ライフサイエンスコーパス: stem-loop

1 ucture of the phylogenetically conserved ISS stem loop.

2 e more frequent in the absence of a relevant stem-loop.

3 RNA can be replaced by this U6atac distal 3' stem-loop.

4 ally distinctive, lacking the essential P6.1 stem-loop.

5 pecific requirements for the frameshift site stem-loop.

6 thylene blue-labeled structure-switching DNA stem-loop.

7 the HIV-1 trans-activation response element stem-loop.

8 otection of the nucleotides that form the 5' stem-loop.

9 h disrupts a Watson-Crick base pair in the T-stem-loop.

10 re not polyadenylated but end in a conserved stem-loop.

11 and carrier sequences stabilized by a miR-30 stem-loop.

12 llustrates the recognition of unbranched RNA stem loops.

13 transcripts containing 5' MS2 and 3' PP7 RNA stem loops.

14 ve structures comprising either four or five stem-loops.

15 30% preferred structured motifs folding into stem-loops.

16 acting RNA element characterized by multiple stem-loops.

17 e of APOBEC3A, a cytidine deaminase, for DNA stem-loops.

18 esults demonstrate that binding sites within stem-loop 1 of the 5' untranslated region play important

19 g; of the sites tested, those located within stem-loop 1 of the 5' UTR had the most significant effec

20 A, we found that extending the tetraloop and stem loop 2 of the sgRNA with MS2 or PP7 aptamers enhanc

21 y RNA target of FUS via its interaction with stem-loop 3 and provide atomic details of this RNA-media

22 Our results revealed that tandem stem-loops 3' to the cleavage site define optimal, corre

23 RM binds the 3' end of 7SK RNA at the top of stem-loop 4 (SL4) and interacts with both unpaired and b

24 vivo, due to their preventing formation of a stem-loop 5' of the take-off codon and allowing greater

25 Here we investigate the function of the mRNA stem-loop 5' of the take-off codon, as well as the impor

26 In particular, stem-loop A (SLA) and stem-loop B (SLB) located in the 5

27 Stem-loop A (SLA), a part of the viral 5' untranslated r

28 Stem-loop A (SLA), located in the 5' untranslated region

29 VAI consists of an apical stem-loop, a highly structured central domain, and a ter

30 In Db-PCR, 5'- and 3'-stem-loop adapters are specifically hybridized and ligat

31 ing the entire assembly, but the U4 snRNA 5' stem-loop adopts alternative orientations each stabilize

32 MEPCE is dependent on the structure of the 3 stem loop and the closed form of 7SK RNA.

33 he impact of several key components of miRNA stem loops and their flanking sequences on the efficienc

34 Two types of structural element, a stem-loop and a poly(G) motif, not only inhibit translat

35 sed of ROQ and HEPN domains, and can bind to stem-loop and double-stranded RNAs simultaneously.

36 tem-loop binding protein (SLBP) binds to the stem-loop and is required for all steps in histone mRNA

37 mic structural rearrangements between tandem stem-loop and mRNA pseudoknot structures in two of the s

38 from the 5'-UTR, including the terminator 5'-stem-loop and Shine-Dalgarno blocking hairpins, demonstr

39 e-stranded region of U4 snRNA between its 3' stem-loop and the U4/U6 snRNA stem I is loaded into the

40 One product mapped to a predicted 5'-SL (stem-loop) and two others mapped just 5' to Shine-Dalgar

41 tures, the cleavage site is sequestered in a stem-loop, and gene expression is unobstructed.

42 viral genome, built atomic models for 16 RNA stem-loops, and identified three conserved motifs of RNA

43 croRNAs representing the miR-143 and miR-145 stem loops are genomically clustered.

44 recurrent APOBEC-signature mutations not in stem-loops are enriched in well-characterized driver gen

45 h the sequences and the structure of the two stem-loops are important for CRD-BP-GLI1 RNA binding.

