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1 nuclear RNAs (snRNAs) incompletely processed spliceosomal.
2 rminal RNA Recognition Motif (RRM) domain of spliceosomal A protein of the U1 small nuclear ribonucle
3 the Tetrahymena group I intron or the yeast spliceosomal ACT1 intron at the same location is not sub
5 al proteins, revealing a new role of Brr2 in spliceosomal activation in addition to U4/U6 unwinding.
6 for retaining U5 and U6 snRNPs during/after spliceosomal activation through its interaction with snR
7 owever, the truncation significantly impairs spliceosomal activation, leading to a dramatic reduction
11 ies however, reveal that HDACs interact with spliceosomal and ribonucleoprotein complexes, actively c
12 omplex in OIS and demonstrate a link between spliceosomal and ribosomal components, functioning indep
13 modification of RNA substrates to fine-tune spliceosomal and rRNA function, accommodating changing r
14 ctivate essential RNAs, including ribosomal, spliceosomal and telomeric RNAs, cisplatin binding sites
15 on, SMN-C1 treatment increases the levels of spliceosomal and U7 small-nuclear RNAs and corrects RNA
19 These results identify the A complex as the spliceosomal assembly step dedicated to splice site pair
20 zation/calcium signaling controls a critical spliceosomal assembly step to regulate the variant subun
21 gesting a previously unknown role of Prp8 in spliceosomal assembly through its interaction with U1 sn
24 tween the TBP-binding module of SAGA and the spliceosomal ATPase Prp5p mediate a balance between tran
26 ate stage during conversion of pre-catalytic spliceosomal B complexes into activated B(act) complexes
27 e activity involved in the activation of the spliceosomal B-complex, we investigated the structural a
29 ide insights into substrate selection during spliceosomal branching catalysis; additionally, this sys
31 trons, and the property that links them with spliceosomal catalysis, is their ability to undergo spli
32 myeloid malignancy development, and identify spliceosomal changes as a mediator of IDH2-mutant leukae
33 ring binds to the TER1 precursor, stimulates spliceosomal cleavage and promotes the hypermethylation
34 that the widespread and basal N. crassa-type spliceosomal cleavage mechanism is more ancestral than t
35 The discovery of a prevalent, yet distinct, spliceosomal cleavage mechanism throughout diverse funga
37 tly upstream and partly overlapping with the spliceosomal cleavage site is a putative binding site fo
38 ombe telomerase RNA (SpTER1) is generated by spliceosomal cleavage, a reaction that corresponds to th
41 tri-snRNP is a 1.5-megadalton pre-assembled spliceosomal complex comprising U5 small nuclear RNA (sn
42 o produce a 29-A density map of a stable 37S spliceosomal complex from the genetically tractable fiss
44 rabbits received a peptide from the Sm B/B' spliceosomal complex previously shown to be immunogenic
47 cle and the pre-mRNA results in a productive spliceosomal complex, leading to intermediates and produ
50 e the NTR, Prp43_Ntr1GP disassembles earlier spliceosomal complexes (A, B, B(act)), indicating that N
51 ermination of cryo-EM structures for several spliceosomal complexes has provided deep insights into i
52 ctors in nuclear speckles and assembles into spliceosomal complexes in association with low-abundance
54 kewise, inspection of BRR2 structures within spliceosomal complexes revealed that the cassettes occup
61 ght on the dynamic assembly of this critical spliceosomal component and elucidate the molecular inter
62 Pre-mRNA processing factor 3 (PRPF3) is a spliceosomal component essential for pre-mRNA processing
64 F65) with the splicing factor 1 (SF1) or the spliceosomal component SF3b155 are exchanged during a cr
65 ided deep insights into interactions between spliceosomal components and structural changes of the sp
66 , the recognition of the intron substrate by spliceosomal components and the assembly of these compon
70 ing competition for specific binding between spliceosomal components involved in recognition of 5' an
71 actors is consistent with the elimination of spliceosomal components that play a peripheral or modula
73 rolled by splicing regulators, which recruit spliceosomal components to initiate pre-mRNA splicing.
