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1 d-type mice during early embryogenesis (4-36 somites).
2 nd Gli2 to transactivate Myf5 in the epaxial somite.
3  required for Myf5 expression in the epaxial somite.
4 l crest cell migration to the center of each somite.
5  tissues initiate differentiation within the somite.
6 presumptive limb myoblasts emigrate from the somite.
7 on in the anterior compartment of the future somite.
8  to mutually repress each other in the mouse somite.
9 thus full epithelialization of the posterior somite.
10 ut differentiate prematurely adjacent to the somite.
11 g the pharyngeal arches, heart, and anterior somites.
12 c mesoderm, whereas Fgf18 is required in the somites.
13 egments into bilateral tissue blocks, called somites.
14 neck arise from Pax3-expressing cells in the somites.
15 sternal precursors do not originate from the somites.
16 rated embryonic mesodermal structures called somites.
17 a mechanism to specify posterior identity of somites.
18  expression of medium/long Vegfa isoforms in somites.
19 streams, or stall shortly after entering the somites.
20 m migrates in a channel between the skin and somites.
21  derivatives, this enhancer is not active in somites.
22 are held back in order to give rise to later somites.
23 er, these mutants are able to form organized somites.
24  embryo's posterior body, including the tail somites.
25  repulsion at the cell surface in chick half-somites.
26 ors results in complete absence of posterior somites.
27 s associated with an increased cell death in somites.
28 n ceased after the production of about 15-20 somites.
29 nd distal at 4 somites, and distal only at 6 somites.
30 tures" (TLSs) comprising the neural tube and somites.
31  the protein level of phosphorylated p38a in somites.
32  are only able to form roughly half of their somites.
33  vessels, which remodels into the PAAs by 35 somites.
34 ationship of these two regulators in amniote somites.
35 its the expression of cardiac markers in the somites.
36  the muscles for both systems arise from the somites.
37 romotes myotomal extension directly from the somites.
38 al vertebrae, and reduced number of ribs and somites.
39 ardiac progenitors and cardiomyocytes in the somites.
40 ules but to allow expression in the adjacent somites.
41 ogenitors expressing Pax3 are missing in the somites.
42 r, and subsequently in the mid/hindbrain and somites.
43 lves of each vertebra deriving from adjacent somites.
44 gmental de-adhesion and individualization of somites.
45 f the vertebrate embryo's body segments, the somites.
46 o expressed in mesodermal tissues, including somites.
47  mutants exhibited more severe phenotypes in somites.
48 ntial progenitors that normally give rise to somites.
49 er, paraxial mesoderm fails to organize into somites.
50 oevolutionary diversity in limbs, digits and somites.
51  cells oscillate until they incorporate into somites.
52 1(+/+) and Tbx1(-/-) embryos at stages E9.5 (somites 20-25) and E10.5 (somites 30-35).
53 os at stages E9.5 (somites 20-25) and E10.5 (somites 30-35).
54     This allele causes dominant skeletal and somite abnormalities that are distinct from those seen i
55                  The formation of reiterated somites along the vertebrate body axis is controlled by
56 ate and in vasculogenic regions of the avian somite and are able to promote a vascular endothelial fa
57 opy and by immuno-histochemical detection of somite and neural crest marker proteins.
58                             We show that the somite and sclerotome are specified appropriately, the t
59 rsors migrate across the ventral face of the somite and that junctional adhesion molecules (JAMs) med
60 n (Mb) and Cb by Wnt1 occurs between the one-somite and the six- to eight-somite stages and is solely
61 tures are homologous across vertebrates, how somite and vertebral patterning are connected, and the d
62 y putative regulators of early T-independent somites and challenge the T-Sox2 cross-antagonism model
63 al space overlying the dorsal surface of the somites and contact the ectoderm.
64 se genes are required for movement away from somites and later to partition two muscles within the fi
65 from the hypaxial dermomyotome of limb level somites and migrate into the limb bud where they form th
66 d in ectopic trunk expression extending into somites and neuroectoderm.