46 Here, we used a stem-loop array reverse-transcription polymerase chain r

47 RNAs at a single site within their anticodon stem loop (ASL) to generate tRNA halves.

48 in the presence of a near-cognate anticodon stem-loop (ASL).

49 tion initiating with oligouridylation of the stem loop at the 3' end.

50 The stem-loop at the 3' end of the genome interacts extensiv

51 Genetic ablation of the miR-21 stem loop attenuated neointimal formation in mice post-s

52 In particular, stem-loop A (SLA) and stem-loop B (SLB) located in the 5' untranslated region

53 siRNA sequences into a Dicer-independent RNA stem-loop based on pre-miR-451 microRNA-which is highly

54 text and that a well-conserved predicted RNA stem-loop begins 14 nucleotides downstream.

55 ant by introducing an additional copy of the stem-loop between the NS7- and VP1-coding regions.

56 Stem-loop binding protein (SLBP) binds to the stem-loop

57 eduction was correlated with lower levels of stem-loop binding protein (SLBP), which is known to cont

58 SLBP (stem-loop binding protein) is a highly conserved factor

59 eveals that eIF3 uses different modes of RNA stem-loop binding to exert either translational activati

60 nd their nucleotides that hydrogen bond with stem-loop-binding proteins.

61 and Cy5 on dsRNA, using complexes of an RNA stem-loop bound to L5 protein determined at 2.4 A resolu

62 lly sequestered in a branchpoint-interacting stem-loop (BSL)(8), but whether the human U2 snRNA folds

63 f the structure and dynamics of the UUCG RNA stem-loop by combining molecular dynamics simulations wi

64 Thus, the stem-loops can modulate gene expression by sterically hi

65 Our results suggest that mRNA stem-loops can transiently escape the ribosome helicase

66 anism mediated by spontaneous extrusion of a stem-loop catalytic intermediate.

67 nslated region (UTR) of NT8 contains a short stem-loop cis-element that is necessary for the regulati

68 biomineralisation proteins Mms13 and MmsF on stem-loop coiled-coil scaffold proteins (Mms13cc/MmsFcc)

69 aged single beta-actin mRNAs tagged with MS2 stem loops colocalizing with labeled ribosomes to determ

70 nigenomic RNA indicates formation of a small stem-loop composed of the HSPA8 motif, a 3' stem-loop (n

71 V-1 primer binding site, (-)PBS, both in its stem loop conformation and in the corresponding (-)/(+)P

72 re, involving the recognition of ssRNA via a stem-loop conformation, together with our two previous s

73 In bulge-stem-loop constructs of HIV-1 transactivation response e

74 ination, we targeted LRV1 using long-hairpin/stem-loop constructs similar to those effective against

75 tional Rev/RRE activity compared to the four stem-loop counterpart.

76 Furthermore, by inserting a small stem-loop (DeltaG = -4.8 kcal/mol) in the middle of the

77 itative analysis showed that the stimulatory stem loop destabilizes the hybrid state and elevates the

78 The helical axis of the GUAAY stem loop diverges ~70 degrees from the angle of inserti

79 c detection - and their incorporation onto a stem loop DNA probe.

80 The biosensor consists of a Stem-Loop DNA (SL-DNA) probe covalently attached to the

81 system is based on a conformation-switching stem-loop DNA scaffold that presents a small-molecule, p

82 single strands or the single-strand loops of stem-loop DNA structures.

83 structure utilizes an electrode-immobilized stem-loop (DNA-hairpin) probe and two DNA adaptor strand

84 yo-microscopy (cryo-EM) reveals that the HIV stem-loop docks into the A site of the ribosome.

85 report that the HalV 5' UTR comprises small stem-loop domains separated by long single-stranded area

86 irected at architectural motifs in BC RNA 5' stem-loop domains that serve as dendritic targeting elem

87 loop; both structures adopt a novel hairpin (stem-loop duplex) conformation in the long loop.

