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1 hylation at cap 1 on substrate SL RNA and U1 small nuclear RNA.
2 huttling, we demonstrate the shuttling of U1 small nuclear RNA.
3 tional regulation of the expression of an Sm small nuclear RNA.
4 in but with a 10-fold lower affinity than U1 small nuclear RNA.
5 binding to an RNA hairpin (U1hpII) in the U1 small nuclear RNA.
6 that alter either the protein U1-C or the U1 small nuclear RNA.
7 A' protein complex and hairpin-loop IV of U2 small nuclear RNA.
8 ks generated with P120-4SU+2 contain the U11 small nuclear RNA.
9 oncanonical mechanisms of base pairing to U1 small nuclear RNA.
10 ox C/D and H/ACA small nucleolar RNAs and U4 small nuclear RNA.
11 ting its association with the inhibitory 7SK small nuclear RNA.
12 ng RNAs, which share some of the features of small nuclear RNAs.
13 and an H/ACA guide RNA, modify ribosomal and small nuclear RNAs.
14 somes also generates the spliceosomal U-rich small nuclear RNAs.
15 P structure that contains the U2, U5, and U6 small nuclear RNAs.
16 ike Sm and like-Sm core peptides, which coat small nuclear RNAs.
17 the modification of ribosomal RNA and other small nuclear RNAs.
18 ing frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs.
19 e base-pairing interaction between U4 and U6 small nuclear RNAs.
20 able base pairing between the transcript and small nuclear RNAs.
21 cumulation of pre-tRNAs, pre-rRNAs, and some small nuclear RNAs.
22 rocessing of U6 RNA, one of the spliceosomal small nuclear RNAs.
23 5S and cytoplasmic 7SL as well as U2 and U6 small nuclear RNAs.
24 uclear pre-mRNAs, as well as the majority of small nuclear RNAs.
25 se II transcribes messenger RNAs and several small nuclear RNAs.
26 reading frames (ORFs) plus 13 tRNAs and four small nuclear RNAs.
27 d structural features with cellular Sm-class small nuclear RNAs.
28 S and 28S rRNAs and levels of the U-class of small nuclear RNAs.
29 it complex required for 3'-end processing of small nuclear RNAs.
30 rimethylguanosine (TMG) caps on spliceosomal small nuclear RNAs.
31 vertebrates the export of mRNA, like that of small nuclear RNA, 5S rRNA, and transport factors such a
33 iation of the large inactive P-TEFb:7SK RNP (small nuclear RNA 7SK ribonucleoprotein) complex and the
34 s inhibited by the coordinate actions of 7SK small nuclear RNA (7SK snRNA) and hexamethylene bisaceta
35 rt that LARP7, BCDIN3, and the noncoding 7SK small nuclear RNA (7SK) are vital for the formation and
37 two ncRNAs implicated in RNA processing: U1 small nuclear RNA, a component of the spliceosome, and M
38 for catalysis by unwinding base-paired U4/U6 small nuclear RNAs, a step that must be precisely timed.
39 ticular, both types of promoters utilize the small nuclear RNA activating protein complex (SNAP(c)) a
40 mal sequence element (PSE) recognized by the small nuclear RNA activating protein complex (SNAPc).
41 C-4, the Myb-like DNA-binding subunit of the small nuclear RNA activating protein complex, binds piRN
43 e 57-kDa subunit is orthologous to the human small nuclear RNA-activating protein (SNAP)50, which is
44 scription factors, a partially characterized small nuclear RNA-activating protein complex (SNAP(c)) a
45 sphorylates the general transcription factor small nuclear RNA-activating protein complex (SNAP(C)) t
46 n a unique transcription factor known as the small nuclear RNA-activating protein complex (SNAPc).
47 wo of the three TAFs in the pol III-specific small nuclear RNA-activating protein complex (SNAPc).
