ライフサイエンスコーパス: tiling

1 baxonal domain-a phenomenon we term synaptic tiling.

2 ne protein Turtle, a key regulator of axonal tiling.

3 roteins such as GPR56, and thus aberrant RGC tiling.

4 iling, revealing an additional mechanism for tiling.

5 et protocol and efficient server-based image tiling.

6 long-standing theoretical studies on random tiling.

7 microtubule (MT) stability necessary for RGC tiling.

8 pidermal cells and in dendrite branching and tiling.

9 embles into a two-dimensional rhombus random tiling.

10 ates self-avoidance, whereas Dscam2 mediates tiling.

11 rogliogenesis and the stability of microglia tiling.

12 rtening of filopodia, and errors in cellular tiling.

13 be described via an icosahedrally symmetric tiling.

14 t DSCAM functions in both self-avoidance and tiling.

15 rystalline structure mapped upon the Penrose tiling.

16 fficulties with the replication of spherical tiling.

17 eyond the complexity observed in Archimedean tiling.

18 ontact-mediated dendritic self-avoidance and tiling.

19 ) addition site using oligonucleotide arrays tiling 1% of the human genome.

20 By tiling 238 proteins, we find repressors as short as ten

21 petition, we screened heterozygous deletions tiling ~70% of the euchromatic regions and examined thei

22 The 2DP is considered to be a tiling, a mathematical approach that facilitates structu

23 We created a pool of sgRNAs, tiling across all possible target sites of a panel of si

24 y to instead capture candidate CREs, thereby tiling across the targeted regions and markedly increasi

25 Furthermore, an array of sgRNAs tiling along the target locus enables the visualization

26 a combination of metagenomic sequencing and tiling amplicon approaches.

27 n C-type Pcdh isoform is required for axonal tiling and assembly of serotonergic circuitries.

28 We analyse the geometry of the experimental tiling and discuss factors relevant for the stabilizatio

29 n serotonergic neurons disrupts local axonal tiling and global assembly of serotonergic circuitries a

30 Here, using an original hybrid tiling and splice junction microarray that includes alte

31 Theory that combines mathematical tiling and statistical-mechanical models of molecular cr

32 ometry, such as 4(4) and 3(2)434 Archimedean tilings and octagonal quasicrystals.

33 trate a framework for programming random DNA tilings and show how to control the properties of global

34 etween dynamic arrest in this type of random tilings and that of structural glasses.

35 observed in the Fibonacci sequence, Penrose tiling, and quasicrystals is a well-known example.

36 nd cessation of growth, territory formation, tiling, and self-avoidance requires a quantitative compa

37 ur results show that the high-resolution ASO-tiling approach can identify cis-elements that modulate

38 Assembling dCas9 with an array of sgRNAs tiling arbitrary target loci, we were able to visualize

39 The tilings are energetically stabilized with binding energi

40 Archimedean tilings are periodic polygonal tessellations that are cr

41 matin immunoprecipitation followed by genome tiling array analysis (ChIP-chip) as the preferred appro

42 of the miRNA biogenesis pathway followed by tiling array analysis.

43 the false proportion of binding intervals in tiling array analysis.

44 ay donkey (Equus asinus) using a whole-exome tiling array and the array comparative genomic hybridiza

45 Using a genome tiling array approach, we simultaneously measured the ex

46 al. use chromatin immunoprecipitation (ChIP) tiling array assays (ChIP-chip) to show that physical in

47 rformed chromatin immunoprecipitation (ChIP) tiling array assays (ChIP-chip) with a number of circadi

48 By high-resolution tiling array CGH, the smallest common deletion targeted

49 predicted gene models, ESTs and whole-genome tiling array data representing several developmental sta

50 of differentially enriched regions (DERs) in tiling array data.

51 nscripts were larger than predicted from the tiling array data.

