during biofilm
222 stress response (GSR) system, including the sigma factor sigma(EcfG), its anti-sigma factor NepR, an
223 of the alternative extracytoplasmic function sigma factor sigma(EcfG), which redirects transcription
224 roduced under the control of the sporulation sigma factor sigma(F) to create a negative feedback loop
229 rA utilizes its hydrophobic core to bind the sigma factor sigma(R) preventing its association with RN
230 led by the major stationary phase and stress sigma factor sigma(S) (RpoS), and also indirectly regula
231 he rpoS gene, which encodes a general stress sigma factor sigma(S), as a model system, and show that
234 ezuelae through sequestering the sporulation sigma factor sigma(WhiG) and presents the crystal struct
235 to facilitate competition of the alternative sigma factor sigma(X) for access to core polymerase.
236 proteins, and the second on the alternative sigma factor sigma(X), which directs the expression of t
237 ubtilis, the extracytoplasmic function (ECF) sigma factors sigma(M) , sigma(W) and sigma(X) all contr
238 ng domains to activate the mRNAs of both the sigma-factor sigma(S) and the RicI protein, a previously
240 ed for formation of a complex with the major sigma factor (sigma(A)) and reaction with NO disassemble
241 ng elevated expression of the general stress sigma factor (sigma(B)) regulon, which is required for C
243 regulator, SigX (sigma(Chi)), an alternative sigma factor (sigma), and a competence co-regulator, Com
244 showed a decrease in binding affinity to the sigma-factors (sigma(70), sigma(32) and sigma(38)) compa
245 in triggering dissociation of the alternate sigma factor, sigma(28), from a nonfunctional sigma(28)-
246 coli, the HSR is regulated by an alternative sigma factor, sigma(32) , which is encoded by the rpoH g
254 enus Streptococcus depends on an alternative sigma factor, sigma(X), for coordinated synthesis of 23
255 by two distinct classes of sequence-specific sigma factors, sigma(70) or sigma(54), that differ both
258 erminal domain of the sigma70-family primary sigma factor sigmaA of M. tuberculosis containing the co
262 fascinating biological problems (alternative sigma factors, sporulation, swarming, biofilm formation,
269 gma(V) is an extracytoplasmic function (ECF) sigma factor that is found exclusively in Firmicutes inc
270 e 5'-triphosphate of the nascent RNA and the sigma factor that may function to stabilize the short RN
272 RsrA is an archetypal zinc-binding anti-sigma factor that responds to disulfide stress in the cy
273 bacteria, sigma(28) is the flagella-specific sigma factor that targets RNA polymerase (RNAP) to contr
274 esults explain how Crl distinguishes between sigma factors that are largely homologous and activates
276 d from analyzing ChrR, a zinc-dependent anti-sigma factor, that are generally applicable to Group IV
277 the general stress response is a specialized sigma factor, the promoter specificity subunit of RNA po
279 of the best-studied examples of alternative sigma factors: the sigmaB network that controls the gene
280 actors, and combined with their cognate anti-sigma factors, they represent a modular design that prim
281 ma factors), which bind directly to a target sigma factor to prevent its association with RNA polymer
282 concerning the light environment by a single sigma factor to regulate chloroplast transcription.
283 gative regulator of RpoE that sequesters the sigma factor to regulate gene expression based on condit
286 or RNA polymerase and allows multiple stress sigma factors to function simultaneously with little com
289 ce of unstructured omega, the association of sigma-factors to the core is less efficient, suggesting
290 AS-regulated extracytoplasmic function (ECF) sigma factor, to couple the secretory activity of the T3
291 atory categories-including stress-associated sigma factors, transcription factors, and toxin-antitoxi
292 primary sigma factors, and show that the ECF sigma factor uses the same strategy to bind and unwind p
293 plasmic function (ECF) family of alternative sigma factors: VP0055, VP2210, VP2358, VP2578, and VPA16
294 We have demonstrated here that one such sigma factor, VP2578, a homologue of RpoE from Escherich
296 at of classic sigma factor antagonists (anti-sigma factors), which bind directly to a target sigma fa
298 wo stress responses that depend on bacterial sigma factors with different mode of transcription initi
299 he activity of SigM is regulated by its anti-sigma factor, YhdL, and the accessory protein YhdK.
300 promoter escape model using a two-component sigma factor YvrI and YvrHa from Bacillus subtilis that