ライフサイエンスコーパス: software

1 ystem compared with conventionally available software.

2 e codes and implement the method in academic software.

3 settings are completed automatically by the software.

4 ion and classification models with the GUSAR software.

5 xperimental data generated locally by vendor software.

6 nputs generated by popular scRNAseq analysis software.

7 re, like that of radiotherapeutic 3D ProSoma software.

8 ulfopeptide identification by bioinformatics software.

9 ented by resolution recovery using dedicated software.

10 and entered into a qualitative data analysis software.

11 naked eye and quantified by an auto-analysis software.

12 by increasingly accurate contact prediction software.

13 DA data can be processed by well-established software.

14 s to implement it in designing visualization software.

15 efficient storage resources and specialized software.

16 nonlinear least squares with standard, free software.

17 ance on digital data processing and computer software.

18 ng Axisymmetric Drop Shape Analysis computer software.

19 yngo Plaza in comparison with the 3D ProSoma software.

20 es faster than comparable CPU-only alignment software.

21 lature after projection removal using custom software.

22 ough to be performed using basic spreadsheet software.

23 tendibility of the tool compared to existing software.

24 XM 2.0 (commercial) and IDAC-Dose 2.1 (free) software.

25 (ORCC)" slabs automatically provided by the software.

26 ladder radiotracer uptake using quantitative software.

27 ily quantified by the proposed semiautomated software.

28 tified from CT using semi-automated research software.

29 cted and analyzed using Stata 12 statistical software.

30 h as CARD's Resistance Gene Identifier (RGI) software.

31 flow analysis were performed using dedicated software.

32 images were also evaluated using a dedicated software.

33 framework helps (1) developers to build new software, (2) research scientists to verify the software

34 amplitude-decorrelation angiography (SSADA) software 7.1 to obtain OCT angiography (OCTA) images fro

35 With the use of custom software, a capillary density map was obtained by comput

36 t years due to a combination of hardware and software advances, leading to the so-called Resolution R

37 aw, performance gains will need to come from software, algorithms, and hardware.

38 The availability and portability of the software allow researchers to run the GenBank checks pri

39 f these lipofuscin particles using Imaris(C) software allowed robust quantification, while the 3D pro

40 The programming software allows for a simple interface to create fractio

41 Indeed, within the r software alone, we listed 58 packages created to deal wi

42 euristic algorithms for object tracking, the software also allows tracking of body, ears, nose, and f

43 es that were programmed to be ignored by the software and 1 were due to a colony count near the limit

44 enerated using ACD Laboratories/LC Simulator software and corroborated with experimental data match (

45 Both software and data are made available without restriction

46 roved by the use of containers for packaging software and data dependencies.

47 We use this software and its community as a case study to show how m

48 separate packages, often requiring different software and language proficiencies.

49 virtual machine containing all the required software and learning materials for the course.

50 ndom regression model using MTG2 and BLUPF90 software and quantitative measures indicate superior per

51 The NIMBus software and results are available as an online resource

52 p of radiologists and between the commercial software and the majority report.

53 l strain were measured using tissue tracking software and their ability to predict DMDAC onset was as

54 t different instrumentation, data processing software, and database.

55 al FAF images using Heidelberg region finder software, and growth rates were calculated.

56 e relatively easy to implement with existing software, and may provide new insights applicable to the

57 dsets; rely on complicated model-preparation software; and/or require the user to install separate pr

58 Papers describing software are an important part of computational fields o

59 The network and the analysis software are publicly available.

60 d by the Geometry-preserving Adaptive MeshER software are suitable for use with numerical methods.

61 EPA's AR signaling pathway with proprietary software, Assay Central.

62 rived from standards and literature, and the software automates a process for users to add additional

63 g a high-fidelity vehicle dynamic simulation software (Autonomie).

64 by developing the appropriate algorithm and software base.

65 t this hypothesis, we developed an automated software-based method to perform unbiased analyses of op

66 s have started addressing this by developing software, but further improvements are still required in

67 While software by the manufacturer is available in addition to

68 A 360 degrees hip ROM analysis software calculated impingement-free hip movement based

69 The software can also be used to view and explore the result

70 developed to study the human microbiome, our software can be employed in various research application

71 The software can be used to compare prespecified schedules o

72 The software can handle a wide range of problems that intere

73 The software can process multiple image series simultaneousl

74 To test this, we developed software, Cluster-Based analysis of CpG methylation (Clu

75 mant provides comprehensive assessment data, software compares ratings by different informants.