52 Genome-wide tiling array experiments are increasingly used for the a

53 We report on chromatin immunoprecipitation-tiling array experiments to globally map binding sites f

54 We report on chromatin immunoprecipitation-tiling array experiments to map binding sites for ABI3 g

55 Methods to improve tiling array expression signals are needed to accurately

56 A custom tiling array for CGH (244,000 probes, 200 bp tiling reso

57 of plant centromeres, we developed a genomic tiling array for four fully sequenced rice (Oryza sativa

58 matin immunoprecipitation followed by genome tiling array hybridization (ChIP-chip) is a powerful app

59 ith high-throughput sequencing (ChIP-seq) or tiling array hybridization (ChIP-chip) is increasingly u

60 raries were hybridized to an oligonucleotide tiling array of the Salmonella genome.

61 rious concentrations were hybridized to four tiling array platforms by eight independent groups.

62 ating publicly available data sets to remove tiling array probe effects.

63 Tiling array studies indicated that fbn-1 mRNA processin

64 lling the false positive rate in genome-wide tiling array studies is very important, because the numb

65 Applying DES to ChIP-chip tiling array study for discovering genome-wide protein-b

66 A genome-wide ChIP-chip tiling array study requires millions of simultaneous com

67 Here we have employed a genomewide tiling array to examine the lytic transcriptome of the K

68 Individual probes on an Affymetrix tiling array usually behave differently.

69 imately 1% of the narrow peaks detected on a tiling array were missed by ChIP-seq.

70 Through the use of a high-density genomic tiling array, we generated DNA and histone methylation p

71 Using a peptide tiling array, we identified novel peptides within the fi

72 nd, we designed and implemented a customized tiling array, which enabled genome-wide, strand-specific

73 lysis using anti-ORF57 antibodies and a KSHV tiling array.

74 ls were identified using a whole genome KSHV tiling array.

75 ancouver (Van), using a new high-density SNP-tiling array.

76 tin Immunoprecipitation (ChIP) followed by a tiling-array analysis.

77 We applied BASIS to a human tiling-array data set and a mouse RNA-seq data set.

78 th methods, hybridized them independently to tiling arrays (1% genome) and compared the data to have

79 immunoprecipitation coupled with Arabidopsis tiling arrays (ChIP-chip) and gene expression studies, w

80 immunoprecipitation in conjunction with DNA tiling arrays (ChIP-chip) revealed that genomic occupanc

81 tion (ChIP) and high-resolution whole-genome tiling arrays (ChIP-chip) that Nhp6A is localized to spe

82 Using custom tiling arrays (DNase-chip), we found unexpectedly many D

83 ults in both a spike-in experiment on ENCODE tiling arrays and an estrogen receptor ChIP-chip experim

84 identified by chromatin immunoprecipitation-tiling arrays and expression arrays.

85 led with recent developments in whole-genome tiling arrays and high-throughput next-generation sequen

86 by comparative hybridization to whole-genome tiling arrays and microarray-assisted bulk segregant ana

87 The inability of tiling arrays and RNA-Seq to count transcripts, rather t

88 with an original array design strategy using tiling arrays and statistical procedures that average in

89 Whole-genome oligonucleotide tiling arrays and tandem mass spectrometry identified tr

90 he genome using high-density oligonucleotide tiling arrays and then extended the TimEX method genome-

91 sing a ChIP-chip approach and the Affymetrix tiling arrays for Arabidopsis thaliana and found that ap

92 chipD has been used successfully to design tiling arrays for bacteria and yeast.

93 omatin immunoprecipitation coupled with KSHV tiling arrays identified the recruitment sites of the co

94 assessed by copy number analysis in 95, and tiling arrays in 65.

95 precipitation assays applied to human genome tiling arrays in conjunction with RNA microarray reveale

96 sing anti-O-GlcNAc ChIP-on-chip whole-genome tiling arrays on wild-type and mutant strains, we detect

97 omatin immunoprecipitation combined with DNA tiling arrays or high-throughput sequencing (ChIP-chip a

98 principle be extended to other exon arrays, tiling arrays or splice junction arrays.

