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1 novel functional components of the splicing silencer.
2 ypersensitivity (DHS) site located 3' to the silencer.
3 lement 1), can act as both an enhancer and a silencer.
4 s self-perpetuating independently of the Cd4 silencer.
5 pears to overcome inhibition mediated by the silencer.
6 in mice harboring point mutations in the Cd4 silencer.
7 s may similarly disrupt function of the ESS1 silencer.
8 e of Sir proteins and, in part, on the HMR-I silencer.
9 development and in DN cells lacking the CD4 silencer.
10 (MycG4) that functions as a transcriptional silencer.
11 s a G4 (MycG4) which acts as a transcription silencer.
12 ne c-MYC promoter region functions as a gene silencer.
13 ency responders and Class II sRNAs acting as silencers.
14 pressive features that may act as long-range silencers.
15 d photocurrents three times those of earlier silencers.
16 spread from these sites independently of the silencers.
17 the internal regions of HMR as well as with silencers.
18 ns were recombinationally separated from the silencers.
19 nteracted with Sir1 and recruits Sir1 to the silencers.
20 nhancers or create predicted exonic splicing silencers.
21 for ARS318 (HMR-I), which is one of the HMR silencers.
22 ents (REs) such as enhancers, repressors and silencers.
23 ilencers exhibit characteristics expected of silencers.
24 as carriers for chemotherapy agents and gene silencers.
25 bound by more transcription factors than non-silencers.
26 gypsy LTR retrotransposon in P3 which act as silencers.
28 e-dimensional structure of the exon splicing silencer 3 (ESS3) from HIV-1 has been determined using N
30 iption factor-binding site and abrogates the silencer activity in luciferase assays, an effect mimick
33 croRNA, including miR1, which exerted robust silencer activity over the induction of GATA-6 leading t
34 rotein CTCF to the target promoters, and the silencer activity requires the binding of the REST/NRSF
35 ind that 41.5% of ~7500 tested elements show silencer activity using massively parallel reporter assa
37 ed silencing and interacted with core miRISC silencers Ago2 and Rck/p54 in an RNA-dependent manner an
38 We also discovered that, although the HMR-E silencer alone was sufficient to block transcription of
39 -kb silencer and the DHS, but not the 0.4-kb silencer alone, failed to maintain CD4 expression upon p
41 r, we found that in Saccharomyces cerevisiae silencers also influence the extent of silenced chromati
43 We previously identified a recombination silencer and heterochromatin targeting element in the Vk
45 kb sequence in intron 1 including the 0.4-kb silencer and the DHS, but not the 0.4-kb silencer alone,
46 e sites, the Sir proteins are recruited to a silencer and then associate with adjacent chromatin.
47 effects were also seen: Effective enhancers, silencers and 3' splice sites tend to be single stranded
48 osophila melanogaster, temperature-sensitive silencers and activators are widely used to control the
49 veloped an experimental strategy to identify silencers and EBs using transient transfection assays.
52 ed cis-regulatory elements likely containing silencers and find that 41.5% of ~7500 tested elements s
53 -regulatory elements - promoters, enhancers, silencers and insulators, subsequently changing their ta
55 matically increased the number of identified silencers and reveals that they are bifunctional regulat
57 study characterizes the molecular profile of silencers and their associated chromatin architectures,
58 al activation has advanced considerably, but silencers and their roles in normal development remain p
59 ons had a higher ratio of splicing enhancers/silencers and were more conserved across mammals than th
60 ments (CREs, i.e., enhancers, promoters, and silencers) and the trans factors (e.g., transcription fa
62 Runx3 bind to the Ifng promoter and the Il4 silencer, and deletion of the silencer decreases the sen
63 suggest that the 5'ss D2, the proximal GGGG silencer, and the ESE act competitively to determine the
65 ng strong but spatially delimited binding to silencers, and weaker and more variable Ume6-dependent b
66 vely target CRF neurons with the optogenetic silencer archaerhodopsin tp009 (CRF-ArchT) to examine th
68 r-capture HiC data, we find that over 50% of silencers are interacting with gene promoters having ver
70 nucleotide polymorphisms (SNPs) in predicted silencers are significantly associated with disease phen
72 he common practice of treating enhancers and silencers as separate classes of regulatory elements and
73 scopy to analyze the dynamic effects of four silencers associated with diverse modifications: DNA met
74 se a model in which LuxR serves as a counter-silencer at H-NS-repressed quorum sensing loci by disrup
75 itial hnRNP A1 binding to an exonic splicing silencer at the 3' end of human immunodeficiency virus t
77 In S. cerevisiae, Sir1 is recruited to the silencers at HML and HMR via its ORC interacting region
78 er mapping in T. delbrueckii revealed single silencers at HML and HMR, bound by Td-Kos3, Td-Sir2, and
79 lent information regulator (Sir) proteins to silencers at the silent mating-type loci and to telomere
83 in detail the interaction between enhancers, silencers, boundary elements and promoters at individual
84 eage choice, whereby inactivation of the DRE silencer by a strong TCR signal leads to CD4 commitment,
86 cers, however, genome-wide identification of silencers by computational or experimental approaches ar
90 t binding of Mi-2beta with Ikaros to the Cd4 silencer caused silencer inactivation, thereby allowing
91 regulators, including potential activators, silencers, chromatin remodelers, and ancillary factors.