76 (AF-Nests) using the velocity fractionation software, conventional recording, and anatomic localizat

77 Software created for image enhancement, reporting, or wo

78 a and PD were assessed by using the research software (Cumulus), and volumetric PD (VPD) and absolute

79 n this article, we describe the hardware and software design in detail.

80 1) higher computational efficiency thanks to software design that combines tensor computations and pa

81 vel analysis with rMATS-turbo, purpose-built software designed for large-scale analyses of splicing,

82 stream analyses and give recommendations for software developers and users to reduce the risk of such

83 community as a case study to show how modern software development can be accomplished successfully, i

84 ect area and can be readily adopted by other software development communities.

85 the CARD biocuration team to integrate with software development efforts for resistome analysis and

86 Atlas.ti software version 7.5.12 (Scientific Software Development GmbH, Berlin, Germany) to process i

87 nity-building strategies, diversity efforts, software dissemination, and user support.

88 ents in a new version of the duplex analysis software, Du Novo 2.0.

89 Development of tailor-made software (e.g., smartphone applications) for advanced im

90 Altogether, these components create a software ecosystem for researchers to study translation

91 ontributing our framework to the open-source software ecosystem, we aim to contribute to the current

92 ain expertise but without formal training in software engineering or computer science.

93 We draw on conceptions in software engineering, socio-technical systems engineerin

94 Altogether our new software enhance the efficiency of the CoGAPS Bayesian m

95 of the individual researcher within a single software environment.

96 no automated open source PFAS data analysis software exists to mine these extensive data sets.

97 Two groups of software factors emerge as essential enablers of effecti

98 s a macro for the open-source image analysis software Fiji/ImageJ.

99 nt-of-care test (POCT), combined with Virena software for automatic deidentified tracking of influenz

100 Therefore, developing efficient compression software for clinical NGS data goes beyond the computati

101 ranslated, transcribed, entered into Dedoose software for coding, and analyzed utilizing an ethnograp

102 and skills and only needing freely available software for data analysis.

103 syngo.CT-Liver-Analysis software for gross tumour volume determination has great

104 atibility with microfluidics and open-source software for image acquisition and processing.

105 The Rosetta software for macromolecular modeling, docking and design

106 ines cost-effective hardware and open-source software for seed germination experiments, automated see

107 tion spectra were processed via a commercial software for sequence identification.

108 Here I present efficient software for simulating reconstructed phylogenies under

109 um precipitation reaction and development of software for the acquisition and processing of data usin

110 , we describe easily deployable hardware and software for the long-term analysis of a user's excreta

111 We developed a new software framework for parallel matrix factorization in

112 e been implemented in the open-source Python software FRAPOSA, available at github.com/daviddaiweizha

113 ere quantified using automated deep learning software from noncontrast cardiac computed tomography.

114 se of our recently rewritten mesh processing software, GAMer 2, to bridge the gap between poorly cond

115 using participatory working time scheduling software had little effect on both objectively measured

116 Software, hardware, and radiologic and networking infras

117 No integrated software has been made available for data analysis and v

118 the procedure is clearly described, and open software has been made available to facilitate replicati

119 uidance, and advanced imaging technology and software have contributed to improvements in the surgica

120 We also present a method and software (HeIST) for making statistical inferences about

121 neticists, we wrote an R package of computer software, HiGwas, designed to analyze longitudinal GWAS

122 A free and open-source software implementation of the methodology, the scPCA R

123 cribe a framework for validating and sharing software implementations, and we illustrate its usage wi

124 We present software implementing this new approach (R package "NobB

125 Our software implements a probabilistic, fully Bayesian mode

126 validate the recently introduced MicroTools software in a large multicentral database of perioperati

127 rforms other freely available image analysis software in accuracy and speed of cell detection.