99 sequencing technologies and high-resolution tiling arrays provide an unprecedented opportunity to co

100 ChIP-chip tiling arrays revealed that levels of all degrees of gen

101 We designed high-density tiling arrays spanning all predicted segmental duplicati

102 ulate snoRNA formation, we used high-density tiling arrays to analyze transcripts in paf1Delta cells

103 nic 'dark matter' transcription was found by tiling arrays to be pervasive, it was seen to contribute

104 We used transcriptome sequencing and tiling arrays to compare lncRNA expression in epidermal

105 is (ChIP-chip) experiments with whole-genome tiling arrays to compare Su(Hw), dCTCF, boundary element

106 We used high-density full-genome tiling arrays to create a fine-scale genomic map of copy

107 oprecipitation along with Drosophila genomic tiling arrays to define potential targets of the glial t

108 Here, we use high resolution tiling arrays to examine the contributions of two genera

109 We used tiling arrays to identify highly differentiated regions

110 tical strategy using customized high-density tiling arrays to investigate coordinated patterns of gen

111 matin immunoprecipitation linked to promoter tiling arrays to profile H3 lysine-9 acetylation (H3K9Ac

112 Here, we use whole-genome tiling arrays to show that a wide spectrum of genes and

113 probes on the Affymetrix whole human genome tiling arrays to the entire genome in less than 6 CPU ho

114 ated regions that could be identified on the tiling arrays were associated with genes.

115 Here high-resolution tiling arrays were used to define how perturbed TBP dyna

116 chnical platforms, including strand-specific tiling arrays, Agilent custom expression arrays, strand-

117 Genomic tiling arrays, cDNA sequencing and, more recently, RNA-S

118 5R human adrenocortical cells using promoter tiling arrays, leading to the identification of 445 gene

119 When hybridized to ENCODE tiling arrays, these libraries illuminated 15.3%, 16.4%,

120 q), supplemented with data from high-density tiling arrays, to globally sample transcripts of the fis

121 Utilizing whole-genome tiling arrays, we analyzed the transcription across the

122 Using genome-wide Tiling arrays, we demonstrated that only a small proport

123 ssay, MIRA) in combination with whole-genome tiling arrays, we have characterized by MIRA-chip the en

124 Using tiling arrays, we show that many unspliced yeast pre-mRN

125 Here, using oligonucleotide tiling arrays, we show that, at the anaphase, nearly all

126 DNA oligonucleotide probes for high-density tiling arrays, which can be used in a number of genomic

127 bound RNAs by hybridization to whole-genome tiling arrays.

128 fferent cells and developmental stages using tiling arrays.

129 by hybridization to Arabidopsis whole genome tiling arrays.

130 21 sub-regions, mapped by 3.5 kbp-resolution tiling arrays.

131 ybridizing the RNA molecules to RNA-specific tiling arrays.

132 tremely large number of individual probes on tiling arrays.

133 osomes using high-resolution oligonucleotide tiling arrays.

134 s for evaluating statistical significance in tiling arrays.

135 te and subtropical populations to Affymetrix tiling arrays.

136 stical significance in genome-wide ChIP-chip tiling arrays.

137 r ChIP-chip experiment on whole human genome tiling arrays.

138 na tabacum was determined using whole genome tiling arrays.

139 fication mutants in a Deltarrp6 strain using tiling arrays.

140 pitation and hybridization to human promoter tiling arrays.

141 , using fragments of (3(3).4(2)) Archimedean tiling as the 'wetting layer' between the periodic and a

142 Finally, the design of the quasicrystalline tilings as platelets in nematic liquid crystals is inher

143 plates self-assemble into long-range ordered tilings at the liquid-air interface formed by a hexane w

144 synapse-free axonal segment, delineating the tiling border.

145 achieved in the form of original Penrose P1 tiling by using pentagonal colloidal platelets in layers

146 hromatin affinity precipitation coupled with tiling chip (ChAP-chip) and ChAP followed by quantitativ

147 Tiling chromatin immunoprecipitation study showed that r

148 iant (CNV) prediction pipelines and an exome-tiling chromosomal microarray were also applied to ident

149 Tiling clones are transfected into specific cell types t

150 n this, we propose a measure (the spike time tiling coefficient) to replace the correlation index.

151 novel measure of correlation-the spike time tiling coefficient.

152 We used genome-wide tiling comparative genomic hybridization and single nucl

153 ding the semiregular Archimedean snub square tiling could be fabricated.