93 f exonic and intronic splicing enhancers and silencers, complete intron retention, hypomorphic allele
94 ion and affinity purification to isolate the silencer complex assembled in vitro and identify the con
96 the optimal target was mapped to a splicing silencer containing two pseudoacceptor sites sandwiched
97 o promote silencing and found that the HMR-E silencer contributed to an increased steady-state associ
101 er and the Il4 silencer, and deletion of the silencer decreases the sensitivity of Il4 to repression
102 encers, it is possible that the promotion of silencer degradation by viral transactivators may be a c
105 gradient via a conserved Schnurri/Mad/Medea silencer element (SSE) unlike NEEs at brk, sog, rho, and
106 tic stem and progenitor cell (HSPC)-specific silencer element (the Gata1 methylation-determining regi
107 RSF DNA-binding sequence (neuron restrictive silencer element [NRSE]), in vitro and in vivo, reduced
108 (ASO) that blocks an SMN2 intronic splicing silencer element and efficiently promotes exon 7 inclusi
109 maining independent causal variant disrupt a silencer element and putatively increase ESR1 and RMND1
110 form a G-quadruplex structure that acts as a silencer element for c-MYC transcriptional control.
111 lation of Cx36 requires a neuron-restrictive silencer element in the Cx36 gene promoter, and the down
112 l analyses show that SNP rs2494737 maps to a silencer element located within AKT1, a member of the PI
115 tone 3'-UTR motif and the neuron-restrictive silencer element, as well as striking examples of novel
116 s by a separate RNA and that the replication silencer element, located within RIV, defines the templa
118 ure analyses to demonstrate that the two HMR silencer elements are in close proximity and functionall
121 n, by enabling distal regulatory enhancer or silencer elements to directly interact with proximal pro
122 cruits chromatin-modifying complexes to RE1 'silencer elements', which are associated with hundreds o
131 ic analysis revealed that an exonic splicing silencer (ESS) regulated caspase-9 pre-mRNA processing i
132 verts an exonic-splicing enhancer (ESE) to a silencer (ESS), causing frequent exon7 skipping in SMN2
133 splicing enhancers (ESE) and exonic splicing silencers (ESS) in human inherited disease is still poor
134 silencer (ISS), a bipartite exonic splicing silencer (ESS3a/b), and an exonic splicing enhancer (ESE
135 c splicing enhancers (ESEs), exonic splicing silencers (ESSs), intronic splicing enhancers (ISEs), an
136 uld be designated as enhancers (ESEseqs) and silencers (ESSseqs), with an ESRseq score indicating the
139 eanalyze Johnson et al.'s neuron-restrictive silencer factor (NRSF) ChIP-Seq data without relying on
140 ranscriptional regulator, neuron restrictive silencer factor (NRSF), and its downstream target genes.