128 rray's 60 electrodes using the Cirrus HD-OCT software in both the nasotemporal and superoinferior pla

129 v density was calculated using custom Matlab software in inner and outer annuli around the optic nerv

130 e the development of specialized methods and software infrastructure to successfully derive biologica

131 Finally, use the self-developed RGB analysis software installed on the cell-phone to obtain the SBA c

132 This software instrument addresses the reproducibility concer

133 stem contains all the necessary hardware and software interfaces for end-to-end functionality.

134 The software introduces an MS2 false discovery rate approach

135 Our software introduces new visualization technology that en

136 On large trees, my software is 1000-10 000 times faster than existing tools

137 syngo.CT-Liver-Analysis software is a reliable tool for GTV calculation, with a

138 The software is available at github.com/shilab/parEBEN.

139 Our software is designed for easy integration into existing

140 Recently, the GuideScan software is developed to design CRISPR guide RNA librari

141 The software is implemented as an R package and is supported

142 The presented software is incorporated into the R package 'castor', wh

143 The software is installable via the conda resource managemen

144 The multi-platform software is licensed by the LGPL v.3 open source license

145 The software is presented via a web application that provide

146 The required software is provided on a Github repository.

147 istribution, estimated with MaxEnt modelling software, is mainly centered in subtropical regions, fro

148 The software library currently contains ~7 000 PFAS fragment

149 onization efficiency), and issues related to software (mainly limitations of peak detection algorithm

150 ation of samples, (ii) data recording, (iii) software management with appropriate parameter choices a

151 Automated software measured density (Volpara Density Grade [VDG],

152 Neuroimaging software methods are complex, making it a near certainty

153 Discrete event and agent-oriented software methods are most prominent.

154 is-Hastings Robbins-Monro algorithm in the R software mirt package.

155 Rapid Processing of Perfusion and Diffusion software mismatch determination).

156 cell susceptibility to infection), using our software modules and publicly-available software reposit

157 Importantly, this software monitors via the external desktop computer to t

158 ped a user-friendly and powerful stand-alone software, NAguideR, to enable implementation and evaluat

159 g the polar transformation method in Image J software (National Institutes of Health, Bethesda, MD).

160 inference accuracies as those delivered by a software neural-network.

161 Fovea-to-disc alignment (FoDi) software of the spectral-domain optical coherence tomogr

162 valuable tool for benchmarking of pangenome software or comparing evolutionary hypotheses.

163 or the need to install, update, and maintain software or databases.

164 lve the calibration of sensors, performed in software or via auxiliary compensation circuitry thus co

165 Counts are reported by a publicly available software, OsBp_detect.

166 uripotent stem cells (hiPSCs), and develop a software package (rgenie) to analyse the data.

167 To address this need, we created a software package called ClonoMatch that facilitates rapi

168 We are developing a software package called MoMA (for Molecular Motion Algor

169 vLUME is a virtual reality software package designed to render large three-dimensio

170 roduce a computational modeling platform and software package for combination treatment strategies wi

171 MutEnricher is a flexible software package for investigating somatic mutation enri

172 In previous works, the software package REDCRAFT has been presented as a means

173 ainIAK (brainiak.org), an open-source Python software package that seamlessly integrates several cutt

174 the MinION platform coupled to the NanoOK RT software package to perform shotgun metagenomic sequenci

175 e we present CAFE 5, a completely re-written software package with numerous performance and user-inte

176 Here we introduce a new software package, Brian2GeNN, that connects the two syst

177 R, and implement our new algorithms in a new software package, called VALOR2.

178 ection and axial CT scans are modeled with a software package-DOCTORS, which solves the linear Boltzm

179 reased the flexibility and usability of this software package.

180 y is implemented in the open source ibd-ends software package.

181 bolic tracing studies often involve multiple software packages and lack pathway architecture.

182 Many docking software packages can simulate flexible ligand docking,

183 orbitals may be used for improving ab-initio software packages dedicated to numerical simulations in

184 Here, we first show that metabolomics software packages developed for automated optimization o

185 We disseminate these methods by sharing two software packages that integrate infant-friendly cogniti

186 easily imported and analysed using multiple software packages.

187 ed using the geNorm qbase + 2 and NormFinder software packages.

188 undertaking data processing with a suite of software packages.

189 sing Qiime and Qiita, open-source, validated software packages.

190 roaches in conventional electronic structure software packages: those that treat materials as extende

191 e retrospectively analyzed using a prototype software (PET Assisted Reporting System [PARS]).