49 A, TFIIB, and TFIIH which, together with the small nuclear RNA-activating protein complex, form a tra
50 ll four hypertrophic signals dissociated 7SK small nuclear RNA, an endogenous inhibitor, from cyclin
51 ~160-nt-long RNAs, including spliceosomal U6 small nuclear RNA and a cyclic-di-AMP binding riboswitch
53 'Sm' sequence motif, form a complex with U6 small nuclear RNA and are required for pre-mRNA splicing
54 partmentalization by fluorophore-labeling U1 small nuclear RNA and observing its distribution in the
56 recursor, proper 3'-end processing of the U4 small nuclear RNA and some small nucleolar RNAs, and deg
57 tein particles (snRNPs), which consist of U1 small nuclear RNA and ten proteins, recognize the 5' spl
61 ent within snatched fragments and found that small nuclear RNAs and small nucleolar RNAs contributed
62 results in the misexpression of a variety of small nuclear RNAs and small nucleolar RNAs, an effect t
63 increases the levels of spliceosomal and U7 small-nuclear RNAs and corrects RNA processing defects i
64 oplasmic fraction, whereas Pem pre-mRNAs, U6 small nuclear RNA, and a spliced intron from another gen
65 The large complex is composed of P-TEFb, 7SK small nuclear RNA, and hexamethylene bisacetamide-induci
66 e the potential to pair with sequences in U1 small nuclear RNA, and mutations disrupting this pairing
67 damage to noncoding RNAs such as rRNA, tRNA, small nuclear RNA, and small nucleolar RNA is likely to
68 nd metabolism, including processing of rRNA, small nuclear RNA, and small nucleolar RNA, and mRNA dec
69 nucleolar RNA, natural antisense transcript, small nuclear RNA, and small RNA using published dataset
70 an intricate network formed by U5, U2 and U6 small nuclear RNAs, and a pre-messenger-RNA substrate.
71 small RNAs, including the Epstein-Barr virus small nuclear RNAs, and newly synthesized progeny DNA.
72 ely block nuclear transport of spliced mRNA, small nuclear RNAs, and small nuclear ribonucleoproteins
73 clear organelles that are highly enriched in small nuclear RNAs, and that have long been thought to b
78 omplexes between the large subunit of the U2 small nuclear RNA auxiliary factor (U2AF65) with the spl
79 pression of IRAK4-L is mediated by mutant U2 small nuclear RNA auxiliary factor 1 (U2AF1) and is asso
81 thylguanosine (TMG) cap found in many U-like small nuclear RNAs, but a subpopulation of nut-1 RNAs ca
82 esvirus saimiri (HVS) encodes seven Sm-class small nuclear RNAs, called HSURs (for Herpesvirus saimir
83 particular spliceosome components, including small nuclear RNAs, cause reproducible uniquely distribu
84 of three fluorescently tagged molecules: U7 small nuclear RNA, coilin, and TATA-binding protein (TBP
85 exon and a 'U1 domain' that binds to the U1 small nuclear RNA component of the U1 small nuclear ribo
86 ription factor SNAP(C), which binds to human small nuclear RNA core promoter elements and nucleates p
88 nts of the mRNA splicing machinery, comprise small nuclear RNAs, each complexed with a set of protein
89 n strain to screen a collection of mutant U2 small nuclear RNAs, each containing a point mutation nea
91 structure of a homologous stem-loop from U2 small nuclear RNA fits closely to the electron density o
92 least two multisubunit protein complexes, a small nuclear RNA-free structure similar to what was rep
93 is is, however, required for displacement of small nuclear RNAs from the Gemin5-containing subunits a
94 uide chemical modifications of ribosomal and small nuclear RNAs, functions that are carried out in th
95 reviously isolated a variant of the human U6 small nuclear RNA gene (87U6) and demonstrated that tran
96 mologous to SNAP50, a component of the human small nuclear RNA gene activation protein complex (SNAPc
97 t is transcribed from the optimized mouse U7 small nuclear RNA gene and contains the 5' stem-loop (p7
99 sses TAR-2 under the control of the human U6 small nuclear RNA gene promoter and here show that the U
108 lex SNAP(c) is required for transcription of small nuclear RNA genes and binds to a proximal sequence
109 on mechanism differs from that of vertebrate small nuclear RNA genes and the SL RNA homologue in Asca