141 transcriptional repressor neuron-restrictive silencer factor (NRSF), which negatively regulates Crh g
142 with the function of the neuron-restrictive silencer factor (NRSF/REST), an important transcription
145 cing Transcription Factor/Neuron-Restrictive Silencer Factor (REST/NRSF) is a gene-silencing factor t
146 cing transcription factor/neuron-restrictive silencer factor (REST/NRSF) silences neuronal genes in n
147 1-silencing transcription/neuron-restrictive silencer factor (REST/NRSF)--thought to regulate hundred
149 anscription factor (REST)/neuron-restrictive silencer factor is important in a broad range of disease
151 anscription factor]/NRSF (neuron-restrictive silencer factor) actively represses a large array of cod
152 TC-binding factor), NRSF (neuron-restrictive silencer factor) and STAT1 (signal transducer and activa
153 factor (REST; also called neuron restrictive silencer factor) binds to a core group of approximately
154 cing transcription factor/neuron-restrictive silencer factor) protein, a neuronal gene transcription
155 nscription (also known as neuron-restrictive silencer factor) to position 509 of the KCC2 promoter th
156 ctor (REST; also known as neuron-restrictive silencer factor, NRSF) is a universal feature of normal
161 P rs12038474 is located in a transcriptional silencer for CDC42 and the risk allele increases express
162 re-selection stage is independent of a known silencer for Thpok, and requires the last zinc-finger mo
163 In contrast, H-NS, a global transcriptional silencer, formed two compact clusters per chromosome, dr
166 DNA sequence elements, such as enhancers and silencers, function to control the spatial and temporal
167 statistically significant enhancers and five silencers functional in either liver or astrocyte cells,
171 lation of gene expression by transcriptional silencers has been difficult to study due to limited def
172 een studied extensively, few transcriptional silencers have been identified, and they remain poorly u
174 t al. (2014) determine that the chemogenetic silencer hM4Di-DREADD suppresses presynaptic glutamate r
175 transcription of the HMR locus, a secondary silencer, HMR-I, boosted the level of Sir proteins at HM
176 We compared the abilities of two different silencers, HMR-E and a telomeric repeat, to promote sile
178 ing enhancers and to disrupt exonic splicing silencers, implying positive selection for these splicin
179 ibition involved binding of pStat3 to a gene silencer in a second conserved enhancer region (enhancer
180 function as an enhancer in one tissue but a silencer in another tissue from the same intronic region
181 tively regulated through activity of the Cd4 silencer in CD4(-)CD8(-) double-negative (DN) thymocytes
182 sal, which revealed a continuous role of the silencer in mature CD8 cells while exposing a remarkable
184 rmore, TRIC-induced expression of a neuronal silencer in nutrient-activated cells enhanced stress res
186 otein-coupled receptor hM4D is a presynaptic silencer in the presence of its cognate ligand clozapine
187 biased experimental search for enhancers and silencers in a 153-kb region containing the human apolip
189 fier based on MPRA data to predict candidate silencers in over 100 human and mouse cell or tissue typ
190 While some PRC2-bound elements function as silencers in pluripotent cells, they can transition into
191 noncanonical nucleic acid structures, act as silencers in the promoter regions of human genes; putati
193 in 1 (SIRT1), a histone deacetylase and gene silencer, in the eutopic endometrium from women with end
194 2beta with Ikaros to the Cd4 silencer caused silencer inactivation, thereby allowing for CD4 expressi
196 of all CREs, including promoters, enhancers, silencers, insulators and transcription factor binding s
198 erent regulatory motifs including enhancers, silencers, insulators, barriers, and boundaries act simi
199 ncreased transcriptional repression, and the silencer is also shown to be an in vitro and in vivo tar
201 encing in CD8 cells, thus suggesting the Cd4 silencer is not the (only) determinant of heterochromati
202 oncogenic role of EZH2 as a transcriptional silencer is well established; however, additional functi
203 They ensure that the action of enhancers and silencers is restricted to the domain in which these reg
204 partite motif of the human intronic splicing silencer ISS-N1, which controls survival of motor neuron
205 Antisense treatment to SMN2 intron7-splicing silencer (ISS) improves SMN expression and motor functio
206 that ASOs directed against an intron splice silencer (ISS) in the survival motor neuron 2 (SMN2) gen
207 gh a complex network of an intronic splicing silencer (ISS), a bipartite exonic splicing silencer (ES
208 cing enhancers (ISEs), and intronic splicing silencers (ISSs), which are typically located near the s
209 exon 7 and identified two intronic splicing silencers (ISSs): one in intron 6 and a recently describ
210 1 also stimulate the degradation of cellular silencers, it is possible that the promotion of silencer
212 lso binds to an additional intronic splicing silencer, located at the 3' end of intron 10, to promote
214 ons in a genome-wide fashion on the basis of silencer-mediated transcriptional repression of caspase
215 50 nucleotides downstream of 3'ss A1; a GGGG silencer motif proximal to 5'ss D2; and an SRp75-depende
216 ucleotide that targets the intronic splicing silencer N1 (ISS-N1), located downstream of the 5' splic
218 neither the initiation of DNA replication at silencers nor the passage of a replication fork through
221 sion of negative JAK/STAT regulators such as silencer of cell signaling 1 (SOCS1) or protein-tyrosine
225 cteria, which functions as a transcriptional silencer of foreign DNA by binding to AT-rich elements,
228 tners with a cellular kinase to deactivate a silencer of the lytic switch protein, thereby providing
229 histone deacetylase 2 (PfHda2), is a global silencer of virulence gene expression and controls the f
230 tin remodeler Arid1a, and for Apc, the major silencer of Wnt pathway, chromatin was more accessible a
231 hnRNP H and hnRNP F proteins as being novel silencers of fibroblast growth factor receptor 2 exon II
235 dentified 456 putative splicing enhancers or silencers, of which 221 were predicted to be tissue-spec
236 development via transient action of the Cd4 silencer; once established, the heterochromatin becomes
237 en reported to function as a transcriptional silencer or activator and to execute these activities th
238 ders or in exonic or intronic RNA regulatory silencer or enhancer elements, as well as in genes that
240 plicing factors with regulatory sites termed silencers or enhancers, RNA-RNA base-pairing interaction
241 ons where they may alter splice enhancers or silencers or introduce new splice acceptors or donors.
