ライフサイエンスコーパス: sponge

1 /Bioconductor package (doi: 10.18129/B9.bioc.SPONGE).

2 sister group to all other animals (including sponges).

3 IT), following the application of a collagen sponge.

4 e simple superposition of the hBMP2/collagen sponge.

5 g the microRNA let-7 by using a circular RNA sponge.

6 calised at the interface between calcite and sponge.

7 bacteria that exist as symbionts in a marine sponge.

8 ing and non-wetting liquids dispersed in the sponge.

9 e superhydrophobic TiO2 NPs coated cellulose sponge.

10 tion of cyanobacterial symbionts by a marine sponge.

11 ent communities, and potentially other glass sponges.

12 discovering similar systems in other marine sponges.

13 ghly specific to a single clade of Haliclona sponges.

14 n be obtained, as well as the potent hydride sponges.

15 of layered circuits compared to single-layer sponges.

16 oblasts) within clinically relevant collagen sponges.

17 at deteriorated were overtaken by excavating sponges.

18 lex multicellular animals have been found in sponges.

19 d this method to a 5 minute collection using sponges.

20 ntial role in microRNA sequestration through sponging.

21 6942) but significantly higher than Weck-Cel sponges (16,173 ng, p = 0.0336).

22 by an up-regulated circRNA (circARID1A) via sponging a down-regulated microRNA (miR-204-3p) in human

23 We present SPONGE, a method for the fast construction of ceRNA netw

24 reorganize and develop into a juvenile-like sponge, a remarkable phenomenon of regeneration.

25 SiMNS is prepared through sponge absorption of a hydrolyzed mixture of siloxanes a

26 ions [5, 6], suggesting a general pattern of sponge abundance during collapse of Phanerozoic marine e

27 Although sponge abundance is increasing on some coral reefs, we l

28 ions there have been subsequent increases in sponge abundance.

29 onal carriers to rhBMP-2/absorbable collagen sponge (ACS) in a vertical guided bone regeneration mode

30 of future rates of coral dissolution due to sponge activity.

31 to evaluate the response of coral-excavating sponges after coral bleaching events.

32 ests collagen I to have evolved as a radical sponge against mechano-oxidative damage and proposes a m

33 n existing growth equation for the Caribbean sponge Aiolochroia crassa yielded age estimates of 5.2-1

34 Akt Substrate-based Tandem Occupancy Peptide Sponge (Akt-STOPS) that we developed for specific inhibi

35 nriched in genes unique to either animals or sponges alone.

36 Choanocytes in the sponge Amphimedon queenslandica exist in a transient met

37 for analysis; 131 eyes had MMC delivered via sponge and 185 eyes via injection.

38 d that ERalpha-suppressed circ-SMG1.72 could sponge and inhibit the expression of the microRNA (miRNA

39 nd sensory attributes of two types of cakes (sponge and layer).

40 old-water coral communities, extensive glass sponge and octocoral gardens, and soft-sediment faunal c

41 nce, including members of five new genera (2 sponges and 3 cnidarians).

42 nships between two ancient animal lineages - sponges and ctenophores - and the remaining animal phyla

43 xpression evolved prior to the divergence of sponges and eumetazoans, and was necessary for the evolu

44 s exploration of genomic changes both within sponges and in early animal evolution.

45 24-isopropylcholestane is not diagnostic for sponges and probably formed in Neoproterozoic sediments

46 lements shared between animals as diverse as sponges and vertebrates.

47 s, corals, hydras, and jellyfish), Porifera (sponges), and single-celled protists, including Capsaspo

48 oods Hole, MA, USA, including from plankton, sponge, and coral.

49 about other prebilaterian groups (placozoan, sponges, and cnidarians), and some basal bilaterians.

50 logeny including all major cnidarian groups, sponges, and placozoans.

51 Fossils of the sponge Angulosuspongia sinensis from calcareous mudstone

52 The glass sponge Aphrocallistes vastus contributes to the formatio

53 ere divided into 2 cohorts: MMC delivered by sponge application or by intra-Tenon injection.

