ライフサイエンスコーパス: simple sequence repeat

1 inheriting an abnormally large unstable DNA simple sequence repeat.

2 ome also contains a vast number (>12,000) of simple sequence repeats.

3 train MC58 revealed 65 genes associated with simple sequence repeats.

4 can be attributed to induced instability of simple sequence repeats.

5 real-time PCR amplification of loci carrying simple sequence repeats.

6 of this region and subsequent generation of simple sequence repeats.

7 s revealed the presence of a total of 19,379 simple sequence repeats.

8 se substitutions and insertions/deletions in simple sequence repeats.

9 s chromosome ends by the synthesis of tandem simple-sequence repeats.

10 nternal RNA template to synthesize telomeric simple-sequence repeats.

11 e switches in expression due to hypermutable simple-sequence repeats.

12 coding genes, 8 rRNA, 37 tRNA genes, and 126 simple sequence repeats (122 mononucleotide, 2 dinucleot

13 , gene content, repeat type and number, SSR (Simple Sequence Repeat) abundance, and boundary position

14 he revelation that the variable expansion of simple sequence repeats accounted for anticipation spawn

15 ael over the last 28 y in flowering time and simple sequence repeat allelic turnover.

16 Polymorphic simple-sequence repeat analyses at 15 loci on chromosome

17 s (GDs) among parents were estimated with 44 simple sequence repeat and 2303 single-nucleotide polymo

18 Simple sequence repeat and single-nucleotide polymorphis

19 ns were identified and characterised via 131 simple sequence repeats and 1612 SNPs anchored to the ri

20 On all platforms, simple sequence repeats and genome redundancy tended to

21 arker type (single-nucleotide polymorphisms, simple sequence repeats and insertion/deletions) and loc

22 ve identified tracts of potentially unstable simple sequence repeats and their potential functional s

23 A paucity of long simple-sequence repeats and retroelements is consistent

24 A fingerprinting strategy based on genetic (simple sequence repeat) and geochemical (multielement an

25 putative MITEs, transposon-like elements, 5 simple sequence repeats, and low-copy-number DNAs of unk

26 ents (MITEs), remnants of DNA transposons, 4 simple sequence repeats, and low-copy-number DNAs of unk

27 equence tags, expressed sequence tag-derived simple sequence repeats, and repetitive sequences.

28 There were several super-long simple-sequence-repeat arrays having consecutive thymine

29 Telomerase supplements the tandem array of simple-sequence repeats at chromosome ends to compensate

30 ed hypervariable nuclear markers using inter-simple sequence repeat banding patterns to test these cl

31 protein is dedicated to synthesis of tandem, simple-sequence repeats by virtue of its specialization

32 We used chloroplast simple sequence repeats (cpSSRs) to examine whether ther

33 A simple sequence repeat (D4S391) with high heterozygosity

34 the C. ensifolium transcriptome to identify simple sequence repeats derived from gene regions (genic

35 significantly higher counts of (AG)n dimeric simple sequence repeats (Di-SSRs) in the genomes, coding

36 s used to study evolution of 22 dinucleotide simple sequence repeat (diSSR) sites whose upstream flan

37 To study evolution of dinucleotide simple sequence repeats (diSSRs) we searched recently av

38 Our results suggest that these simple sequence repeat DNA loci will be useful for ident

39 Affected sib pair studies using a simple sequence repeat DNA polymorphism physically linke

40 instances also identify a physically linked simple sequence repeat DNA polymorphism that can be used

41 al localization of >3,000 genetically mapped simple sequence repeat DNA polymorphisms.

42 works in Escherichia coli using hypermutable simple sequence repeats embedded in the spacer region of

43 uberosum ssp. tuberosum, containing mainly a simple sequence repeat encoding histidine and aspartate.

44 rived microsatellite (expressed-sequence tag simple-sequence repeat (EST-SSR)) primers to survey gene

45 payoff for the advantages of having abundant simple-sequence repeats for eukaryotic genome function a

46 , this framework can also be used for direct simple sequence repeats genotyping.

47 rotein-coding genes and a high proportion of simple sequence repeats (>23.93%).

48 SSRs (simple sequence repeats) have been shown to have a varie

49 several interspecific hybrids, we identified simple sequence repeats in 12 Juglans nuclear and organe

50 Here, we study the inheritance of cpDNA simple sequence repeats in 323 offspring derived from gr

51 Variation in simple sequence repeats in key genes can provide a mecha

52 strand DNA synthesis is known to destabilize simple sequence repeats in yeast and Escherichia coli.