110 IIIB)-alpha governs basal transcription from small nuclear RNA genes by RNA polymerase III (pol III).
112 scription from yeast small nucleolar RNA and small nuclear RNA genes into adjacent genes is prevented
113 and deletion analyses of mammalian class III small nuclear RNA genes transcribed by RNA polymerase (p
116 cript; the RNA polymerase III-transcribed U1 small nuclear RNA has the same first four nucleotides as
117 etween group II introns and the spliceosomal small nuclear RNAs, however, have left this proposal in
118 te snoRNA, small Cajal body RNA (scaRNA) and small nuclear RNA in human and mouse cells by convention
121 nscribed nucleotide of spliced leader and U1 small nuclear RNAs in the kinetoplastid protozoan Trypan
124 show that a base-paired complex of U6 and U2 small nuclear RNAs, in the absence of the approximately
125 how that the Gemin5-containing subunits bind small nuclear RNA independently of the SMN complex and w
126 sequesters the 5'ss residues involved in U1 small nuclear RNA interactions, thereby inhibiting excis
128 ibonucleoprotein (U1-snRNP) that includes U1-small nuclear RNA is a highly conserved intranuclear mol
130 e branch site recognition region of yeast U2 small nuclear RNA is absolutely conserved in all eukaryo
132 plex often signals nuclear import for U-rich small nuclear RNAs, it is unclear how this Sm binding si
133 inding protein La recognizes UUU-3'OH on its small nuclear RNA ligands and stabilizes them against 3'
134 teins in the cytoplasm; these RNAs resembled small nuclear RNAs like U1 and U5 RNAs in their bi-direc
136 deletion strain, but can be suppressed by U2 small nuclear RNA mutations that hyperstabilize U2 stem
138 Cus2p and stem IIa-destabilized forms of U2 small nuclear RNA places high demands on the ATP-driven
139 l of motor neuron (SMN) complex delivers pre-small nuclear RNAs (pre-snRNAs) to the heptameric Sm rin
143 The Brr2 RNA helicase disrupts the U4/U6 di-small nuclear RNA-protein complex (di-snRNP) during spli
144 t contains two Sm motifs found in the common small nuclear RNA proteins and the LSm (like-Sm) family
146 neuronal identity requires upregulation of a small nuclear RNA, RN7SK, which induces accessibilities
149 erestingly, these three nucleolus-associated small nuclear RNAs (signal recognition particle RNA, tel
150 tes' most abundant non-coding (spliceosomal) small nuclear RNA, silences proximal PASs and its inhibi
151 regions and the small RNAs, including tRNA, small nuclear RNA, small nucleolar RNA, and microRNA.
152 ed abundant small, noncoding RNAs, including small nuclear RNAs, small nucleolar RNAs (snoRNAs), cryp
155 snRNP) by the coordinated actions of the 7SK small nuclear RNA (snRNA) and hexamethylene bisacetamide
156 uborganelles that nonrandomly associate with small nuclear RNA (snRNA) and histone gene loci in human