88 cific RNA-protein complexes, such as histone stem-loop elements and their nucleotides that hydrogen b

89 A DIG tag on one arm of the stem loop enables binding to the magnetic label, while a

90 Through randomizing bases in anticodon stem-loop followed by a functional selection, we identif

91 transcripts (pri-miRNAs), with the choice of stem loops for initial processing largely determining wh

92 se data highlight the significance of the 5' stem-loop for the 50-nt bypassing and further enhance ap

93 ication assays, we demonstrate that the five stem-loop form of the RRE promotes greater functional Re

94 hown to mediate efficient nascent transcript stem loop formation-dependent RNA-DNA hybrid realignment

95 n Qrr4 vital for stability, Hfq interaction, stem-loop formation, and base pairing to both luxR and l

96 We have identified a potential mRNA stem-loop forming structure in the 5' untranslated regio

97 5' untranslated region contains a predicted stem-loop-forming structure adjacent to the +59 motif.

98 ependent RNA polymerase, confirming that the stem-loop forms the core of the norovirus subgenomic pro

99 newal, DDX6 associates with YBX1 to bind the stem loops found in the 3' UTRs of regulators of prolife

100 f the HIV type 1 (HIV-1) RNA frameshift site stem-loop, frameshift efficiency, and infectivity, using

101 eriments, we studied how frameshift-inducing stem-loops from E. coli dnaX mRNA and the gag-pol transc

102 in multiple kinetoplastid species, putative stem-loops from L. donovani and Trypanosoma brucei nucle

103 epeat (full-DR-crRNA) sequence with specific stem-loop G-C base substitutions exhibit increased editi

104 c stability, high repetitiveness, and stable stem-loop/hairpin secondary structures that are hallmark

105 knot structure with coaxial alignment of the stem-loop helix (P1) and the pseudoknot helix (PK).

106 Though the structure of the substrate stem loop I (SLI)-stem loop V (SLV) kissing loop junctio

107 inding (Kd = 120 +/- 10 nm) to the conserved stem-loop I of the 3'-BTE by exposing more unpaired base

108 aled that the 5'U-Ubulge and central loop of stem-loop I or RNA motif 3 of 7SK are required for trans

109 Since 5' stem-loop I RNA forms a ribonucleoprotein complex with c

110 These deletions lacked portions of 5' stem-loop I, which is an RNA secondary structure require

111 part through specific interactions with its stem loop II (SLII) IRES domain.

112 thylation of two conserved adenosines in the stem loop II region of HIV-1 Rev response element (RRE)

113 Previous work identified the stem loop II structure of the EV71 internal ribosomal en

114 We also present evidence that vsRNA1 targets stem-loop II of the viral 5' untranslated region and inh

115 een the two 5'UTRs in the highly substituted stem-loop II region (SLII).

116 s a result of greater Shannon entropy in RRE stem-loop II, which is key to primary Rev binding.IMPORT

117 Destabilization of the stem-loop immediately upstream of the pyrimidine-tract a

118 Structure-function studies identify a stem-loop in 5' leader of tRNAvalV that inhibits RNase P

119 s followed by formation of a strong, GC-rich stem-loop in the RNA exit channel of RNA polymerase (RNA

120 d requirement of a substructure of U6atac 3' stem-loop in U12-dependent in vivo splicing.

121 the trans-acting factor that binds the LdNT3 stem-loop in vivo is substantially higher than required

122 t cyclin F co-evolved with the appearance of stem-loops in vertebrate H2AFX mRNA to mediate SLBP degr

123 conserved helix 8 contains an unprecedented stem-loop insertion.

124 ix 8 alterations including single and double stem-loop insertions as well as loop diminutions affecti

125 Reporter assays confirmed that cap-distal stem-loop insertions increase dependence on Ded1 but not

126 SLIRP (SRA stem-loop interacting RNA binding protein) was identifie

127 SRA stem-loop-interacting RNA-binding protein (SLIRP) is a v

128 nd subgenomic RNA1 via long-distance kissing stem-loop interaction to facilitate translation.

