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1 ant information for evolutionary biology and taxonomy.
2 s should be unified into an all-encompassing taxonomy.
3 , and to develop the framework of a unifying taxonomy.
4 major changes in our understanding of legume taxonomy.
5 cts SCP-SCP relationships beyond the current taxonomy.
6 s and merges them into an improved consensus taxonomy.
7 ues [1] provide another viewpoint on giraffe taxonomy.
8 ncer-related references from PubMed into the taxonomy.
9 existing visualization space revealed by our taxonomy.
10 chieving a full understanding of collembolan taxonomy.
11 Accurate species delimitation underpins good taxonomy.
12 ournal editors and others in regard to viral taxonomy.
13 chemes for parasites and changes in parasite taxonomy.
14 c given the lack of standardised methods and taxonomy.
15 nnotation on the full breadth of prokaryotic taxonomy.
16 eomes that was consistent with virus or host taxonomy.
17 and Related Health Problems, Tenth Revision taxonomy.
18 r testing the supremacy of the assigned LCA* taxonomy.
19 symbiosis, irrespective of host clade age or taxonomy.
20 ild species, even when controlling for plant taxonomy.
21 phylogeny was instead dominated by bacterial taxonomy.
22 gs are distributed in the context of species taxonomy.
23 hly resolved, genome phylogeny-based digital taxonomy.
24 rtant discrepancies with the phenotype-based taxonomy.
25 ive Practice and Organisation of Care (EPOC) taxonomy.
26 ore Outcome Measures in Effectiveness Trials taxonomy.
27 nome phylogeny-based and digital prokaryotic taxonomy.
28 ded database of forest plots with up-to-date taxonomy.
29 ith the existing morphology-based subspecies taxonomy.
30 interspecific gene flow, is not reflected by taxonomy.
31 Center for Biotechnology Information (NCBI) Taxonomy.
32 diverse biomes in oxidoreductases but not in taxonomy.
33 rounded and operationally useful interneuron taxonomy.
34 classification than is provided by existing taxonomies.
35 g nomenclature and limited alignment between taxonomies.
36 ifferential relative abundances of microbial taxonomies.
37 What do you think of when you think of taxonomy?
38 re typically found in each category in large taxonomies?
40 tion in the short-chain fatty acid-producing taxonomies Akkermansia, Christensenellaceae, Clostridium
41 trials across diseases using a standardized taxonomy allowing a comparison between global health res
42 st that combining environment, ontogeny, and taxonomy allows for a better understanding of important
43 and predict SCA may be enhanced by refining taxonomy along phenotypical and pathophysiological "axes
45 y providing a succinct overview of planarian taxonomy, anatomy, available tools and the molecular orc
46 combining geometric morphometrics numerical taxonomy, ancient mitochondrial DNA and direct radiocarb
47 tified associations of 9 loci with microbial taxonomies and 33 loci with microbial pathways and gene
49 ifferential relative abundances of microbial taxonomies and to perform meta-analysis examining the he
50 can be readily applied to new or established taxonomies and was applied herein to diverse cell type d
51 y across seasons and latitudes with plankton taxonomy and activity, and following the seascape of oce
55 essing questions in biogeography, evolution, taxonomy and conservation of the cryptic subterranean fa
56 We created an extensive Hallmarks of Cancer taxonomy and developed automatic text mining methodology
63 QIIME2 and QIITA packages and produces both taxonomy and gene abundance profile tables with a single
64 dies have characterized the lake's microbial taxonomy and given rise to intriguing ecological questio
65 ppearance properties of animals such as folk taxonomy and habitat (e.g., bats are textured like mamma
67 by phylogenetic relatedness to humans, host taxonomy and human population within a species range-whi
68 r investigations of the original coloration, taxonomy and internal anatomy of fossil vertebrates.