157 RNA) splicing requires multiple spliceosomal small nuclear RNA (snRNA) and pre-mRNA rearrangements.
161 d clones spanning the Pol III-transcribed U2 small nuclear RNA (snRNA) and U3 snRNA/7SL RNA gene loci
163 ed in unwinding the 5' splice site (5'ss)-U1 small nuclear RNA (snRNA) base-pairing, to allow replace
164 es along with the Pol IV subunit NRPD1b; the small nuclear RNA (snRNA) binding protein SmD3; and two
165 fficiency, the ribozyme was inserted into U1 small nuclear RNA (snRNA) by engineering the U1 snRNA ex
166 with U1 and U2 gene loci, which produce the small nuclear RNA (snRNA) component of the respective sn
171 The distal control region of a human U6 small nuclear RNA (snRNA) gene promoter contains two sep
174 es of metaphase chromosome fragility: the U1 small nuclear RNA (snRNA) genes (the RNU1 locus), the U2
175 osomal fragile sites corresponding to the U1 small nuclear RNA (snRNA) genes (the RNU1 locus), the U2
177 RNA polymerase III transcription of human U6 small nuclear RNA (snRNA) genes both negatively and posi
180 The RNA polymerase (pol) II and III human small nuclear RNA (snRNA) genes have very similar promot
181 ty of eukaryotic organisms, transcription of small nuclear RNA (snRNA) genes is dependent upon a prox
182 re highly enriched at RNA Pol II-transcribed small nuclear RNA (snRNA) genes, and the loss of LEC res
183 case of the human RNA polymerase II and III small nuclear RNA (snRNA) genes, whose core promoters co
188 2'-O-methylation and pseudouridylation of U6 small nuclear RNA (snRNA) hypothesize that these posttra
189 We probe the structure of low-abundance U12 small nuclear RNA (snRNA) in Arabidopsis thaliana and pr
193 SK, an abundant and evolutionarily conserved small nuclear RNA (snRNA) of unknown function, as a spec
194 oduct levels is achieved by using a human U6 small nuclear RNA (snRNA) promoter to drive nuclear expr
196 new strategy: expressing a 5' end-mutated U1 small nuclear RNA (snRNA) to inhibit maturation of cypin
198 for the endonucleolytic cleavage of primary small nuclear RNA (snRNA) transcripts within the nucleus
199 Previously, we showed that spliceosomal U6 small nuclear RNA (snRNA) transiently passes through the
200 se to the catalytic Mg(2+) site in the U2/U6 small nuclear RNA (snRNA) triplex, and the 5'-phosphate
201 vivo association between coilin and rRNA, U small nuclear RNA (snRNA), and human telomerase RNA, whi
202 cleosides from the 3' end of spliceosomal U6 small nuclear RNA (snRNA), directly catalyzing terminal
203 assembled spliceosomal complex comprising U5 small nuclear RNA (snRNA), extensively base-paired U4/U6
204 all nuclear RNP (snRNP), composed of the 7SK small nuclear RNA (snRNA), MePCE, and Larp7, regulates t
205 RNAP II-transcribed cellular RNAs, including small nuclear RNA (snRNA), small nucleolar RNA (snoRNA),
206 pecifically interacts with stem-loop I of U2 small nuclear RNA (snRNA), that C protein disrupts U4:U6
207 , U-rich sequence called the Sm site in each small nuclear RNA (snRNA), to form the core domain of th
208 the survival motor neuron (SMN) protein, U2 small nuclear RNA (snRNA), U5 snRNA, and the small CB-sp
209 ryotic ribosomal RNA (rRNA) and spliceosomal small nuclear RNA (snRNA), uridines at specific sites ar
210 ng requires 5' splice site recognition by U1 small nuclear RNA (snRNA), which is replaced by U5 and U
212 proximal sequence element that recruits the small nuclear RNA (snRNA)-activating protein complex (SN
214 ) protein is essential for the biogenesis of small nuclear RNA (snRNA)-ribonucleoproteins (snRNPs), t
215 it is not involved in transcription from the small nuclear RNA (snRNA)-type, TATA-containing, RNA pol
224 3, +4, and +6) that do not base-pair with U1 small-nuclear RNA (snRNA), the molecule responsible for
225 pecially dependent on a functional U2 snRNP (small nuclear RNA [snRNA] plus associated proteins), as