129 ing conversion of metastable, intramolecular stem-loops into more stable heteroduplexes.

130 We demonstrate that the conserved stem-loop is essential for MNV viability.

131 NMR shows that the 5' stem-loop is highly dynamic.

132 op interaction between the 3'BTE and a 5'UTR stem-loop is necessary for translation to initiate.

133 The conserved stem-loop is positioned 6 nucleotides 3' of the start si

134 mportance of different nucleotides in the 5' stem-loop is revealed by mutagenesis studies.

135 teraction of PCBP2 with the apical region of stem-loop IV (SLIVm) of poliovirus RNA in its full-lengt

136 presence of host factor PCBP2 that binds to stem-loop IV of the IRES.

137 r with one another (similar to characterized stem-loop kissing interactions) forming a hitherto undes

138 use of sgRNAs truncated for the 3'-terminal stem loops leads to reduced activity during genomic edit

139 re analyses from NGS indicated extensive TAR stem-loop malformations predicted to inactivate proviral

140 r, poly-A-containing arms flanking the miRNA stem-loop markedly enhanced transgenic miRNA expression.

141 he temperature-dependent TSS selection and a stem-loop masking of ribosome binding sites was predicte

142 The only previous proposal of stem loop mediated slippage, which was in Ebola virus ex

143 tes yeast and mammalian ribosomes and an RNA stem-loop mimic of the sarcin/ricin loop (SRL) at a high

144 after stenting in pigs, including the miR-21 stem loop miRNAs.

145 l predicted sites within the 'stem' when the stem-loop model was first proposed and no mutations have

146 onstrate the potential importance of the two-stem-loop motif as a target region for the inhibition of

147 The role of the two-stem-loop motif in influencing CRD-BP-RNA interaction wa

148 LARP6 binds a stem-loop motif in the 5'-UTR of the mRNAs encoding the

149 ent (CTE), a cis-acting 2-fold symmetric RNA stem-loop motif.

150 , topologically organized by an adenine-rich stem-loop motif.

151 y junction (FWJ) and its appropriate control stem-loop motifs (Dumbbell, GAAATT-Hp, CTATC-Hp, GTGC-Hp

152 en-J) junction and their appropriate control stem-loop motifs (GAAATT-Hp, CTATC-Hp, and Dumbbell).

153 d-J and Open-J with those of their component stem-loop motifs allowed us to be more specific about th

154 A given rRNA helix or stem-loop must be allocated uniquely to a single domain.

155 We found a c.915+15A>C exon 10/intron 10 stem loop mutation in all affected subjects but not in t

156 Eleven MAPT gene splice site stem loop mutations were identified over time except for

157 stem-loop composed of the HSPA8 motif, a 3' stem-loop (nucleotides 1868-1890) that is similar to a p

158 rmined that the xRRM of LARP7 binds to the 3 stem loop of 7SK and inhibits the methyltransferase acti

159 Mutation of the 5' stem-loop of Col1a1 mRNA, which inhibits binding of LARP

160 demonstrate that p65 protein-binding apical stem-loop of U12 snRNA can be replaced by this U6atac di

161 binding protein, also binds to the distal 3' stem-loop of U6atac.

162 o obtain l-RNA aptamers that bind the distal stem-loop of various precursor microRNAs (pre-miRs).

163 the effect of the +59 motif and the adjacent stem-loop on cagA transcript levels and cagA mRNA stabil

164 can act by pairing with ribosomal RNA or as stem loops or pseudoknots even with one component being

165 sin-V dimer "walking" on an actin fibre, RNA stem-loop packing, and the simulation of cell motion and

166 Moreover, experimental investigation through stem-loop PCR of a random collection of newly discovered

167 ds out among these miRNAs because its entire stem-loop precursor overlaps the coding sequence for the

168 de RNAs, some of which are predicted to have stem-loop precursors potentially representing miRNAs.