67 nt with the shared origin of spinal cord and somites and the distinct ontogeny of the anterior and po
68 6, which drives the VEGFA expression in both somites and the DLP, sit at the top of the adult haemang
69 rafish mutants; (b) the delayed formation of somites and the formation of 'salt and pepper' patterns
70 in the spinal cord, hypothalamus, pituitary, somites and upper jaw, but that Boc might negatively reg
71 tebrates, we tested the relationship between somites and vertebrae in a cartilaginous fish, the skate
72                     The timing of notochord, somite, and neural development was analyzed in the embry
73 ormation, was upregulated in mutant cervical somites, and conditional ablation of ectodermal Tbx3 exp
74  role in segmental patterning, alongside the somites, and contributes to mineralization.
75  the outflow tract: proximal and distal at 4 somites, and distal only at 6 somites.
76 lial growth factor A (VEGFA) ligand from the somites, and finally for gata2 expression in the DA, but
77  dorsal medial dermomyotome of newly forming somites, and immunohistological studies show that Zic2 p
78 egmentation of the vertebrate body axis into somites, and later vertebrae, relies on a genetic oscill
79 uently converted into the spatial pattern of somites, and Mesp2 plays crucial roles in this conversio
80        Here, Notch and Wnt signaling directs somite anterior/posterior (A/P) polarity specification a
81 ver, somite size is reduced and later-formed somites are caudalized, coincident with increased cell d
82    In embryos where chd and spt are mutated, somites are completely absent.
83                                              Somites are embryonic precursors of the axial skeleton a
84                               However, these somites are not subdivided into rostral and caudal halve
85 termination wavefront, controlling where new somites are permitted to form along the anteroposterior
86 lished early in embryogenesis, when pairs of somites are rhythmically produced by the presomitic meso
87                              We propose that somites are self-organizing structures whose size and sh
88                                              Somites are the precursors of vertebrae and associated m
89                                              Somites are thought to form via the intersection of two
90 velopment when the vertebral precursors, the somites, are rhythmically produced from presomitic mesod
91                 Cells of the spinal cord and somites arise from shared, dual-fated precursors, locate
92 on growth cones to traverse one half of each somite as they extend towards their body targets.
93                          Using the limbs and somites as major examples, I then address mechanisms for
94 stream, and that they consequently enter the somites as multiple streams, or stall shortly after ente
95  by expression of Lbx1, are specified in the somite at forelimb level, but endothelial progenitors ar
96 ownstream Wnt and Notch activity crucial for somite border formation.
97 sp quadruple mutant embryos the positions of somite boundaries were clearly determined and morphologi
98                                Along nascent somite boundaries, Cadherin 2 levels decrease, becoming
99 gmentation clock', regulate the formation of somite boundaries.
100         Moreover, we find that the posterior somite boundary cells with high levels of stable Cdh2 ha
101 rospectively tracking oscillations of future somite boundary cells, we find that clock reporter signa
102 and that, in zebrafish, the genes regulating somite boundary formation also regulate the development
103 that a gene network previously implicated in somite boundary formation, involving the transcriptional
104 eptor integrin alpha5 (Itgalpha5) to promote somite boundary formation.
105  (CDH2), marking the interface of the future somite boundary in the anterior PSM.
106 n enhanced green fluorescent protein outside somite boundary, especially in head region.
107 a statistical enrichment of Dvl in notochord-somite boundary-(NSB)-directed protrusions, which is dep
108 on of the acellular fissure that defines the somite boundary.
109 is a step-like drop in stable Cdh2 along the somite boundary.
110 tal and tissue stiffness along the posterior somite boundary.