53 tations, single-nucleotide substitutions and simple sequence repeat indels, and show that they have d

54 nverted repeats, gene copy number variation, simple sequence repeats, indels, and single nucleotide p

55 Use of simple sequence repeats is advantageous because of the l

56 Localized hypermutation mediated by simple sequence repeats is an important mechanism of suc

57 mediated through variation in the length of simple sequence repeats, is recognized as an important m

58 , hence, the comparative assessment of Inter-simple sequence repeat (ISSR) and Start codon targeted (

59 DNA were obtained from single spores (Inter Simple Sequence Repeat (ISSR) fingerprints).

60 In this study, measures of inter-simple sequence repeat (ISSR) markers and mtDNA D-loop t

61 tential sources of molecular markers such as simple sequence repeats, large repeat sequences, and sin

62 Furthermore, they implicate simple sequence repeats, linked to gene regulation and u

63 Simple sequence repeats located within reading frames me

64 We identified 83 simple sequence repeat loci that are polymorphic between

65 This study utilised 13 polymorphic simple sequence repeat loci to investigate the impact of

66 used molecular data from chloroplast DNA and simple sequence repeats loci of P. machrisii and P. auri

67 stry of salmonid fishes, was detected at one simple sequence repeat locus and suggested by the presen

68 to adapt a genotyping approach based on SSR (Simple Sequence Repeat) marker to a discriminating traci

69 of the 22 BC(5)F(1) were genotyped using 12 simple sequence repeat markers around the Pi-ta genomic

70 e progeny were screened with 115 polymorphic simple sequence repeat markers covering >90% of the mous

71 As simple sequence repeat markers derived from BESs have so

72 screened with forty-three highly polymorphic simple sequence repeat markers in PCR-based assays.

73 -pairs, for the haplotype generated from two simple sequence repeat markers within the LPL gene).

74 a whole-genome scan with highly polymorphic simple sequence repeat markers, a maximum LOD score of 3

75 Using simple sequence repeat markers, we developed a bacterial

76 t, separated by 10-42 species-specific inter-simple sequence repeat markers.

77 de novo sequencing to generate novel genomic simple sequence repeats markers (gSSRs).

78 For maize chromosome 1, mapping 45 simple-sequence repeat markers delineated 10 groups of R

79 ted to develop, characterize and design SSR (simple sequence repeat) markers using online genetic res

80 c variation was also found using ISSR (inter-simple sequence repeat) markers, and population structur

81 a also suggest that highly unstable expanded simple sequence repeats may act as sensitive reporters o

82 d develop PCR primers that permit the use of simple sequence repeats (microsatellites) to detect diff

83 We found 1,742 simple sequence repeat motifs in 1,585 BESs, spanning 27

84 Although the average effect of a simple sequence repeat mutation is very small (approxima

85 ethylation and showed that the presence of a simple sequence repeat of specific size could stabilize

86 Here we characterize natural variation in simple-sequence repeats of 2-10 bp from inbred Drosophil

87 c library was screened for clones containing simple sequence repeat, or microsatellite, loci.

88 population, we measured the copy numbers of simple sequence repeats, or microsatellites, in Mycobact

89 by this method with that measured by inter-(simple sequence repeat) PCR and microsatellite instabili

90 tes of fractional allelic loss and/or inter-(simple sequence repeat) PCR instability; these seven loc

91 genomes through use of the technique inter-(simple sequence repeat) PCR, we have found genomic alter

92 akly associated with that measured by inter-(simple sequence repeat) PCR.

93 identified, with a distribution of one SSR (simple sequence repeat) per 8.36 kbp and 2,000 were suit

94 We have identified a unique simple sequence repeat polymorphic marker (hLMX1.2CA1) i

95 A simple sequence repeat polymorphism (ipf1CA2) was identi

96 This simple sequence repeat polymorphism, and thus the IPF-1

97 We studied the extent to which genotyping of simple sequence repeat polymorphisms (SSRs) in pooled DN

98 dred thirty-six new STSs, including 10 novel simple sequence repeat polymorphisms that are being used

99 containing both gene-specific sequences and simple sequence repeat polymorphisms.

100 thod for high-throughput genetic analysis of simple sequence repeat polymorphisms.

101 strategies using both single-nucleotide and simple-sequence-repeat polymorphisms.