169 nse oligonucleotide, containing two distinct stem-loops present in nts 320-380 of GLI1 RNA, was found

170 Key to this method is a modified stem loop primer that facilitates downstream signal ampl

171 signal 20-fold when compared to traditional stem loop primers.

172 For both stem-loop probe and linear probe electrochemical DNA sen

173 NA adaptor strands complementary to both the stem-loop probe and the targeted fragment of a ZIKV ampl

174 To increase target miRNA specificity, a stem-loop probe was introduced instead of a linear probe

175 oelectrodes in the fabrication of linear and stem-loop probe-based electrochemical DNA (E-DNA) sensor

176 Second, an additional RNA stem-loop promotes Rho activity and controls the locatio

177 expressed during S-phase end in a conserved stem-loop rather than a polyA tail.

178 rophores or affinity labels into a short RNA stem loop recognition motif by exchange of a guanine res

179 The highly conserved stem loop region of hemagglutinin has been shown to unde

180 Helix 69 (H69) is a 19-nt stem-loop region from the large subunit ribosomal RNA.

181 u1 specifically interacted with the variable-stem-loop region in the 3' NTR and domain IIId of the HC

182 Our previous work demonstrated that the 3' stem-loop region of U6atac snRNA contains a U12-dependen

183 miRNAs, including the sequences flanking the stem-loop region, contributed to high affinity EWS bindi

184 As) are small regulatory RNAs processed from stem-loop regions of primary transcripts (pri-miRNAs), w

185 als a decrease in secondary structure within stem-loop regions of these transcripts in mta mutant pla

186 Mutant MNV RNAs with substitutions in the stem-loop replicated poorly until they accumulated mutat

187 RNA stem loops represent an important class of known hnRNP A

188 esp. HCV] contribute to the formation of the stem-loop [resp. double stem-loop] secondary structure k

189 RNA and mRNA profiling using high throughput stem-loop reverse-transcriptase quantitative polymerase

190 ts with severe asthma using high-throughput, stem-loop, reverse transcriptase quantitative real-time

191 ntitumor activity of a unique RIG-I agonist, stem loop RNA (SLR) 14.

192 g messenger RNAs (mRNAs) via a high-affinity stem-loop RNA binding domain interaction, enabling high-

193 Furthermore, overexpression of a 5' stem-loop RNA molecular decoy that sequesters LARP6, pre

194 The SECIS element is a stem-loop RNA structure immediately following the UGA co

195 SGs assembled by stem-loop RNA triggers are ATP-sensitive, regulated by h

196 hilli and tomato RNAi lines was confirmed by stem-loop RT-PCR.

197 ements), and form a thermodynamically stable stem-loop secondary structure (structure requirement).

198 lippery sequence and an immediate downstream stem-loop secondary structure, together called frameshif

199 ic-C target site is predicted to fold into a stem-loop secondary structure.

200 the formation of the stem-loop [resp. double stem-loop] secondary structure known as the frameshift s

201 mulated mutations that revert to restore the stem-loop sequence and/or structure.

202 The stem-loop sequence functions in a noncoding context, as

203 , in vitro biochemical data suggest that the stem-loop sequence is sufficient for the initiation of v

204 n via an RNA-binding protein that recognizes stem-loop sequences engineered into the viral genome.

205 sMIR390-based precursors that include distal stem-loop sequences from Arabidopsis thaliana MIR390a (A

206 ary structural elements, only a single 15-nt stem-loop showed a strong correlation with splicing, act

207 cture of QueG bound to a tRNA(Tyr) anticodon stem loop shows how this enzyme uses a HEAT-like domain

208 R/sfRNA of the wild-type virus mapped to RNA stem-loops SL-III and 3' SL, which stick out of the thre

209 ding the transcription factor Xbp1 at a dual stem-loop (SL) structure, leading to Xbp1 splicing and a

210 are not polyadenylated, but instead end in a stem-loop (SL) structure.

211 c sRNAs, Pxr is predicted to fold into three stem loops (SL1-SL3).