111                  During this process, paired somites bud from the presomitic mesoderm (PSM), in a pro
112 nd spatially restricted to the center of the somite, but that motor axons are dispensable for segment
113 ead and some neck muscles do not derive from somites, but mainly form from mesoderm in the pharyngeal
114 for proper patterning of the neural tube and somites by regulating notochord formation, and provide e
115 zebrafish STARS (zSTARS) first occurs in the somites by the 16 somite stage [17 hours post fertilizat
116            Significantly, markers of nascent somite cell fate expand throughout the PSM, demonstratin
117 gether, our data demonstrate Pax3-expressing somite cells as a source of OSM and SHM fibres, and high
118 ntary swallowing, arise from Pax3-expressing somite cells.
119  of the presomitic mesoderm anterior border, somite chevron morphology and hypaxial myoblast migratio
120 elopment of the dermomyotome in the anterior somite compartment.
121 extra pharyngeal arch, extra ribs, and extra somites, confirming endogenous roles of miR-196.
122                 Utx-null embryos had reduced somite counts, neural tube closure defects and heart mal
123 which results in ectopic Fgf8 expression and somite defects, was recruited near the RARb RARE by RA,
124 the "inhibitory" class of alpha-subunits) in somite derivatives.
125 is severely affected, precluding analysis of somite derivatives.
126                                    Occipital somite-derived cells migrate into the tongue primordium
127 ineage origin) with their limb and diaphragm somite-derived counterparts, but are remarkably endowed
128     We conclude that the small proportion of somite-derived endothelial cells in the limb is required
129 o initiate myogenesis in branchial arch- and somite-derived muscles are known, but the comparable ups
130  common hallmarks with the prototypic SCs in somite-derived muscles, they distinctively feature robus
131 ta signaling in the development of occipital somite-derived myogenic progenitors during tongue morpho
132                       Here, we report that a somite-derived prohematopoietic cue, AIBP, orchestrates
133 s and oblique EOMs compared with synapses in somite-derived skeletal muscle.
134 muscles constitute a transition zone between somite-derived skeletal muscles of the trunk and limbs,
135 se elimination is occurring in most EOMs and somite-derived skeletal muscles, it appears to be dramat
136  typically studied body and limb muscles are somite-derived.
137 /-) chimeric embryos shows that the anterior somites develop in the absence of T and suggests a cell-
138     Blastopore closure, notochord formation, somite development, neural tube closure, and the formati
139  E7.5, while a second wave of more posterior somites develops in the vicinity of the streak.
140 oRNAs (myomiRs) miR-133 and miR-1/206 during somite differentiation.
141 Rgamma2 serves as an activator, facilitating somite differentiation.
142 ession of a reporter in the tailbud, PSM and somites during somitogenesis.
143  between the 10 somite (otic placode) and 20 somite (early otic vesicle) stages.
144 ilopodia protrude from the basal surfaces of somite epithelial cells.
145 and Zic1 in transactivating the Myf5 epaxial somite (ES) enhancer in concert with the Myf5 promoter.
146                    Intersegmental vessels of somites failed to reach the dorsal longitudinal anastomo
147 genitors can be transfated from notochord to somite fate after gastrulation by ectopic expression of
148 tity: The Hox code is fixed independently of somite fate.
149                                              Somites form along the embryonic axis by sequential segm
150                                              Somites form by an iterative process from unsegmented, p
151             During somitogenesis, epithelial somites form from the pre-somitic mesoderm (PSM) in a pe
152 h a role for ntl in mesoderm formation, some somites form within the tail region of embryos lacking n
153 ck' activity that governs the periodicity of somite formation and (iii) preserve the composition and
154 wavefront determines the spatial position of somite formation and the somitogenesis clock controls pe
155 segmentation was significantly affected, and somite formation ceased after the production of about 15
156 ants for Wdr5 and Hdac1 exhibit asymmetrical somite formation characteristic of RA-deficiency.
157                  In the mouse embryo, timely somite formation from the presomitic mesoderm (PSM) is c
158 be three transcriptional trajectories toward somite formation in the early mouse embryo.