102 reveals numerous genes, genome-wide repeats, simple sequence repeats (potential genetic markers), and

103 riation mediated by changes in the length of simple sequence repeat regions within several genes, mos

104 typed, and while most used primers flanking simple sequence repeats, some genes were included.

105 ed wild species progenitors, with 50 nuclear simple sequence repeat (SSR) (also known as microsatelli

106 istic domestication-related QTL, we analyzed simple sequence repeat (SSR) diversity from 102 markers

107 ccurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight mo

108 Simple sequence repeat (SSR) fingerprinting revealed tha

109 al genetic structure than many forest trees (simple sequence repeat (SSR) FST=0.21), with major genet

110 A set of 47 simple sequence repeat (SSR) loci showed stronger eviden

111 (cotton) genomes, 780 cDNA, genomic DNA and simple sequence repeat (SSR) loci were re-sequenced in G

112 s estimated using a Bayesian analysis of 141 simple sequence repeat (SSR) loci.

113 ion of Chinese soybean landraces assessed by simple sequence repeat (SSR) markers and allelic variati

114 The map includes 14 simple sequence repeat (SSR) markers and four genes in a

115 dy, we developed novel transcriptome-derived simple sequence repeat (SSR) markers from two divergent

116 Microsatellite or simple sequence repeat (SSR) markers have wide applicabi

117 A tiered marker analysis with 151 simple sequence repeat (SSR) markers in 90 individuals o

118 dy, we developed and evaluated a total of 98 simple sequence repeat (SSR) markers including 66 microR

119 e allele-specific PCR (KASP) markers and two simple sequence repeat (SSR) markers spanning 8.2 cM.

120 lar, we analysed 15 previously characterised Simple Sequence Repeat (SSR) markers to estimate genetic

121 l bins 2.02, 2.05-2.06, and 6.05 between the simple sequence repeat (SSR) markers umc1165-bnlg1017, u

122 Simple sequence repeat (SSR) markers were previously dev

123 I 491423] and CPP37 [PI 639033]), developing simple sequence repeat (SSR) markers, and identifying si

124 ereals for their potential use in developing simple sequence repeat (SSR) markers.

125 ating the rapid discovery and development of simple sequence repeat (SSR) markers.

126 Genetic diversity analysis using 30 Simple Sequence Repeat (SSR) polymorphic markers identif

127 We have examined simple sequence repeat (SSR) polymorphisms and two singl

128 Simple sequence repeat (SSR) sequences were mined in the

129 ith 3p deletion syndrome but also captured a simple sequence repeat (SSR) variation associated with M

130 ia virginiana Mill., based on a whole-genome simple sequence repeat (SSR)-based genetic map and on ma

131 Simple sequence repeat (SSR)-based genetic markers are b

132 f the 112 gaps of 5-10 cM in the preexisting simple sequence repeat (SSR)-based map, while 111 genes

133 rations in expression of surface antigens by simple sequence repeat (SSR)-mediated phase variation.

134 Simple sequence repeats (SSR) from BESs were analyzed an

135 Highly variable simple sequence repeats (SSR) markers are one of the mos

136 d to nine quantitative trait loci (QTLs) and simple sequence repeats (SSR) markers linked to three QT

137 switching of the phage receptors mediated by simple sequence repeats (SSR).

138 ied fragment length polymorphisms (AFLP) and simple sequence repeats (SSR)] we have generated genetic

139 nd wild accessions that were genotyped at 25 simple-sequence repeat (SSR) loci.

140 re was estimated on the basis of 36 unlinked simple-sequence repeat (SSR) markers.

141 Microsatellite (simple sequence repeat - SSR) and single nucleotide poly

142 transposable elements and different types of simple sequence repeat (SSRs) (micro- and minisatellites

143 A total of 507 simple sequence repeats (SSRs or "microsatellites") were

144 sualize the geographic distribution of SNPs, simple sequence repeats (SSRs) and isozyme alleles and a

145 The marker systems evaluated were simple sequence repeats (SSRs) and single nucleotide pol

146 hic genetic markers - microsatellite loci or simple sequence repeats (SSRs) and single nucleotide pol

147 ived from repetitive DNA sequences including simple sequence repeats (SSRs) and TEs.