212 The structure is composed of two stem-loops (SLs) that are predicted to form in MYB33/65

213 ind that upon encountering the ribosome, the stem-loops strongly inhibit A-site tRNA binding and ribo

214 ing the interaction of a West Nile virus RNA stem loop structure with the human T cell-restricted int

215 y between the triple helix and its precursor stem loop structure.

216 mented by binding of protein LARP6 to the 5' stem-loop structure (5'SL), which is found exclusively i

217 terminal capsid coding region, including the stem-loop structure (5'SL6) at the 3' end of the promote

218 The noise-enhancing effect of the stem-loop structure also remains operational when combin

219 These results indicate that both a predicted stem-loop structure and a strain-specific +59 motif in t

220 abels to monitor changes in the mini TAR DNA stem-loop structure brought on by the HIV-1 nucleocapsid

221 The ENE, a stem-loop structure containing a U-rich internal loop, i

222 DICER cleaves the stem-loop structure from pre-miRNAs, allowing them to di

223 s sequence, translation activity relies on a stem-loop structure identified at nucleotide positions 4

224 versatile protein that can interact with the stem-loop structure in RNA and with G quadruplex DNA.

225 tically, MCPIP1 physically interacted with a stem-loop structure in the 3' untranslated region of the

226 We previously characterized SLC, a stem-loop structure in the 5' untranslated region (UTR)

227 Our results suggest that the stem-loop structure in the vacA 5' UTR is an important d

228 e local stability of the frameshift site RNA stem-loop structure increase frameshift efficiency 2-fol

229 on electrode surface, biomarker can open the stem-loop structure of H(1) and activates HCR.

230 The alternate opening of the stem-loop structure of H(1) and H(2)-AuNPs finally resul

231 ect binding between endogenous TruB1 and the stem-loop structure of pri-let-7, which also binds Lin28

232 presence of an evolutionarily conserved RNA stem-loop structure on the negative-sense RNA, the compl

233 mutagenesis, we found that disruption of the stem-loop structure reduced steady-state mRNA levels bet

234 ound that mutations predicted to disrupt the stem-loop structure resulted in decreased steady-state l

235 enesis of the +59 motif without altering the stem-loop structure resulted in reduced steady-state cag

236 ere we describe the identification of an RNA stem-loop structure that functions as the core of the no

237 Each unit of the repeat forms a stem-loop structure with the potential to produce microR

238 for ZCCHC4-RNA recognition and a role of the stem-loop structure within substrate in governing the su

239 protected" by the steric hindrance of the MB stem-loop structure, accessible.

240 #9, contains a stem-loop structure, and can displace the hemi-methylate

241 existence of a preferred binding site in the stem-loop structure, in which ametantrone intercalates i

242 e linked to cycles of folding/unfolding of a stem-loop structure, or to interconversion between highe

243 ement when present in the unpaired loop of a stem-loop structure.

244 ensity of the expanded CAG repeats to form a stem-loop structure.

245 NT3 mRNA 3' UTR that is predicted to adopt a stem-loop structure.

246 nded region, but surprisingly, also a 5'-end stem-loop structure.

247 ranslation of reporter luciferase mRNAs with stem-loop structured or unstructured 5'-UTR.

248 tructures for these RNA molecules, including stem-loop structures and long-range pseudoknots.

249 The sites of truncation coincide with stem-loop structures and SRP9/14 binding sites in the Al

250 osome is an efficient helicase, certain mRNA stem-loop structures are known to impede ribosome moveme

251 s within these transcripts predicted to form stem-loop structures are processed by Microprocessor and

252 -derived sequences with predicted stem-bulge-stem-loop structures are sufficient to mediate mRNA tran

253 The switch mechanism relies on two putative stem-loop structures contained within the 5' untranslate

254 se results suggest that disruption of exonic stem-loop structures immediately upstream (but not downs

255 in Escherichia coli that result in extensive stem-loop structures in their mRNAs.