54 nd lend support to the current view that the sponge aquiferous system evolved from an open-type filtr

55 Sponges are benthic filter feeders that play pivotal rol

56 Marine sponges are hosts to large, diverse communities of micro

57 Because sponges are likely to be the first branch of extant mult

58 The sponges are often large and structurally complex and rep

59 These shifts appear counterintuitive as sponges are suspension feeders and many rely on photosym

60 Sponges are suspension feeders that filter vast amounts

61 Biodegradable, clinically-approved collagen sponges are used to deliver low doses of small molecule

62 (dPTFE) membrane, or an absorbable collagen sponge as a barrier.

63 approximate the greatest possible age of the sponges as 8.74 y.

64 ovide strong statistical support for placing sponges as the sister-group to all other metazoans, with

65 Functional analyses reveal both sponge-associated microbial communities are enriched in

66 by chaperoning the nuclear pore assembly and sponging away deleterious (G4C2)-RNA repeats.

67 s of knotted cyclic peptides from the marine sponge Axinella sp.

68 h an electrospun nanofibre nib compared to a sponge based approach as the medium for providing hydros

69 ned by 2D NMR studies as well as crystalline-sponge-based X-ray diffraction analyses.

70 growing layer of conductive polypyrrole on a sponge bioanode of a microbial battery, showing rapid bi

71 Sponge bioerosion is achieved by a combination of chemic

72 However, despite the ecological relevance of sponge bioerosion, the exact chemical conditions in whic

73 Negating these hydrocarbons as sponge biomarkers, our study places the oldest evidence

74 alize with Me31B in nuage granules, P-bodies/sponge bodies, and possibly in germ plasm granules.

75 iferation of MM cells in monolayer and in 3D sponges but did not affect MM cell migration, organizati

76 ake batter with 50% einkorn wholemeal flour, sponge cake batter with 20% Jerusalem artichoke powder,

77 batter with 20% Jerusalem artichoke powder, sponge cake batter with 35% cocoa husk powder) were inve

78 lour and addition of functional ingredients (sponge cake batter with 50% einkorn wholemeal flour, spo

79 Samples of sponge cake batter: with wheat flour (control batter), w

80 nt study evaluated the thermal properties of sponge cake batters with different functional ingredient

81 and relocated flour lipids negatively impact sponge cake quality by disturbing air-liquid interface s

82 n reformulation on the sensory perception of sponge cakes and demonstrates how this approach can be u

83 in the SC100, APP and oligofructose (OLIGO) sponge cakes by olfactometry.

84 Both layer and sponge cakes exhibited an enhancement of the resistant s

85 ful development of new gluten-free (GF) mini sponge cakes fortified with broccoli leaves.

86 d aroma quality of 30% (w/w) sucrose reduced sponge cakes incorporating clean-label replacers were in

87 as a substitute for wheat flour in producing sponge cakes of high quality.

88 The functionality of wheat flour lipids in sponge cakes prepared from flour, sugar, eggs and leaven

89 The sensory quality of the reformulated sponge cakes varied, with those containing apple pomace

90 The overall sensory acceptance of GF mini sponge cakes was affected by increasing BLP content.

91 Moreover, sponge cakes yielded more polyphenols and antioxidant ca

92 ve the sensory perception of reduced sucrose sponge cakes.

93 ize flours for the production of gluten-free sponge cakes.

94 SPONGE can accurately quantify the contribution of multi

95 Somatic cells dissociated from an adult sponge can reorganize and develop into a juvenile-like s

96 We show that synthetic DNA sponges can be designed to reshape the response profiles

97 Our study provides evidence that some sponges can tolerate environments that appear unsuitable

98 Furthermore, sponge cell lines can be used to scale-up production of

99 s, fates and behaviours of the three primary sponge cell types-choanocytes, pluripotent mesenchymal a

100 These sponge cell-type conversions are similar to the temporal

101 gical analysis demonstrated that dissociated sponge cells follow a series of morphological events res

102 r collar, that structurally resembled modern sponge choanocytes and choanoflagellates(1-4).