75 n the absence of the approximately 200 other spliceosomal components, performs a two-step reaction wi
76 t GFP-CDKC2 fusion proteins co-localize with spliceosomal components, that the expression of CDKC2 mo
77 or basic metabolites and retains a subset of spliceosomal components, with a transcriptome broadly fo
80 y1p acts together with U6 snRNA to promote a spliceosomal conformation favorable for first-step chemi
82 SCNM1 is also co-immunoprecipitated with the spliceosomal core Smith (Sm) proteins and demonstrates f
84 act modus operandi of Prp43 and of all other spliceosomal DEAH-box RNA helicases is still elusive.
87 -electron microscopy structures of the yeast spliceosomal E complex assembled on introns, providing a
89 e monoclonal antibody SC35, raised against a spliceosomal extract, is frequently used to mark NS.
93 h of BPs affect the crosslinking patterns of spliceosomal factors, which bind more efficiently upstre
96 efore are likely indirect effects of altered spliceosomal function, consistent with prior data showin
99 d pharmacologic evidence that leukemias with spliceosomal gene mutations are preferentially susceptib
100 of the mechanistic and biological effects of spliceosomal gene mutations in MDSs as well as the regul
104 sis identified multiple mutations in another spliceosomal gene, SUGP1, that correlated with significa
109 oding splicing factors (which we refer to as spliceosomal genes) are commonly found in patients with
110 e identified additional somatic mutations in spliceosomal genes, including SF3B1, U2AF1, and SRSF2.
113 standing of the functions of Brr2p and other spliceosomal helicases has been limited by lack of knowl
114 intron-specific splicing function and early spliceosomal interactions and suggests links with cell c
117 lex formed between the branch site (BS) of a spliceosomal intron and its cognate sequence in U2 snRNA
120 ith host genomic loci and contained numerous spliceosomal introns and large duplications, suggesting
121 r the emergence of eukaryotic retroelements, spliceosomal introns and other key components of the spl
122 sons thought to be evolutionary ancestors of spliceosomal introns and retroelements in eukaryotes.
123 that are widely held to be the ancestors of spliceosomal introns and retrotransposons that insert in
124 d to share common ancestry with both nuclear spliceosomal introns and retrotransposons, which collect
125 rons are the putative progenitors of nuclear spliceosomal introns and use the same two-step splicing
126 evolutionary perspective because the nuclear spliceosomal introns are thought to derive from group II
128 ypothesized to be the progenitor not only of spliceosomal introns but also of non-LTR retrotransposon
129 f S. cerevisiae and, more generally, excised spliceosomal introns can have biological functions.
131 To trace the evolutionary trajectory of spliceosomal introns from available genomes under a unif
132 nts of the spliceosome and differ from other spliceosomal introns in having a short distance between
136 ring between U2 snRNA and the branch site of spliceosomal introns is essential for spliceosome assemb
140 een proposed for the origin and evolution of spliceosomal introns, a hallmark of eukaryotic genes.