69 s and specific populations to understand the taxonomy and metabolism both spatially and temporally ac
70 ting future research directions based on our taxonomy and motivated by the comments received by our d
72 nition and acknowledgment of novel bacterial taxonomy and nomenclature revisions can impact clinical
73 uld be identified in a single assay (scope), taxonomy and nomenclature, discriminating colonizers fro
76 over, we show the effects of barcode marker, taxonomy and relative biomass of the targeted specimens
78 entation are consistently predictive of host taxonomy and that prediction k-mer composition improves
79 Comparisons between eDNA, community DNA, taxonomy and UK species abundance data further show sign
80 results in more diversity than morphological taxonomy, and (5) the nonindigenous copepod Oithona davi
81 t virophage databases, help refine virophage taxonomy, and establish baseline ecological hypotheses a
82 fluent over 21 months, and cross-resistance, taxonomy, and monthly changes were characterized under b
83 icult to assign reads at the lowest level of taxonomy, and reads are typically assigned to taxonomic
86 ted input file and outputs a QIIME-formatted taxonomy-annotated BIOM file for an entire MiSeq run of
95 ustered into operational taxonomic units and taxonomy assigned via the Human Oral Microbiome Database
96 an implementation of a published method for taxonomy assignment disambiguation with empirical Bayesi
97 Our results demonstrate that independent taxonomy assignment tools classify unique members of the
98 %) replication of existing genus-level viral taxonomy assignments from the International Committee on
99 biological information, such as the reliable taxonomy assignments of some contigs, SolidBin construct
100 RNA target gene sequencing was performed and taxonomy assignments were derived using the Greengenes d
101 nstrate human-mouse conservation of cellular taxonomy at the molecular level for neurons vulnerable a
102 -dependent cellular states to existing brain taxonomy atlases and sheds light on the elusive mechanis
103 etected in our samples were marine, based on taxonomy, back trajectories, and source tracking analysi
104 ision medicine has been to re-define disease taxonomies based on molecular characteristics rather tha
105 Trait-based approaches powerfully complement taxonomy-based approaches to understanding the mechanism
106 mplicon sequence data can be combined at the taxonomy-based level to assess bacterial community struc
108 tains ancillary information (e.g. ecoregion, taxonomy, biogeography, etc.) that facilitates interpret
109 lecular signatures adds complexity to tumour taxonomy but is key to personalising diagnosis, treatmen
110 the biological behavior of cancers and their taxonomy, but has not yet been applied to characterize c
111 It correlates significantly with the current taxonomy, but the observed discrepancies reveal both (1)
112 We address the current state of integrative taxonomy by using as a case study an international proje
113 average success rate in classifying all four taxonomy categories correctly was found to be >99%.
116 framework for a contextually informed skills taxonomy consisting of 12 skill elements with examples o
118 te how environment, developmental stage, and taxonomy contribute to single-trait variation and multid
120 arratively review topics of interest such as taxonomy, cross-reactivity, prevalence, clinical relevan
121 alignments against a database that contains taxonomy data and displaying them in an interactive web
122 ject were aligned against the NCBI bacterial taxonomy database and the Comprehensive Antibiotic Resis
123 cal resources, currently comprising the NCBI taxonomy database, IntEnz, GO, Pfam, InterPro, SCOP, CAT
124 work that helps taxonomists and the users of taxonomy decide which taxa and names should be used by s
125 d that environment, developmental stage, and taxonomy differentially contribute to functional dimensi
126 s review briefly presents current tospovirus taxonomy, diversity, molecular biology, and cytopatholog
127 advanced our understanding of K. pneumoniae taxonomy, ecology and evolution as well as the diversity
129 ion with broad applications from traditional taxonomy, ecology, forensics, food analysis, and environ
131 comprehensive and up-to-date information on taxonomy, ethnomedicinal uses, phytochemical composition
132 ic community is losing valuable resources as taxonomy experts age and retire, and funding for morphol
133 finition of Myocardial Infarction provides a taxonomy for acute myocardial injury, including 5 subtyp
137 ein flexibility form the basis of a rigorous taxonomy for the description and classification of prote
138 tein analysis offers a unique, complementary taxonomy for understanding CTC biology and ascertaining
141 ng several k-mer lengths for predicting host taxonomy from among approximately 32 000 prokaryotic gen
142 ed to as the supervised inference of feature taxonomy from ensemble randomization (SIFTER), which sup
145 menon exists across multiple levels of viral taxonomy, from the Baltimore classification viral groups
146 , which links to related information such as taxonomy, genomes, protein sequences and structures, and
147 ndation for the development of a new disease taxonomy grounded in biology, rather than clinical prese
149 less, the general application of integrative taxonomy has not been without issue, revealing challenge
150 that biological factors inherited from plant taxonomies have a significant effect on controlling leaf
153 oorly known, including the influence of host taxonomy, host life stage, host defence, and host geogra
156 e subdivided into the following interrelated taxonomy: Improved electrolytes and electrolyte additive
158 tures predominate in early visual cortex and taxonomy in lateral occipital and ventral temporal corti
164 able refinement of prostate cancer molecular taxonomy into clinically meaningful and treatable subtyp
166 h old-fashioned conceptions to the contrary, taxonomy is alive today although constantly struggling f
167 e that a more nuanced model based on Bloom's taxonomy is better suited to EHL and to future research
173 s are found across primate species that span taxonomy lines, indicating common evolutionary developme
174 the five forms of teaching presented in the taxonomy may constitute exaptations rather than adaptati
177 cords with a variety of other data including taxonomy nodes, genomes, protein structures, and biomedi