242 nance of epigenetic information in which DNA silencers or nascent RNA scaffolds act as sensors that w
244 an inducible proximal promoter, an upstream silencer (PAUSE-1), and a distal transactivator region b
245 nd predicted approximately 10,000 additional silencers per cell line and demonstrated that the majori
246 e and potential intersection with epigenetic silencer polycomb repressive complex 2 (PRC2), suggested
248 ed to the telomeric repeat, even though both silencers recruited similar levels of Sir proteins.
249 ochondrial division inhibitor 1 or Drp1 gene silencer reduced mitochondrial fragmentation and increas
250 as2Delta reduces the silencing activities of silencers regardless of their locations and contexts, in
251 We have developed a system that identifies silencer regions in a genome-wide fashion on the basis o
253 eam of the Vkappa genes was increased in the silencer regions upstream of Jkappa1, within the Igkappa
255 exemplifies this process, with enhancer- and silencer-regulated establishment of epigenetic memory fo
257 TRF2 interacts with the master neuronal gene-silencer repressor element 1-silencing transcription fac
258 also found that the neuronal transcriptional silencer REST is necessary for FBMN migration, and we pr
262 These data imply that xDnmt1 has a major silencer role in early Xenopus development before the MB
263 at silencing proteins are first recruited to silencer sequences and then spread from these sites inde
266 in silencing: recruitment of Sir proteins to silencers, Sir protein spreading, and transcriptional re
267 treatment of eyes with KA along with a Sarm1 silencer siRNA attenuated KA-mediated degeneration of RG
268 Modulating PP2A expression or activity, with silencer siRNA or a chemical inhibitor or activator, dur
271 ndings demonstrate the efficacy of Tregs as "silencers," suppressing infection-induced exacerbation o
275 In CD4 cells, Runx1 dissociates from the silencer that has become less accessible, and CD4 transc
276 ycG4) has been shown to be a transcriptional silencer that is amenable to small-molecule targeting fo
277 ors, but p300 recruitment is impaired by the silencer that is associated with the repressor Runx1.
278 ) are involved in the function of a splicing silencer that is created de novo by a total of 83 differ
279 e activation, but Runx1 remains bound to the silencer that retains an open chromatin configuration.
280 ion rely on the function of miRNA, molecular silencers that enact post-transcriptional gene silencing
282 e exonic and intronic splicing enhancers and silencers that regulate exon 13 inclusion via trans-acti
284 on of Sir-based silencing, focusing on Sir1, silencers, the molecular topography of silenced chromati
285 f transcriptional gene silencing, to uncover silencers, their molecular identity and associated chrom
286 ernative splicing through an exonic splicing silencer to control splicing machinery activity in respo
287 nner, and could surprisingly replace the Cd4 silencer to induce irreversible Cd4 silencing in CD8 cel
290 nsitive Cd4 allele harboring a removable Cd4 silencer, we found that a tet-controlled repressor recap
292 on-coding RNA XIST functions as a cis-acting silencer when expressed from nine different locations th
294 und that H-NS functions as a transcriptional silencer while Ler functions as an antisilencer of LPF e
295 modified duplexes can be highly potent gene silencers, with EC50s in the picomolar concentration ran
296 centrated at and immediately adjacent to the silencers, with lower levels of enrichment over the prom
297 BZLF1 promoter, Zp, are potent transcription silencers within the context of an intact EBV genome.
298 erent combinations of splicing enhancers and silencers without assuming a predefined size or limiting
299 show that the tiRNA-associated translational silencer YB-1 contributes to angiogenin-, tiRNA-, and ox