141 e commonly believed to be the progenitors of spliceosomal introns, but they are notably absent from n
142 ron loss or evolution into protein-dependent spliceosomal introns, consistent with the bacterial grou
143 ncerning the evolution of the two classes of spliceosomal introns, finding support for the class conv
144 evolution, as they are likely progenitors of spliceosomal introns, retroelements, and other machinery
152 hanistically similar to the metazoan nuclear spliceosomal introns; therefore, group II introns have b
155 egenerate mammalian splice sites by the core spliceosomal machinery is regulated by several protein f
158 urther resulted in preferential lethality of spliceosomal mutant AML, providing a strategy for treatm
159 Our data suggest that many rare and private spliceosomal mutations contribute to disease pathogenesi
163 , and Inoue et al. have identified recurrent spliceosomal mutations that induced genome-wide splicing
164 characterization of diverse rare and private spliceosomal mutations to infer their likely disease rel
171 esults also demonstrate an analogy between a spliceosomal protein and ribosomal proteins that insert
172 iate with splicing factor 3B1 (SF3B1), a key spliceosomal protein of the U2 small nuclear ribonucleop
173 human orthologue of Saccharomyces cerevisiae spliceosomal protein Prp2, an RNA-dependent ATPase that
178 isrupted one allele of the gene encoding the spliceosomal protein SmD3, creating a model of haploinsu
179 amers of I-E(k)-containing peptides from the spliceosomal protein U1-70 that specifically stain disti
180 rminal RNA recognition motif (RRM) domain of spliceosomal protein U1A, interacting with its RNA targe
182 provide a mechanistic link between a mutant spliceosomal protein, alterations in the splicing of key
184 Recently, mutations in a gene encoding a spliceosomal protein, SF3B1, were discovered in a distin
185 B1 and found that levels of a poorly studied spliceosomal protein, SUGP1, were reduced in mutant spli
186 tified that mutations in genes encoding core spliceosomal proteins and accessory regulatory splicing
187 xpression by promoting methylation of the Sm spliceosomal proteins and significantly altering the spl
190 Recently, recurrent mutations in numerous spliceosomal proteins have been associated with a number
192 mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadi
194 3 subsets: 1) 60 kd Ro, 52-kd Ro, and La, 2) spliceosomal proteins, and 3) double-stranded DNA (dsDNA
195 cancer and that mutations in genes encoding spliceosomal proteins, as well as mutations affecting th
197 s interaction with snRNAs and possibly other spliceosomal proteins, revealing a new role of Brr2 in s
198 ropose that the reversible ubiquitination of spliceosomal proteins, such as Prp3, guides rearrangemen
199 s screening resulted in the isolation of two spliceosomal proteins, U1-70K and U2AF(35) b that are kn
202 in complex with an activating domain of the spliceosomal Prp8 protein at 2.4 angstrom resolution com
203 he similarity between maturases and the core spliceosomal Prp8 protein further supports this intrigui
206 ion, cytokine activity, protein kinases, RNA spliceosomal ribonucleoproteins, intracellular signaling
208 peting stem IIa and stem IIc helices are key spliceosomal RNA elements that optimize juxtaposition of
211 esidues in several non-coding RNAs: tRNA, U2 spliceosomal RNA, and steroid receptor activator RNA.
212 (Met) were vastly underrepresented, while U6 spliceosomal RNA, which functions in the nucleus, was en
213 e-specific 2'-O-methylation of ribosomal and spliceosomal RNAs and are critical for gene expression.
214 ant noncoding RNAs such as tRNAs, rRNAs, and spliceosomal RNAs are also heavily modified and depend o
215 n Prp24 that suppress mutations in U4 and U6 spliceosomal RNAs cluster primarily in the beta-sheet of
218 otected regions within small nucleolar RNAs, spliceosomal RNAs, microRNAs, tRNAs, long noncoding (lnc
219 a link between levels of snoRNA that target spliceosomal RNAs, spliceosomal function, and heart deve
223 ith ribonucleoprotein Gemin proteins but not spliceosomal Sm proteins needed for snRNP assembly.
225 Sm ring assembles efficiently in vitro on a spliceosomal Sm site but the engineered U7 snRNP is func
227 two kinds of RNA--protein complexes (RNPs), spliceosomal small nuclear (sn), and small CB-specific (
230 , which has a well characterized function in spliceosomal small nuclear ribonucleoprotein assembly.
232 mponents of the CB, such as the SMN complex, spliceosomal small nuclear ribonucleoproteins (RNPs), sm
233 erized function of SMN is as an assembler of spliceosomal small nuclear ribonucleoproteins (snRNPs).