103 er, these analyses argue against homology of sponge choanocytes and choanoflagellates, and the view t

104 ell differentiation in choanoflagellates and sponge choanocytes and constitute an important step in r

105 xpectedly, we find that the transcriptome of sponge choanocytes is the least similar to the transcrip

106 Reconstruction of sponge choanocytes revealed ultrastructural commonalitie

107 edicts independent origins of spicules among sponge classes and presence of transitional forms with w

108 Molecular clocks indicate sponge classes diverged in the Cryogenian, but the oldes

109 Here we describe a new species of fossil sponge, Conciliospongia anjiensis gen.

110 Using a let-7 sponge construct to sequester let-7 miRNAs, we found tha

111 current development (~10 times higher than a sponge control after 4 h).

112 timized option when delivered via a collagen sponge (CS).

113 The two major extant groups of siliceous sponges, Demospongiae and Hexactinellida, are generally

114 The success of excavating sponges depended on the intensity of coral bleaching and

115 small subset of the oroidin family of marine sponge-derived alkaloids and are, for the most part, dim

116 lines can be used to scale-up production of sponge-derived chemicals for clinical trials and develop

117 The structures of the sponge-derived dibrominated bis-indole alkaloids, namely

118 The spectroscopic data for the synthetic and sponge-derived materials did not match well, whereas the

119 climation may support further transitions to sponge dominated reefs in the future.

120 As a result, we predict sponge-dominated tropical reefs will be rare, or short-l

121 Our results show that lipid sponge droplets permit the facile integration of membran

122 Due to their nanoporous structure, lipid sponge droplets readily exchange materials with the surr

123 He started Pica eating disorder (sand and sponge) due to anemia from 5 years and 10 months of age

124 ve direct scleral application using surgical sponges during trabeculectomy.

125 only known to have evolved within a clade of sponge-dwelling snapping shrimps in the genus Synalpheus

126 The role of this sponge effect along the cement cycle (including producti

127 osomal escape capabilities due to the proton sponge effect enabled by the imidazole moieties in the S

128 degraded in acidic endosomes, where a proton sponge effect occurs instantaneously to release the AuNP

129 somal/lysosomal escape of NPs via the proton sponge effect.

130 Therefore, sponges either evolved spiculogenesis long after their d

131 on graphene-modified poly(dimethylsiloxane) sponge electrodes and an elastic gel membrane is develop

132 itecture found in the spicules of the marine sponge Euplectella aspergillum.

133 Within one month sponges exposed to warming (including combined treatment

134 to evaluate novelty in marine microbial and sponge extracts.

135 assay, we discovered that GAS5 may act as a sponge for miR-126-3p in HCC cells.

136 s, circRNA_100338 functions as an endogenous sponge for miR-141-3p in HCC.

137 is an intracellular modulator and a natural sponge for miR-145, counterbalancing the functions of th

138 Further, multi-layer DNA sponges for decoying multiple regulatory proteins provid

139 heir fossils, demosponge larvae and putative sponge fossils, colonial protists, and nematophytes.

140 provides a new search image for Precambrian sponge fossils, which are critical to resolving the orig

141 Ephydatia muelleri is a freshwater sponge found across the northern hemisphere.

142 modiolus heckerae mussels and poecilosclerid sponges from asphalt-rich, deep-sea oil seeps at Campech

143 also inconsistent across siblings, as larval sponges from the same parent shared only 17% of microbes

144 w records of silicon isotopes in diatoms and sponges from the Southern Ocean that together show incre

145 Alternatively, sponge genotypic variation may reflect variation in func

146 nd determine that Namapoikia likely is not a sponge-grade organism.

147 The MMC sponge group had significantly more tense, vascularized,

148 n = 29) or non-medicated absorbable gelatin sponge (group 3, n = 25), 8-week bicanalicular stenting

149 nge that, like several other early Paleozoic sponges, had weakly biomineralized and hexactine-based s

150 ymbiosis between the renieramycin-containing sponge Haliclona sp. and its herein discovered renieramy

151 enomic and taxonomic analyses show that both sponges harbor a distinct microbial community with high

152 Corals and sponges harbor diverse microbial communities that are in

153 [3, 4]; in particular, almost no Hirnantian sponges have been recorded.