159 ranial neural crest cell-streams relative to somite formation is accelerated in rapidly developing fr
160                                 The tempo of somite formation is controlled by a molecular oscillator
161                                              Somite formation is foundational to creating the vertebr
162            Similarly, nodal-independent tail somite formation requires ntl.
163 ranscription factors Ntla and Tbx16 regulate somite formation upstream of this by controlling supply
164 ggest that the segmentation clock may signal somite formation using a phase gradient with a two-somit
165 ignalling pathways then cooperate to promote somite formation via cMESO1/Mesp2.
166                   Due to the continuation of somite formation, this mechanism leads to the progressiv
167 cs of cells in the tailbud and their role in somite formation, we have analyzed the genetic factors a
168  of miRNAs in mesoderm development including somite formation, we used T (Brachyury)-Cre mouse line t
169        By using our software (ACME) to study somite formation, we were able to segment touching cells
170  PSM that has a periodicity equal to that of somite formation.
171 l pulses restore synchrony, thereby rescuing somite formation.
172 k-and-wavefront mechanism is unnecessary for somite formation.
173  and chemical modulation could induce excess somite formation.
174 osure seemed to be temporally uncoupled with somite formation.
175 mbryos in positional lineage segregation and somite formation.
176  complete anterior-posterior axis during the somite-forming stages.
177 ized by the periodic formation of epithelial somites from the mesenchymal presomitic mesoderm (PSM).
178 ing genes, controls the periodic cleavage of somites from unsegmented presomitic mesoderm during vert
179           In birds and mammals the embryonic somites generate a linear series of impenetrable barrier
180          At limb level, Pax3(+) cells in the somite give rise to skeletal muscles and to a subpopulat
181                                              Somites give rise to myogenic progenitors that form all
182 ipotent Pax3-positive (Pax3(+)) cells in the somites give rise to skeletal muscle and to cells of the
183                       In tetrapods, adjacent somite halves recombine to form a single vertebra throug
184  between cells of the anterior and posterior somite halves, without clear resegmentation.
185                                        These somites have axial identity: The Hox code is fixed indep
186         Blocking all Fgf signalling at 10-20 somites, however, using the pan-Fgf inhibitor SU5402, re
187  extensions found in epithelial cells of the somites in chicken embryos.
188 to be associated with the formation of trunk somites in the wild-type embryo.
189 mental features of the vertebrate body - the somites - in which beta1-integrin activity regulates epi
190              The formation of body segments (somites) in vertebrate embryos is accompanied by molecul
191 formation of an ectopic tail, which contains somites, in embryos devoid of nodal signalling, and this
192              Precursors of the anterior-most somites ingress through the primitive streak before E7 a
193  subsequently within the mesoderm to specify somites instead of posterior vascular endothelium.
194 le progenitor cells migrate from the lateral somites into the developing vertebrate limb, where they
195 whereby migration of myogenic cells from the somites into the limb bud is followed by their extension
196 ial and myogenic cells migrate from adjacent somites into the limb bud.
197 l plate mesoderm (LPM) adjacent to occipital somites is a recently identified embryonic source of cer
198 nt embryos, Myf5 expression in newly forming somites is deficient in both sonic hedgehog(-/-) and in
199             Myf5 activation in newly forming somites is delayed in Zic2 mutant embryos until the time
200                     The segmental pattern of somites is generated by sequential conversion of the tem
201           We show that VEGFA produced in the somites is required to initiate adult haemangioblast pro
202 n patterns during development of the palate, somite, kidney, and testis, suggesting that it may be an
203 ties: the clock period in the posterior PSM, somite length and the length of the PSM.
204 e the ribs have been shown to arise from the somites, little is known about how the two segments are
205 esoderm markers such as Tcf15 and Meox1, and somite markers such as Uncx, but failed to express scler
206 a in zebrafish embryos: (a) the variation in somite measurements across a number of zebrafish mutants
207                                          Non-somite mesoderm treated with Noggin generates many somit
208 ral sources, including the lateral plate and somite mesoderm.
209 and FN pillars are also necessary for proper somite morphogenesis.
210  in the link between the molecular clock and somite morphogenesis.