154 in agreement with published work, suggesting Tiling CRISPR feasibility.

155 Here, we developed a screening method named "Tiling CRISPR" to identify lncRNA functional domains.

156 Tiling data had higher coverage than shotgun proteomics

157 We also validated HPV-EM using DNA tiling data on an institutional cervical cancer cohort (

158 Here, in a massive reanalysis of CRISPR tiling data using the most comprehensive feature databas

159 e systems is via the propagation-reaction of tiling defects, giving rise to dynamic heterogeneity.

160 correlations punctuated by sparse localized tiling defects.

161 ghput method, cis-regulatory element scan by tiling-deletion and sequencing (CREST-seq), for the unbi

162 for functional correlates by using data from tiling-deletion-based and CRISPR interference screens of

163 We term this approach "binning" or "tiling" depending on the type of m/z window utilized.

164 the form of partial matching rules reducing tiling disorder.

165 ranged in a circuit-specific manner and that tiling does not apply universally across brain regions a

166 1) is a critical determinant of radial glial tiling during neocortical development.

167 on studies with repetitive and nonrepetitive tiling error we show that both algorithms are only remov

168 irst derive an extreme member of this unique tiling family by showing that the "holes" in the optimal

169 at deeply scan across a targeted region in a tiling fashion ("ScanDel").

170 y used for large-area (> 8 cm x 4 cm without tiling) flat panel applications, such as amorphous selen

171 Specifically, we report a random tiling formed in a two-dimensional molecular network of

172 These tilings generally possess 2,068 distinct concave tiling

173 ion, and number per individual, cumulatively tiling >99% of the genome, with an average of 10 indels

174 ieQTLs using reporter assays, CRISPRi, dCas9-tiling guides and Cas9-mediated base-pair editing.

175 This tiling has 694 distinct concave (i.e., nonconvex) repeat

176 Using ChIP and tiling human promoter arrays, we found that activation o

177 om shading and texture flows, as well as the tiling hypothesis of the visual space for different curv

178 tical to Archimedean 4.8(2)-truncated square tiling, i.e. a mosaic of tetragons and octagons.

179 further allow for hierarchical substitution tiling, i.e., hierarchical pentagulation.

180 and the facet is built from MSM0272 hexamers tiling in the outer layer of the shell.

181 sterior parietal cortex coded information by tiling in time neurons that were transiently informative

182 x molecules and may be mapped onto a rhombus tiling in which an ordered array of vertices is embedded

183 This tiling is close to ideal, displaying long-range correlat

184 f a random, entropically stabilized, rhombus tiling is described.

185 entral to our design of the quasicrystalline tilings is the symmetry breaking imposed by the platelet

186 ns across the palmar surface of the hand and tiling it with receptors at their known densities, we re

187 examples of one-, two- and three-dimensional tilings/layerings.

188 performance by using a real-time adjustable tiling light sheet and creating a flexible compromise be

189 Tiling light-sheet selective plane illumination microsco

190 dendritic domains through self-avoidance and tiling mechanisms.

191 By using an antisense oligonucleotide (ASO)-tiling method, we systematically screened the proximal i

192 small effect size is a necessary feature of tiling microarray 'peak' finding algorithms, as cellular

193 atin immunoprecipitation (ChIP) coupled with tiling microarray (chip) experiments have been used in a

194 nt years, from hybridization with spotted or tiling microarray (ChIP-chip), to pair-end tag sequencin

195 ere initially identified using an intergenic tiling microarray and were confirmed by northern blottin

196 High density tiling microarray profiles of these NusA mutants reveale

197 Here we used a genomic tiling microarray to screen transcripts from four chromo

198 opsis thaliana using ChIP and a high-density tiling microarray, and integrated this with previous map

199 ChIP) analysis in Arabidopsis using a genome tiling microarray.

200 ,257 of which were further validated using a tiling microarray.

201 idized to a high-density DNA oligonucleotide tiling microarray.

202 script (ALT) lncRNA was discovered by genome-tiling microarray.