154 Most sponges have biomineralized spicules.

155 As a result, sponges have emerged as a potential candidate taxon to b

156 rse array of nitrogen transformations in the sponge holobiont.

157 two Antarctic sponge microbiomes help these sponge holobionts survive in these inhospitable environm

158 While the contribution of sponge holobionts to the nitrogen cycle has been recogni

159 ce of non-neutral processes increases as the sponge host matures.

160 se of a moderately complex microbiome in the sponge host Mycale hentscheli in which multiple symbiont

161 ransmitted microbes are faithful to a single sponge host species.

162 modified peptides families reported from the sponge host, and both Ca Entotheonella phylotypes contai

163 host genotype, with more genetically similar sponges hosting more similar microbial communities.

164 We previously demonstrated that the marine sponge Hymeniacidon heliophila displayed significant com

165 Archaeocyath sponges, hyolith lophophorates, and helcionelloid mollus

166 reduction of haemoglobin content (54.2%) in sponges implanted into Slco2a1 (-/-), compared to wildty

167 C by injection was similar to application by sponge in lowering IOP in patients with glaucoma and the

168 Sponges in general, and Theonella swinhoei in particular

169 is includes evidence of connectivity between sponges in the Florida Keys and the southeast coast of t

170 Furthermore, the abundance of sponges in the Hirnantian sequence of South China may ha

171 Source populations for sponges in the upstream closure are likely in adjacent w

172 difficile and the core microbiota of the sea sponge Ircinia oros.

173 SPONGE is available as an R/Bioconductor package (doi: 1

174 Since the carrier sponge is degraded over time, dentine replaces the degra

175 The diagnosis of a retained surgical sponge is often delayed due to its infrequent occurrence

176 It can be concluded that when a collagen sponge is placed in palatal donor areas of SCTG harvest

177 dual role in the global carbon cycle like a sponge: its massive production contributes significantly

178 However, the use of the lipid sponge (L(3)) phase for encapsulation of proteins has no

179 etoxifying organs to cope with toxic metals, sponges lack organs but harbour a symbiotic microbiome p

180 orals have declined and the photoautotrophic sponge Lamellodysidea herbacea is now abundant.

181 ded over time, dentine replaces the degraded sponge leading to a complete, effective natural repair.

182 l of microbiomes from two abundant Antarctic sponges, Leucetta antarctica and Myxilla sp.

183 Classification of DME comprised sponge-like diffuse retinal thickening, cystoid macular

184 ion efficiency of aspartic protease in lipid sponge-like nanoparticles was 81% as examined by size-ex

185 a change from gels with oriented channels to sponge-like semi-IPNs with disordered interconnected por

186 in a variety of dendritic, hyperbranched and sponge-like topologies that are phosphorylation-dependen

187 etic materials, including molecular magnetic sponges, luminescent magnets, chiral magnets and photoma

188 xy for metabolism), and decoration behavior (sponge mass and percent cover).

189 sites using FDBA and an absorbable collagen sponge may be a sufficient and economic way to preserve

190 s in the Antarctic marine environment, where sponges may dominate the benthic landscape.

191 d axial filaments, suggests that Precambrian sponges may have had weakly biomineralized spicules or l

192 revealed that while Hfq is required for RNA sponge-mediated downregulation of the sRNA, ProQ can inh

193 of robust and high-performance 3DMs such as sponges, membranes, beads and fibres.

194 ystallization, complementing the crystalline sponge method that relies on diffusion of the target int

195 rial lineages in the compositionally unusual sponge microbiome were not known to synthesize bioactive

196 d geography influence the composition of the sponge microbiome.

197 bit functional similarity in these coral and sponge microbiomes despite the taxonomic differences bet

198 unique metabolic potential of two Antarctic sponge microbiomes help these sponge holobionts survive

199 Relatively little is known about the role of sponge microbiomes in the Antarctic marine environment,

200 Both sponge microbiomes possessed genes necessary to perform

201 The latter indicates that Antarctic sponge microorganisms prefer light-independent pathways

202 lates oxidative stress-induced apoptosis via sponging microRNA-150.

203 a potential oncogene that regulates TOP2A by sponging miR-411-5p in glioma.