211 fficiency of myod leads to reduced embryonic somite muscle bulk.
212    Target tissues included the heart, liver, somite muscle, fins, and corpuscles of Stannius.
213 s have a role in Myf5 regulation for epaxial somite myogenesis in the mouse embryo.
214                            As they enter the somites, neural crest cells rearrange into spatially res
215 ariety of developing tissues in mice such as somites, neural tubes, and limb buds.
216  show that RARbeta2 plays a specific role in somite number and size, restriction of the presomitic me
217                                              Somite number remains normal in mutant embryos up until
218 xial and abaxial domains and by increases in somite number, not by changes in the function of primaxi
219 ront model) is generally believed to control somite number, size, and axial identity.
220 he limb, in multipotent Pax3(+) cells in the somite of the mouse embryo.
221 ssion profile of cEbf1 was first detailed in somites of chick embryos (from HH8 to HH28).
222 rmation of the fore-, mid- and hindbrain and somites of E- embryos at 24 hpf.
223 limb fields by mature structures such as the somites or mesonephros.
224 s, jamb2 and jamc2, were not detected in the somites or myotome of wild-type embryos.
225 nopus skeletal muscle development, including somite organization, migration of hypaxial muscle anlage
226 ecify posterior otic identity between the 10 somite (otic placode) and 20 somite (early otic vesicle)
227 se gastrula between Early Streak (ES) and 12-somite pair (-s) stages (~6.75-9.0 days post coitum, dpc
228 ing phenotypes in the segmentation clock and somite patterning of mutant mice suggest that LFNG prote
229   Less is understood about how RAR regulates somite patterning, rostral-caudal boundary setting, spec
230 he specific RAR subtype that is required for somite patterning.
231  formation using a phase gradient with a two-somite periodicity.
232 regions, which direct Eya1 expression to the somites, pharyngeal pouches, the preplacodal ectoderm (t
233  to ligand and its localization in the trunk somites positions it at the right time and place to resp
234 defects in somite segmentation and a loss in somite posterior polarity leading to fusions of vertebra
235 dothelial fate when ectopically expressed in somite precursors.
236 ion, with a periodicity matching the rate of somite production.
237 naling and myogenesis in selected epithelial somite progenitor cells, which rapidly translocate into
238                 Vertebral precursors, called somites, provide one of the best illustrations of embryo
239 ranslated into the periodic morphogenesis of somites remains poorly understood.
240 eochondrogenically committed sclerotome from somite requires sonic hedgehog and Nog.
241  Fgf and Hedgehog function between 10 and 20 somites results in symmetrical otic vesicles with neithe
242 REB family in the mesoderm causes defects in somite segmentation and a loss in somite posterior polar
243 ignaling as a means to orchestrate cells for somite segmentation and anterior/posterior patterning.
244 unction of PAPC in chicken embryos disrupted somite segmentation by altering the CDH2-dependent epith
245                                          The somite segmentation clock is a robust oscillator used to
246 e functions of the two Delta proteins in the somite segmentation clock--an explanation that is based
247 lator called the segmentation clock controls somite segmentation in the vertebrate embryo.
248 on changes in mesoderm development uncovered somite segmentation, a previously unobservable human emb
249 nic mesoderm, while Dicer is dispensable for somite segmentation, it is essential for proper limb bud
250 Knockdown of itgalpha6b resulted in abnormal somite shape, fewer somitic cells, weaker or absent myf5
251   Accordingly, LPM adjacent to the occipital somites should be regarded as posterior cranial mesoderm
252 s but were also present medially through the somites similarly to ectothermal anamniotes.