226 no oligonucleotide [MO] and an engineered U7 small nuclear RNA [snRNA]) to correct this splicing defe
227 roRNA [miRNA], small nucleolar RNA [snoRNA], small nuclear RNA [snRNA], small Cajal body-specific RNA
229 the spliceosome, a complex assembly of five small nuclear RNAs (snRNAs) and a large number of protei
230 , conditional production of 3'-extensions of small nuclear RNAs (snRNAs) and biogenesis of novel tran
231 The 5'-cap structure of most spliceosomal small nuclear RNAs (snRNAs) and certain small nucleolar
235 assembles the heptameric Sm protein core on small nuclear RNAs (snRNAs) and plays a critical role in
242 ng genes requiring RNAPII for transcription, small nuclear RNAs (snRNAs) display a further requiremen
243 otspot mutations (r.3A>G) of U1 spliceosomal small nuclear RNAs (snRNAs) in about 50% of Sonic hedgeh
244 risingly, we found that TOE1 associated with small nuclear RNAs (snRNAs) incompletely processed splic
245 osynthesis of U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs) involves the nuclear export
247 mRNAs and of precursors to the spliceosomal small nuclear RNAs (snRNAs) is the result of an essentia
249 noRNAs, was identified with the spliceosomal small nuclear RNAs (snRNAs) over 30 years ago, its funct
250 Cross-links identified in the U4 and U6 small nuclear RNAs (snRNAs) suggest U4/U6 stem I as a Br
251 lass of ubiquitously expressed, uridine-rich small nuclear RNAs (snRNAs) transcribed by RNA polymeras
254 es at their termini, features reminiscent of small nuclear RNAs (snRNAs) which are abundant and stabl
255 dvantage of our previous observation that U1 small nuclear RNAs (snRNAs) which bind upstream or downs
256 natching of numerous host RNAs, particularly small nuclear RNAs (snRNAs), and avoidance of host trans
258 the cytoplasm, precursors to specific tRNAs, small nuclear RNAs (snRNAs), and small nucleolar RNAs (s
259 ell-established role in 3' end processing of small nuclear RNAs (snRNAs), attenuates MtnA transcripti
260 mitations, we previously proposed the use of small nuclear RNAs (snRNAs), especially U7snRNA to shutt
261 role in melting the duplex between U4 and U6 small nuclear RNAs (snRNAs), leading to the formation of
262 As (miRNAs), small nucleolar RNAs (snoRNAs), small nuclear RNAs (snRNAs), piwi-associated RNAs (piRNA
265 n tandemly repeated genes encoding U1 and U2 small nuclear RNAs (snRNAs), respectively; the PSU1 locu
266 ssing of a variety of RNAs, including tRNAs, small nuclear RNAs (snRNAs), small nucleolar RNAs (snoRN
267 ection of fluorescently labeled spliceosomal small nuclear RNAs (snRNAs), target the nascent transcri
269 e assembly of heptameric Sm protein rings on small nuclear RNAs (snRNAs), which are essential for snR
270 of pseudouridines (Psis) on the spliceosomal small nuclear RNAs (snRNAs), which may enable growth at
271 es (CBs)-subnuclear compartments enriched in small nuclear RNAs (snRNAs)-and promotes efficient splic
280 hat the 27-nt repeats could be the source of small nuclear RNA specifically regulating eNOS expressio
281 tain essential spliceosome factors including small nuclear RNAs, splicing proteins, and endogenous pr
285 th and without the association of 7SK RNA, a small nuclear RNA that is bound to approximately 50% of
287 O-methyl oligonucleotide complementary to U2 small nuclear RNA to study interactions between the UACU
289 ll known cis-spliceosomal uridylic acid-rich small nuclear RNAs (U snRNAs), suggesting the existence
291 iking similarities to the cis-spliceosomal U small nuclear RNAs U1, U2, U4 and U5; for example, the S
296 f noncoding RNAs, including the uridine-rich small nuclear RNA (UsnRNA) and enhancer RNA (eRNA), and
298 te the suppression of 3' end formation by U1 small nuclear RNA, which is known to bind pre-mRNA at th