179 We used a grounded theory approach to build taxonomies of "discursive" (argument-based) and "instrum
181 evision: Neuroscientists should revise their taxonomies of cognitive constructs on the basis of brain
186 vances that have allowed for a more accurate taxonomy of APC subsets found in both mouse and human sk
189 dhood and adult cases, we describe a revised taxonomy of B-ALL incorporating 23 subtypes defined by c
193 =171), Uppsala cohort (n=249), and Molecular Taxonomy of Breast Cancer International Consortium [META
194 nformatics approach exploring both Molecular Taxonomy of Breast Cancer International Consortium and T
195 ODE data, prognostic prediction in Molecular Taxonomy of Breast Cancer International Consortium and T
197 e different types of failure, and show how a taxonomy of causal interactions that result in failure e
200 (Deltam) to classify unknown features into a taxonomy of chemical kingdom, super class, class, and su
201 , this Series paper discusses a possible new taxonomy of COPD, the role of endotypes and associated b
207 tion provides insight into the diversity and taxonomy of mycoviruses and coevolution of mycoviruses a
209 ant step towards a molecular mechanism-based taxonomy of neurological disorders, which could help in
210 ortical cells have not resulted in a unified taxonomy of neuronal or glial cell types, partly due to
211 ng enteroendocrine cells and constructed the taxonomy of newly identified subtypes, and distinguished
214 ture efforts need to focus on physiology and taxonomy of pelagic fauna in the study region, our study
216 s shortcomings that characterize the current taxonomy of postcomatose disorders of consciousness (DoC
218 rocesses is a well-defined categorization or taxonomy of psychological processes and their interrelat
219 ructing a biologically informed, data-driven taxonomy of psychological processes.SIGNIFICANCE STATEME
220 iewers, I argue that, although reforming the taxonomy of psychology will lead to great insights in th
221 g functional diversity and interrogating the taxonomy of psychology; describe the ways in which neura
222 This synthesis provides the foundation for a taxonomy of putative types of dysfunction, which cuts ac
223 Four issues were prioritised: developing a taxonomy of research objectives that can be matched with
225 scovery tool, we find a unexpectedly diverse taxonomy of sequences that are just as membrane-active a
226 We propose here a new, environment-mediated taxonomy of social behaviors where organisms are categor
232 dendrogram shows consistency with the viral taxonomy of the ICTV and the Baltimore classification of
235 sequencing (scRNA-seq) to define a cellular taxonomy of the mouse bone marrow stroma and its perturb
237 mic analysis is to annotate the function and taxonomy of the sequencing reads generated from a microb
240 tivated organisms provides clues on both the taxonomy of their producers and the redox processes thes
243 r of important issues that have confused the taxonomy of this family, and analyse the mitogenomes of
244 iomyopathies, influencing the definition and taxonomy of this important chapter of cardiovascular dis
245 rent progress in elucidating the biology and taxonomy of this important group is rapid and promises a
246 introduce the recently adopted comprehensive taxonomy of viruses based on phylogenomic analyses, as a
247 ignments from the International Committee on Taxonomy of Viruses for National Center for Biotechnolog
249 mental gradients trump those of ontogeny and taxonomy on important functional dimensions related to r
251 search, but we are far from having an agreed taxonomy or factor structure of relevant processes.
253 lights the potential benefits of integrative taxonomy, particularly simultaneous use of molecular/geo
256 practical challenges facing modern microbial taxonomy, provide an overview of complexities of classif
257 variable regions, integrated with phylogeny, taxonomy, public participant data, and controlled partic
260 o etiology and its potential contribution to taxonomy revision are described, particularly within the
262 s into account the hierarchical and the flat taxonomy similarity between function labels, and defines
263 patient-centered Strength of Recommendation Taxonomy (SORT) method to evaluate and grade the quality
265 lgorithm popularized by MEGAN, and that LCA* taxonomy strikes a balance between specificity and confi
267 n the Venn diagram, and includes a graphical taxonomy summary, alpha diversity metrics, Principal Coo
268 tids has provided comparative information on taxonomy, synonymy, and character-state differentiation.
270 istently more accurate in identifying contig taxonomy than the lowest common ancestor algorithm popul
272 Network Fusion (DNF), to infer scalable drug taxonomies that rely only on basic drug characteristics
273 whole genome gene-sharing profiles for virus taxonomy that integrates distance-based hierarchical clu
274 sorder and introduce a new protein structure taxonomy that is based on quantifiable metrics of a prot
275 cellular attributes, has made constructing a taxonomy that is useful for ecologists nearly impossible
277 Carolus Linnaeus ( 1 , p. 19), the father of taxonomy, "The first step in wisdom is to know the thing
279 generally consistent (assignment of the same taxonomy to a given OTU) across datasets and ranks; a sm
282 NCBI Taxonomic Database hierarchy to assign taxonomy to contigs assembled from environmental sequenc
284 lic potential rather than focusing purely on taxonomy to find therapeutic and diagnostic targets, and
289 s thus clear that SSU rRNA based operational taxonomy units, even at the most stringent cut-off can r
290 ilds on the information provided in the last taxonomy update in this journal to summarize new and rev
291 nt clinically determined periodontal disease taxonomies, upon replication and mechanistic validation
292 n for these five lissoirs, we reassess their taxonomy using a non-destructive ZooMS methodology based
296 rified with eight sample series of different taxonomies, which indicates a universal applicability of
298 distinctive genetic alterations for disease taxonomy with relevance for diagnostic evaluation and th
299 sistance profiles were largely influenced by taxonomy, with some variations associated with sampling
300 obial environment largely focus on microbial taxonomy, without clarifying their health benefits.