148 Simple sequence repeats (SSRs) are indel mutational hots

149 Simple sequence repeats (SSRs) are insertion-deletion mu

150 Simple Sequence Repeats (SSRs) are used to address a var

151 Accurate and efficient genotyping of simple sequence repeats (SSRs) constitutes the basis of

152 Simple sequence repeats (SSRs) have been successfully us

153 A combination of nuclear and chloroplast simple sequence repeats (SSRs) have been used to investi

154 Simple sequence repeats (SSRs) in DNA sequences are comp

155 Simple sequence repeats (SSRs) in DNA sequences are tand

156 the frequency and distribution of different simple sequence repeats (SSRs) in the genome.

157 Phase variation of hypermutable simple sequence repeats (SSRs) is a widespread and stoch

158 molecular analyses; in fact, by carrying out simple sequence repeats (SSRs) markers analysis, we char

159 Using simple sequence repeats (SSRs) markers, amylose content,

160 mammal-like landscapes of retroelements and simple sequence repeats (SSRs) not found in the chicken.

161 We analyzed diversity at 462 simple sequence repeats (SSRs) or microsatellites spread

162 base pairs, within segments of genome called simple sequence repeats (SSRs) that consist of multiple

163 The simple sequence repeats (SSRs) they bind can also adopt

164 The number of simple sequence repeats (SSRs) was 176 and 159 in D. ser

165 Poly(A/T) tracts are abundant simple sequence repeats (SSRs) within the human genome.

166 , 545 probed by random genomic clones, 16 by simple sequence repeats (SSRs), 14 by isozymes, and 5 by

167 However, in instances such as Simple Sequence Repeats (SSRs), a 'good enough' solution

168 inferences as the highly informative marker simple sequence repeats (SSRs), as long as a sufficient

169 Approximately 8.5% of BESs contain simple sequence repeats (SSRs), most of which are AT/TA

170 Simple sequence repeats (SSRs), sometimes described as g

171 ypermutation, through polymerase slippage of simple sequence repeats (SSRs), to generate phenotypic v

172 nature of selection using microsatellites or simple sequence repeats (SSRs).

173 an (AC)11 probe for the presence of (CA/GT)n simple sequence repeats (SSRs).

174 luding DNA transposons, retrotransposons and simple sequence repeats (SSRs).

175 ributions of transposable elements (TEs) and simple sequence repeats (SSRs).

176 One example is replication slippage of simple sequence repeats (SSRs); this process yields abun

177 s genome assembly 2.0 (JGI) were scanned for Simple Sequence Repeats (SSRs); unique SSRs were then te

178 Simple-sequence repeats (SSRs) have increasingly become

179 We identified 233 microsatellites (simple sequence repeats, SSRs) per Mbp in the enset geno

180 Simple sequence repeat telomeric DNA is maintained by a

181 Furthermore, we identified 179 candidate simple sequence repeats that can be used for genotyping

182 6.7 % of BESs contained simple sequence repeats, the most abundant (47.8 %) bein

183 s shown to be enriched on the 177- and 50-bp simple sequence repeats, the non-transcribed regions aro

184 tely 12% of all GSRs contain an identifiable simple-sequence repeat, the dataset is a powerful resour

185 clude one copia-like LTR retrotransposon, 13 simple sequence repeats, three copies of a novel type II

186 reverse transcriptase responsible for adding simple sequence repeats to chromosome 3'-ends.

187 a eukaryotic reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a

188 Telomerase adds simple sequence repeats to chromosome ends using an inte

189 The telomerase enzyme adds simple sequence repeats to chromosome ends.

190 Telomerase adds telomeric simple sequence repeats to single-stranded primers in vi

191 Telomerase adds simple-sequence repeats to chromosome ends to offset the

192 ect to phase variation due to alterations in simple sequence repeat tracts.

193 s derived from unique sequences flanking the simple sequence repeat units in seven clones showed all

194 Of these, 29 clones contained multiple simple sequence repeat units.

195 s (single nucleotide polymorphisms) and SSR (simple sequence repeat) variation as a means of tracing

196 In addition, 4,285 simple sequence repeats were detected.

197 nding domain; however, different patterns of Simple Sequence Repeats were found within a 540-bp regio

198 More than two million simple sequence repeats were identified, which will faci

199 The 1191 SNPs from Hinp1 I/ Hae III and 23 simple sequence repeats were used to establish a high-de

200 ion of endogenous florendovirus loci with TA simple sequence repeats, which are associated with chrom

201 etailed genome-scale comparative analysis of simple sequence repeats within protein coding regions am