204 ted as a competing endogenous RNA (ceRNA) by sponging miR-519e-5p, resulting in the de-repression of

205 wo extant classes further confirms siliceous sponge monophyly and demosponge-hexactinellid spicule ho

206 fferences between the injection (n = 38) and sponge (n = 40) groups in surgical success (P = .357), m

207 tion on how shifts from corals to bioeroding sponges occur, and how environmental factors such as ano

208 al transition (EMT) by acting as a molecular sponge of miR-566.

209 Our work shows synthetic DNA sponges offer a simple yet generalizable route to system

210 Ultralight cellular sponges offer a unique set of properties.

211 Marine sponges often house small-molecule-producing symbionts e

212 s used to determine the volume of individual sponges on the wreck surface, and a time series of YouTu

213 Therefore, we sought to determine whether sponges, one of the most ancient extant metazoan lineage

214 ecent phylogenomic analyses resolving either sponges or ctenophores as the sister group of all other

215 This bacterium was detected in multiple sponge orders, according to similarities in key genes su

216 The acquisition of the symbionts by the host sponge Petrosia ficiformis, which was observed in distin

217 membered macrolides isolated from the marine sponge Phakellia fusca Thiele, which was collected from

218 In addition, the sponge phase contains a dense network of lipid bilayers

219 rganelles based on highly stable nonlamellar sponge phase droplets that spontaneously assemble from a

220 ecular dynamics simulations and a coexisting sponge phase observed by small-angle x-ray scattering.

221 lts, we discuss the large potential of lipid sponge phases as carriers for proteins.

222 ctural analysis of the resulting crystalline sponge phases revealed that host-guest interactions, gue

223 yed a lipid system that forms highly swollen sponge phases to entrap aspartic protease (34 kDa), an e

224 Sponges (Phylum Porifera) are among the oldest Metazoa a

225 The family of silicatein enzymes from marine sponges (phylum Porifera) is unique in nature for cataly

226 with the current debate focusing on whether sponges (phylum Porifera) or comb jellies (phylum Ctenop

227 e option, based on the recovery of eDNA from sponges (phylum Porifera), the planet's most effective w

228 We argue here that sponge populations may actually be constrained, rather t

229 ve supported the classical scenario in which sponges (Porifera) are the sister group to all other ani

230 rs sampled from eight species of wild marine sponges (Porifera).

231 Here, we document marine sponge presenting associated with visual and acoustic po

232 In particular, a 3D RVC-Au sponge provides a large accessible surface area for immo

233 mechanism underlying CaCO(3) dissolution by sponges provides new insight into how environmental cond

234 Among these, excavating sponges raise particular concern since they bore into co

235 We also demonstrated that sponge regeneration is accompanied by cell death at earl

236 rative transcriptomic analysis revealed that sponge regeneration is as equally dynamic as embryogenes

237 We found that sponge regeneration is orchestrated by recruiting pathwa

238 Layers with abundant sponge remains were deposited after other mass extinctio

239 Myr old now represent the oldest diagnostic sponge remains, whereas approximately 558-Myr-old Dickin

240 phylogenomic analyses support the view that sponges represent the sister lineage to the rest of the

241 kely prevents colonization by cnidarians and sponges, resulting in fewer taxa than deeper seeps in th

242 We show here that solvent uptake by these sponges results in new gel-like materials, which we term

243 d branched objects, such as trees, lungs and sponges, results in a high surface area to volume ratio,

244 g sites compared to ambient seawater and the sponge's tissue.

245 We obtained sponge samples from Mediterranean and Antarctic surveys,

246 rimitive capillary-like assemblies in 3D sea sponge scaffolds in vitro.

247 enomes of bacterial isolates acquired from a sponge, sea slug, and coral to examine the functional la

248 ansmission were, however, incomplete: larval sponges shared, on average, 44.8% of microbes with their

249 mprove analytical sensitivity by integrating sponge shunt into LFA to decrease the fluid flow rate.