203 rphism detection accuracy of a high-density 'tiling' microarray with 2.56 million probes by comparing

204 atin immunoprecipitation (ChIP) coupled with tiling microarrays (ChIP-chip) to determine the genomic

205 d chromatin immunoprecipitation coupled with tiling microarrays (ChIP-chip) to determine the genomic

206 We used high-resolution tiling microarrays and 5' RNA sequencing to identify tra

207 Here we used RNA-Seq, tiling microarrays and cDNA sequencing to explore the tr

208 genomic DNA from each strain to whole-genome tiling microarrays and detected 1.89 million single nucl

209 Whole-genome tiling microarrays can be employed for a myriad of purpo

210 ion signals detected by high-density genomic tiling microarrays contain comprehensive transcriptomic

211 Tiling microarrays have proven to be a valuable tool for

212 The advent of exon and tiling microarrays means that researchers now have the c

213 eaf tissue are hybridized to oligonucleotide tiling microarrays of the plastid ORFeome and report the

214 d by chromatin immunoprecipitation to genome tiling microarrays to construct a genome-wide map of BEA

215 d the protocol together with AGRONOMICS1 DNA tiling microarrays to establish genome-wide DNase I sens

216 parasitism may be derived through the use of tiling microarrays to establish high resolution, genome-

217 Here, we report the use of tiling microarrays to map 1358 S/MARs on Arabidopsis tha

218 Using tiling microarrays to map 5hmC levels in DNA from normal

219 ts were analyzed by genome-wide high-density tiling microarrays, DNA sequencing, and copy number vari

220 sive evaluation of HOX gene expression using tiling microarrays, with validation, showed that distant

221 d accumulated unspliced pre-mRNAs by genomic tiling microarrays.

222 on coupled with high-resolution whole genome-tiling microarrays.

223 ne edge rather than covering, suggesting the tiling model is better than the covering model for struc

224 show that some of the previously identified tiling mutants fail to confine dendrites in a 2D plane.

225 identify Memo1 as a mediator of RGC scaffold tiling, necessary to generate and organize neurons into

226 polymers-single-layered polymers that form a tiling network in exactly two dimensions-have potential

227 However, although random tiling networks are studied increasingly, their degree o

228 e two key amino acids, Lys-26 and Arg-79, on tiling, not only in the crystal lattice but also in the

229 These findings thus reveal homotypic tiling of LTMR subtype axonal projections in hairy skin

230 of process nodes on opposite sides, compact tiling of members of molecular complexes and extensively

231 re, the authors demonstrate that dodecagonal tiling of mesoporous silica nanoparticles occurs via irr

232 age in homotypic interactions that result in tiling of neighboring cells before the establishment of

233 Sharpr-MPRA combines dense tiling of overlapping MPRA constructs with a probabilist

234 rahertz quantum-cascade laser with a Penrose tiling of pentagonal rotational symmetry, reaching 0.1-0

235 lustering, as we found evidence of dendritic tiling of PN dendrites.

236 tal is broken in sublayers, forming a random tiling of rectangles, large triangles and small triangle

237 nstance of pentagonal, two-dimensional Cairo-tiling of silicate tetrahedra in one of the new zeolite

238 oped for bootstrapping of time series and re-tiling of spatial data, to random networks.

239 The tiling of surfaces has long attracted the attention of s

240 rison and quantitative analysis suggest that tiling of the different dendritic subtrees of the same n

241 This ensures tiling of the lamina neuropil through heterotypic intera

242 This developmental tiling of transient neurites correlates with the emergen

243 f a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of

244 organizational feature of astrocytes is the "tiling" of the brain with non-overlapping territories.

245 Here we use tiling oligonucleotide microarrays, comprising 42 millio

246 Isolation by RNA Purification (ChIRP), where tiling oligonucleotides retrieve specific lncRNAs with b

247 ing cells, showing no evidence for dendritic tiling or inter-digitation consistent with homotypic rep

248 bridize zebra finch genomic DNA to a chicken tiling path microarray and identify CNVs in the zebra fi

249 A minimum tiling path of 66,772 minimally overlapping clones was d

250 quenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs.

251 ustom-designed genomic array consisting of a tiling path of BAC clones.