256 nking short base-paired DNA stretches, as in stem-loop structures of single-stranded DNA (ssDNA) deri

257 toxin hamper its translation by stabilizing stem-loop structures that sequester the Shine-Dalgarno s

258 resent, NCp7 enhanced the annealing of their stem-loop structures to form duplex DNA-RNA.

259 Finally, stem-loop structures with similar configurations were id

260 emities of small RNA footprints or predicted stem-loop structures, in agreement with the model of pas

261 in plants rely extensively on the search for stem-loop structures, leading to high false negative rat

262 hown to cleave within 3'-untranslated region stem-loop structures, which contain double-stranded RNA,

263 ound at sites encoding unpaired bases of RNA stem-loop structures.

264 in these RNA molecules are predicted to form stem-loop structures.

265 nserved terminal loop motif within short RNA stem-loop structures.

266 strictly conserved sequences and form stable stem-loop structures.

267 Mutational analysis of these stem loops supports a model in which induction of an alt

268 binding surface to recognize the base of its stem-loop target RNA and extends a newly-formed alpha he

269 ence elements of several native hnRNP A1-RNA stem loop targets.

270 We describe the final missing stem loop tau mutation predicted 15 years ago.

271 cytosines in an upstream, EvoFold-predicted stem loop (termed ESL) that binds FUBP1/2.

272 The template-distal domain is a short stem-loop, termed equivalent CR4/5 (eCR4/5).

273 As f and C are changed, the stem-loop tertiary interactions rupture first, followed

274 ingle sgRNA, modified to contain MS2-derived stem loops that recruit fusion proteins consisting of th

275 equired the proper spatial organization of a stem-loop that is mainly determined by the U-rich elemen

276 ta suggest that 3D interacts in cis with RNA stem-loops that are essential for viral RNA replication.

277 of dispersed assembly signals in the form of stem-loops that each present a minimal CP-binding motif

278 in modular domains consisting of one or more stem-loops that harbor conserved RNA motifs critical for

279 In the tRNA anticodon stem-loop, the anticodon sequence is correlated with a b

280 -binding motif, the relative placement of PS stem-loops, their number, and their folding propensity.

281 y of the RNA structure, the proximity of the stem loop to the slippage site, the length and compositi

282 from the ligand-binding pocket, exposing its stem-loop to base pair with the 3' RBS.

283 and for the detailed structural change from stem-loop to duplex RNA-DNA when complementary RNA was p

284 ement), that regulated levels of all pri-miR stem loop transcription and resulting microRNA expressio

285 At high temperatures, the stem-loop unfolds, allowing for mRNA degradation and tur

286 for recognition, and reveals changes in the stem-loop upon protein binding.

287 structure of the substrate stem loop I (SLI)-stem loop V (SLV) kissing loop junction of the Varkud Sa

288 covery of a "hit" molecule able to bind this stem-loop, we now report the development of compounds di

289 respectively, the stabilising effects of the stem-loop were even more pronounced.

290 y that completely unfolds the tRNA anticodon stem-loop, which is likely critical for recognition of b

291 ice leader downstream of the let-7 precursor stem-loop, which produces a short polyadenylated downstr

292 uses an oligodeoxynucleotide that folds to a stem-loop with a TG-rich double-stranded region and a 3'

293 These RNAs form stem-loops with a conserved loop motif that trigger sequ

294 condary structures of these regions revealed stem-loops with conservation of structure and a common m

295 -coat protein interactions among 15 of these stem-loops with diverse sequences.

296 ied clustered hyperediting within long dsRNA stem loops within 3' untranslated regions of endogenous

297 agen synthesis and interacts with a specific stem-loop within the 5' UTR of the collagen mRNA.

298 lear magnetic resonance (NMR) structure of a stem-loop within the c-JUN 5' UTR recognized by eIF3 and

299 de sequence followed by an RNA pseudoknot or stem-loop within the mRNA.

300 Homeobox (Hox) 5' UTR, we identify a modular stem-loop within this element that binds to a single ES,