253                                     However, somite size is reduced and later-formed somites are caud
254 sion, and leads to a persistent reduction in somite size until at least the independent feeding stage
255 ransactivation of Gli-dependent Myf5 epaxial somite-specific (ES) enhancer activity in 3T3 cells, and
256                 Our results demonstrate that somite-specific gene expression is required for the prod
257 STARS) first occurs in the somites by the 16 somite stage [17 hours post fertilization (hpf)].
258        col14a1a expression peaked between 18-somite stage and 24 hours postfertilization (hpf), where
259 is gene, dissections were performed on early somite stage embryos during an eight-hour time window of
260 e endocardial progenitors as early as the 10-somite stage which suggests that Hh signaling is require
261 ls, labeled by lipophilic dye at the 4- to 6-somite stage, to regions of the heart at 20 to 25 somite
262  data, and in situ hybridization analysis of somite-stage embryos, we carried out comparative analyse
263 between the one-somite and the six- to eight-somite stages and is solely dependent on Wnt1 function i
264    In our model, specification occurs during somite stages due to varying Hedgehog protein levels, wh
265 ing such that during late gastrula and early somite stages of embryogenesis, Wnt activity must be sup
266 ryos show that Cubn is required during early somite stages to convey survival signals in the developi
267                         At the most advanced somite stages, when completion of spinal closure is immi
268  left wall of the KV between the six- and 12-somite stages, which is coincident with known left-sided
269 ent and, in particular, in the regulation of somite survival and axial rotation, a crucial developmen
270 id signalling, which is required to maintain somite symmetry by interacting with Fgf8 in the left-rig
271 e Ehmt2/G9a, as a RA coactivator controlling somite symmetry.
272              Vertebrae derive from embryonic somites that are continuously produced posteriorly from
273 ween different tissues derived from the same somites that contribute to the structures of the cervica
274  mesoderm treated with Noggin generates many somites that form simultaneously, without cyclic express
275 estricted to the hypaxial region of anterior somites that generate migratory muscle precursors (MMPs)
276 er dorsal and lateral to neural tube and the somites that is normally formed by PNA-binding proteins
277 al skeletal elements arise from the paraxial somites, the appendicular skeleton and sternum arise fro
278 S that was introduced into a subset of chick somites, the progenitors that give rise to dermis and mu
279                                 Formation of somites, the rudiments of vertebrate body segments, is a
280  motifs of vertebrate bodies and organs, the somites, the skeletons of the paired limbs, and musculos
281 k neural crest along the rostral side of the somites, the ventromedial pathway, the branchial arches,
282 ebrafish development, derive from the caudal somites through an epithelial-mesenchymal transition (EM
283  is non-cell-autonomous, and acts within the somite to bridge the Wnt and Notch signalling pathways.
284 or is required earlier within the developing somite to regulate HSC emergence in a non-cell-autonomou
285 that Notch3 performs a novel role within the somite to regulate the neighboring precursors of hemogen
286 sduction of requisite Notch signals from the somite to the precursors of HSCs, and that these events
287 gratory route of cells from the anteriormost somites to OSM and SHM destinations.
288 recursor cells (MPCs) have migrated from the somites to the limb bud and populated the prospective mu
289 hypaxial muscle precursors from the anterior somites undergo long-range migration, moving away from t
290 e stage, to regions of the heart at 20 to 25 somites, using mouse embryo culture.
291 is expressed prominently in the brain, eyes, somites, ventral blood island and branchial arches.
292                                However, each somite was caudalized in a similar manner to the mouse M
293 f11r) and migrate axially across the ventral somite, where Jam2a and the Notch ligands Dlc and Dld ar
294 nic development, skeletal muscles arise from somites, which derive from the presomitic mesoderm (PSM)
295 engrailed-1 (en1) staining in anterior trunk somites, which is dependent on Hedgehog (Hh) signaling.
296 l distribution corresponding to the injected somites, which suggests that blocking GNAS activity in a
297 Zebrafish ortholog of Nogo-B is expressed in somite while expression of zebrafish NgBR is localized i
298 anterior gradient of stable Cdh2 within each somite, while there is a step-like drop in stable Cdh2 a
299  in Matrigel induces gastruloids to generate somites with the correct rostral-caudal patterning, whic
300 the paraxial mesoderm becomes segmented into somites, within which proliferative muscle progenitors a

 
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