192 The software pipeline SHOGUN profiles known taxonomic and ge

193 in the widely used statistical phylogenetic software platform RevBayes, allowing us to jointly estim

194 ng our Regional Healthcare Ecosystem Analyst software platform.

195 electing the most appropriate sequencing and software platforms and annotation pipelines for a new ge

196 validation and limited access to transparent software platforms have also exacerbated the problem.

197 Package for the Social Sciences version 20.0 software program (IBM Corp., Armonk, NY, USA).

198 We describe eMPRess, a software program for phylogenetic tree reconciliation un

199 Currently available software programs are specialized and designed for the a

200 oronavirus disease 2019 pneumonia, visual or software quantification of the extent of CT lung abnorma

201 our software modules and publicly-available software repository.

202 g CIPR against existing functionally similar software revealed that our algorithm is less computation

203 n of WAL visually (%V-WAL), with open-source software (%S-WAL), and with absolute volume (VOL-WAL).

204 tware, (2) research scientists to verify the software's accuracy, and (3) reviewers to evaluate the m

205 As a demonstration of the software's capabilities, we undertook ITC experiments to

206 are model and data files, and how to use the software SBMLsimulator in combination with further tools

207 actical guidance for optimizing platform and software selection when designing an scRNA-seq study.

208 omputational reproducibility means providing software so that for the same input anyone obtains the s

209 ive quantitative frameworks, the field needs software solutions for systematic integration of data in

210 Existing software solutions lack the raw performance and statisti

211 ata analysis was performed using statistical software SPSS version 23.

212 ttaDEER, a scoring method within the Rosetta software suite capable of simulating double electron-ele

213 The software suite combines the results from several tools t

214 Here, we present Easy-HLA, a web-based software suite designed to facilitate analysis and gain

215 escribe the Brain Modeling ToolKit (BMTK), a software suite for building models and performing simula

216 ikeForest is an open-source and reproducible software suite that benchmarks the performance of automa

217 a user-friendly interface to utilize our RAG software suite to predict and design RNA structures and

218 We present an easy-to-use integrated software suite, DIA-NN, that exploits deep neural networ

219 ction localization of fluorescent molecules, software suites for spectroscopic analysis of sSMLM data

220 While several open-source software suites provide subdiffraction localization of f

221 However, software support for the analysis of RNA MS data is inad

222 ians collaborating with life scientists need software that allows them to involve their collaborators

223 for sample preparation and developed custom software that analyzes sequencing data.

224 TBtools is platform-independent software that can be run under all operating systems wit

225 facilitate its application, we created a new software that can convert a regular 3D scatterplot or ne

226 Here we present LipidCreator, a software that fully supports targeted lipidomics assay d

227 paramount that they interface with flexible software that is capable of image segmentation and probi

228 Using software that was developed to detect "blobs" and report

229 chers in molecular ecology for bioinformatic software that will not only condense output from replica

230 Instead, a linchpin to true portability is software that works on mobile devices of internet connec

231 we introduce ClipKIT, an alignment trimming software that, rather than identifying and removing puta

232 echniques are introduced to the demodulation software that, when combined, result in enhanced Cogniti

233 ," from the technology stack of hardware and software through the supporting ecosystem, could catalyz

234 Here, I use plagiarism-detection software to analyze the media coverage of a large random

235 randomly assigned (1:1:1) with mobile phone software to community-based ART initiation with quarterl

236 We used COMSOL software to construct a virtual ACTIS setup with a fluid

237 Imaging data were analyzed using OLINDA/EXM software to determine the dosimetry.

238 aradigm and analysis pipeline as open-source software to facilitate replication studies.

239 rted, derived mean and SD by using automated software to infer them if data were reported in a figure

240 ng underutilized interface within commercial software to integrate free and open-source/external scri

241 , and how to leverage structural elements of software to make it easier to find information within an

242 ent RadAR (Radiomics Analysis with R), a new software to perform comprehensive analysis of radiomic f

243 llenging and often require multiple tools or software to process a single dataset.