250 thickness, length and hydrophobicity of the sponge shunt were sequentially optimized, and achieved 1

251 ial of a composite silica monolith nested in sponge (SiMNS) and demonstrate an application in the tra

252 ns in favor of the ctenophores-sister or the sponges-sister hypothesis, we submit that research progr

253 electron microscopy show that the silica and sponge skeletons are mutually nested in SiMNS.

254 These microbiomes are distinct among sponge species and from seawater bacterial communities,

255 transmitted microbes with larvae from other sponge species as they were with their own species.

256 ume, surface area, and approximate age of 16 sponge species on the Tibbetts shipwreck off Cayman Brac

257 sites preserve a total diversity of over 75 sponge species, many with preserved soft tissues, in pro

258 t medium stimulates rapid cell division in 9 sponge species.

259 antation and at different times on different sponge specimens.

260 hich are critical to resolving the origin of sponge spiculogenesis and biomineralization.

261 This paper reports sponge spray-a novel sampling and direct MS analysis app

262 cture of Ircinia campana, a common Caribbean sponge subject to mass mortalities and disease.

263 We have standardized and established a sponge Sycon ciliatum regeneration protocol from dissoci

264 We show that a single sponge symbiotic bacterium, Entotheonella sp., constitut

265 g FDBA; and either dPTFE (Test1) or collagen sponge (Test2).

266 ction in the skeletal elements of the marine sponge Tethya aurantia.

267 Here, we report an early Cambrian sponge that, like several other early Paleozoic sponges,

268 al and experimental work and demonstrate how sponges that lack such sealing elements are able to effi

269 mes has been well-established for corals and sponges, their functional roles are less well-understood

270 The sponges themselves represent the scaffold of a gel that

271 rganisms in arsenic and barium cycles in the sponge Theonella swinhoei, known to accumulate high leve

272 Negligible detrimental effects to sponge tissue were observed after treatments up to five

273 of the animals in each treatment were given sponge to decorate with.

274 n about the spicules' arrangement within the sponge to develop a structural mechanics model for the s

275 unctions as an endogenous microRNA-9 (miR-9) sponge to inhibit miR-9 activity, which results in a dow

276 We applied SPONGE to paired miRNA and gene expression data from The

277 Such cells may be used by sponges to contract a conductive pathway to remove chips

278 mixture, where boron functions as an "oxygen sponge" to remove oxygen from an oxide precursor and whe

279 s decoy protein-binding DNA sites, named DNA sponge, to modulate target gene expression in Escherichi

280 68 ng/ml) compared with collections with two sponge types (Weck-Cel: 267.2 ng/ml, p < 0.0001; and Mer

281 Only adult males presented marine sponges, typically doing so in the presence of sexually

282 SPONGE uses 'multiple sensitivity correlation', a newly

283 can suppress immune cell function in marine sponges using secreted ankyrin proteins.

284 , whereas its functional inhibition using a 'sponge' vector or morpholinos promotes premature neural

285 Additionally, sponge volume is more important for explaining social tr

286 change in IOP from baseline was lower in the sponge vs the injection group 24 months after surgery (P

287 Its role as a miR-145 sponge was confirmed by determining reciprocal interacti

288 t the external carotid artery and a collagen sponge was positioned over the harvested area to compare

289 surgically proven cases of retained surgical sponges was undertaken.

290 lular 'rosette' colonies and collar cells in sponges, we reconstructed entire cells in 3D through tra

291 ata from 121 species, ranging from humans to sponges, we test whether such trade-offs universally sha

292 utative function of circRNA is through miRNA sponging, we found that miR-671-5p more potently silence

293 ions (986 ng) was lower than secretions from sponges (Weck-Cel: 8588 ng, p < 0.0001; Merocel: 2509 ng

294 This is particularly true for sponges, which are morphologically diverse and lack indi

295 se increase the particulate food sources for sponges, while they themselves are relatively unaffected

296 tients were randomized to receive a collagen sponge with or without sutures in the palatal donor site

297 In 'leucon' sponges with relatively high-pressure resistance due to

298 twork structure with a similar agglomeration sponge, with more homogeneous pores compared to the hydr

299 al products isolated from the New Guinea sea sponge Xestospongia exigua.

300 chloroalkane metabolism in the giant barrel sponge, Xestospongia muta.