234 s in pre-mRNA splicing, forming the cores of spliceosomal small nuclear ribonucleoproteins (snRNPs).
235 plays an essential role in the biogenesis of spliceosomal small nuclear ribonucleoproteins in all tis
236 NF family of proteins found in the U1 and U2 spliceosomal small nuclear ribonucleoproteins is highly
238 er RNA (pre-mRNA) splicing requires multiple spliceosomal small nuclear RNA (snRNA) and pre-mRNA rear
239 nesis of eukaryotic ribosomal RNA (rRNA) and spliceosomal small nuclear RNA (snRNA), uridines at spec
242 y recurrent hotspot mutations (r.3A>G) of U1 spliceosomal small nuclear RNAs (snRNAs) in about 50% of
243 toplasmic injection of fluorescently labeled spliceosomal small nuclear RNAs (snRNAs), target the nas
244 the presence of pseudouridines (Psis) on the spliceosomal small nuclear RNAs (snRNAs), which may enab
247 s important for the biogenesis of ribosomes, spliceosomal small nuclear RNPs, microRNAs and the telom
248 (U1), vertebrates' most abundant non-coding (spliceosomal) small nuclear RNA, silences proximal PASs
250 interactions with the C-terminal tail of the spliceosomal SmN/B/B' proteins in FAS/CD95 alternative s
251 8, promotes transcription of RNAPII-specific spliceosomal snRNA and small nucleolar RNA (snoRNA) gene
252 the first time that 5FU incorporates into a spliceosomal snRNA at natural pseudouridylation sites in
254 s have now shown that mutations in one minor spliceosomal snRNA, U4atac, are linked to a rare autosom
255 to that typical for eukaryotes, T. vaginalis spliceosomal snRNAs lack a cap and may contain 5' monoph
256 resulted in the coprecipitation of the five spliceosomal snRNAs, core Sm polypeptides, and the U1-sp
259 of Cajal bodies (CBs), major NBs involved in spliceosomal snRNP assembly and their role in genome org
261 SMN protein in orchestrating the assembly of spliceosomal snRNP particles and subsequently regulating
263 Here we present the detailed structure of a spliceosomal snRNP, revealing a hierarchical network of
264 k) physically associates with both dSNUP and spliceosomal snRNPs and localizes to nuclear Cajal bodie
267 on exon 7 splicing, demonstrating that core spliceosomal snRNPs influence SMN2 alternative splicing.
269 unique Sm core that differs from that of the spliceosomal snRNPs, and an essential heat labile proces
270 ins effect nuclear localization of the other spliceosomal snRNPs, the Lsm proteins mediate U6 snRNP l
271 he protein is required for the biogenesis of spliceosomal snRNPs, which are essential components of t
276 ingly, the mechanistic basis for restricting spliceosomal splicing to the first transesterification r
278 vators promote the formation of PPIs between spliceosomal sub-complexes, whereas repressors mostly op
279 ositive regulators include components of the spliceosomal subcomplex U1 small nuclear ribonucleoprote
283 ation within a putative RNA binding protein (spliceosomal timekeeper locus1 [STIPL1]) that induces a
286 n mammals, small multigene families generate spliceosomal U snRNAs that are nearly as abundant as rRN
291 exons by promoting productive docking of the spliceosomal U1 snRNP to a suboptimal 5' splice site.
292 cterized CHHC Zn-finger domain identified in spliceosomal U11-48K proteins, tRNA methyl-transferases
295 ) genes, which encode core components of the spliceosomal U6 small nuclear ribonucleoprotein complex,
296 and adenosine nucleosides from the 3' end of spliceosomal U6 small nuclear RNA (snRNA), directly cata
297 tions for up to ~160-nt-long RNAs, including spliceosomal U6 small nuclear RNA and a cyclic-di-AMP bi
300 een proposed that defects in the assembly of spliceosomal uridine-rich small nuclear ribonucleoprotei