244 light microscopy and a specialized analysis software to produce three-dimensional maps for the epith

245 Three reviewers independently used Covidence software to screen titles and abstracts followed by full

246 Application of this software to stent evaluation trials should enable faster

247 popular variant call format (VCF) filtering software to yield file types readily analyzed by CLUMPAK

248 Here, we develop sigLASSO (a software tool at github.com/gersteinlab/siglasso) to car

249 In this paper we introduce a novel software tool called SIRE (standing for "Susceptibility,

250 ve methods in two laboratories, b) develop a software tool for automatic evaluation of quantifiable a

251 Here, we introduce FLEXIQuant-LF, a software tool for large-scale identification of differen

252 Here, we present Adenita, a novel software tool for the modelling of DNA nanostructures in

253 The ncGTW software tool is developed currently as a plug-in to det

254 We introduce a new software tool SONIA to facilitate inference of individua

255 -Cell Proteomics Companion (SCPCompanion), a software tool that enables rapid evaluation of single-ce

256 Here we present CNV Radar, a software tool that utilizes next-generation sequencing r

257 Numerous software tools and analytical methods have been develope

258 ainability and maintainability of scientific software tools developed in academic environments.

259 es to assembly graphs, first general-purpose software tools for finding such alignments have been rel

260 Some software tools have avoided this fate, including the sci

261 Software tools have been developed to automate the estim

262 onstructed their 3D trajectories with custom software tools to measure locomotor performance.

263 ons, we have developed CRISPRitz, a suite of software tools to support the design and analysis of CRI

264 Using widely accessible software tools, the volume of a guest is estimated as it

265 reach, the virtual component of AI, known as software-type algorithms, is the main component used in

266 The new Brian2GeNN software uses a pipeline of code generation to translate

267 We have developed MRLR, a software using 10X linked reads to identify crossover ev

268 nopathy Study (ETDRS) grid, generated by the software using the "RPE" segmentation, were averaged to

269 expressed genes were identified with DESeq2 software, using covariates to correct for sex, age, libr

270 edium; SSF = 6, coarse) by using specialized software; values of these parameters were also obtained

271 using a novel histopathologically validated software (vascuCAP Elucid Bioimaging, Boston, MA) before

272 oach the Geometry-preserving Adaptive MeshER software version 2, a mesh generation code written in C+

273 sing Statistical Package for Social Sciences software version 20.

274 ssion analysis were performed using IBM SPSS software version 23 (IBM Corp, Armonk, NY) and R package

275 sion 23 (IBM Corp, Armonk, NY) and R package software version 3.4.3 (R Foundation for Statistical Com

276 We used Atlas.ti software version 7.5.12 (Scientific Software Development

277 t has been upgraded into a fast and scalable software version, which is able to perform chromosome si

278 ent Resource [RADAR] website) and OLINDA/EXM software (version 2.0; HERMES Medical Solutions).

279 F image using GNU Image Manipulation Program software (version 2.8.22).

280 n doses were calculated using the OLINDA/EXM software, version 2.2.

281 Here, we evaluate the use of variation graph software vg to avoid reference bias for aDNA and compare

282 were estimated with a commercially available software (Volpara).

283 ion measurements using quantitative clinical software was determined by comparing in vivo results for

284 d fractionation system including controlling software was developed for selected nanosized biomacromo

285 tween the majority report and the commercial software was moderate both for the four categories (kapp

286 Customized software was used for analysis of the ORA infrared and p

287 nfrared fluorescence angiography with ICG; a software was used for quantitative analysis.

288 Graphpad Prism software was used for statistical data.

289 Joinpoint software was used to assess changes in incidence and tre

290 CBCT with XperGuide software was used to biopsy 100 nodules, and CCT guidanc

291 he results of a study in which text-analysis software was used to determine the linguistic characteri

292 Semiautomated software was used to quantify noncalcified plaque (NCP),

293 omated image processing and particle counter software were developed to enumerate particles on paper,

294 Finally, we present the MeTaQuaC software which implements the above concepts and methods

295 ompared to current O-glycopeptide processing software, while defining O-glycosite localization confid

296 The proposed pipeline employs WGCNA, a software widely used to perform different aspects of gen

297 g the necessary steps into a single piece of software with a simple set of inputs and outputs.

298 as calculated using a commercially available software with color range function.

299 alculated using tagging and feature-tracking software with different algorithms (non-rigid, elastic i

300 ing a window for integrating data-processing software with larger informatics-based data management p