252 ence and fingerprints to determine a minimal tiling path of clones.

253 The MTP (minimal tiling path) module uses sequence and fingerprints to de

254 s, such as in this case gene-bearing minimum-tiling-path BAC clones.

255 Duroc genomic DNA on a pig X-chromosome BAC tiling-path microarray.

256 in their origin using a custom designed 4-Mb tiling-path oligonucleotide array CGH assay.

257 method is used to identify minimum amplicon tiling paths.

258 ion, ChP macrophages abandoned their regular tiling pattern and relocated to the ChP-free margin wher

259 The conservation of this tiling pattern in HER3 and HER4, which is the closest ev

260 We achieved two novel Archimedean tiling patterns, (4.8.8) and (3.6.3.6), and one pattern

261 es), can form honeycombs with highly complex tiling patterns, with cells of up to five different comp

262 d the densest known packings of the four non-tiling Platonic solids (the tetrahedron, octahedron, dod

263 cking, the densest packings of the other non-tiling Platonic solids that we obtain are their previous

264 one bipolar cells reveals that the dendritic tiling present in maturity is achieved secondarily, afte

265 As part of the tiling process, primer pairs are computationally screene

266 R)(55) exterior cage resembling a 3D Penrose tiling protects the M(54) decahedral kernel.

267 a continuous variety of length scales of the tiling, ranging over three orders of magnitude in the ty

268 DA9 motoneurons, we found that the synaptic tiling requires the PlexinA4 homolog, PLX-1, and two tra

269 performance characteristics that varied with tiling resolution and the number of replicates, which ha

270 tiling array for CGH (244,000 probes, 200 bp tiling resolution) was created to identify small regions

271 ing of RGC basal processes and disrupted RGC tiling, resulting in aberrant radial unit assembly and n

272 The Cu-SR Penrose tiling retains the M(54) kernel's high symmetry (D(5h)).

273 vely reduces dendritic crossing and restores tiling, revealing an additional mechanism for tiling.

274 Applied to a published CRISPR tiling screen dataset, ProTiler identifies 175 CKHS regi

275 oughput CRISPR-Cas9 knockout screens using a tiling-sgRNA design permit in situ evaluation of protein

276 AB(6) phase and the (3(2).4.3.4) Archimedean tiling shows the promise of further exploration on the s

277 To amplify breakpoints with PCR, primers tiling specified target regions are carefully selected w

278 of NUP188 also resulted in aberrant dendrite tiling, suggesting a potential role of NUP188 in dendrit

279 that are viewed as a homogeneous population tiling the entire central nervous system (CNS).

280 resent in every body segment, have dendrites tiling the larval body wall nearly completely without re

281 By tiling the mouse thalamus with 254 overlapping injection

282 ded modulation of gene expression enabled by tiling the promoter regions of all 969 genes that compri

283 pe local detectors that had receptive fields tiling the stimulus and were tuned to the two directions

284 cell types formed regular mosaics uniformly tiling the visual scene.

285 By tiling these probes along the length of an mRNA target,

286 rsely distributed to permit complete retinal tiling, they lack a key feature of true ganglion cell ty

287 ents with complex particle handling modes by tiling this core element using multiple transformation o

288 ltonian complexity techniques with aperiodic tilings, to construct a Hamiltonian whose ground state e

289 ed the molecular basis of self-avoidance and tiling, two fundamental principles required for the form

290 of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six s

291 growth trajectories beginning with a single tiling unit.

292 athways of quasicrystalline materials, where tiling units arrange with local but no long-range order,

293 ngs generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric.

294 ctahedra tiling, which only has two distinct tiling units.

295 ation and repression profiling with reporter tiling using MPRA (Sharpr-MPRA), that allows high-resolu

296 It was believed that such a tiling, which is the Delaunay tessellation of the face-c

297 lly richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units.

298 ome-wide homology through single-base-offset tiling windows of 100 continual nucleotide bases.

299 spatial periodicity similar to a triangular tiling with a corresponding well-defined hexagonal struc

300 s is established by mapping the problem into tiling with hexagonal tiles.

301 f two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and tw