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1 e catalytic activity, which is predominantly trans acting.
2 aracterization, and application of versatile trans-acting 2'-5' adenylyl transferase ribozymes for co
3 t and remain unmethylated in the presence of trans-acting 24-nt siRNAs can nevertheless acquire methy
4 orescence studies suggest that both cis- and trans-acting 3D molecules localize to the same cellular
6 px RNA activates Xist expression through its trans-acting ability to evict CTCF from Xist promoter.
8 slation could be specifically enhanced using trans-acting agents that counter the function of negativ
9 ticularly complex, consisting of cis-acting, trans-acting and, surprisingly, compensatory cis-trans e
10 e side-chain conformation of residue R359, a trans-acting arginine-finger residue essential for ATP h
11 ncluding ClpB/Hsp104, possess a pair of such trans-acting arginines in the N-terminal nucleotide bind
14 g of somatic genes is attributable to either trans-acting cellular environment or cis-acting chromati
16 ved that cis-regulatory changes often oppose trans-acting changes affecting the same genes, suggestin
17 her determined the contributions of cis- and trans-acting changes in splicing regulatory networks by
20 length elements, able to encode the cis and trans acting components of the retrotransposition machin
25 e rebuilt structures to a higher resolution, trans-acting deoxy-inhibited structure of the ribozyme,
26 what we believe to be a novel in cis- and in trans-acting DNA and lncRNA regulatory feedback element
27 or the presence of histone modifications and trans-acting DNA binding proteins using chromatin immuno
29 tion, or stability of co-transcribed RNA, or trans-acting, e.g. small regulatory RNAs, which target s
32 he terminal repeat (TR) element and requires trans-acting elements, both viral and cellular, such as
33 ty is likely due to changes in both cis- and trans-acting elements, hinting at widespread and frequen
35 ent an important class of sequence-specific, trans-acting endogenous small RNA molecules that modulat
38 mplex process reliant on the coordination of trans-acting enzymes to produce functional ribosomal sub
40 region, transcript/exon-level and cis versus trans-acting eQTL, across 10 regions of the human brain.
41 large number of infection-specific cis- and trans-acting eQTLs in the DGRP, including one common non
42 regions, as well as being cis-acting; (iii) trans-acting eQTLs tend to have larger effects on expres
44 ignment indicates a general applicability to trans-acting ERs of fungal PKSs, as well as their potent
48 esponse can be explained by a single cis- or trans-acting expression quantitative trait locus (eQTL).
49 identify and describe a role for FANCD2 as a trans-acting facilitator of CFS replication, in the abse
50 gs are consistent with NCL acting as an IRES trans-acting factor (ITAF) for ORF2 translation and henc
51 mportant internal ribosome entry site (IRES) trans-acting factor (ITAF) for poliovirus IRES-mediated
52 ion-dependent CNSHA caused by mutations in a trans-acting factor (Kruppel-like factor 1) and reveal a
55 ow that Zar2 contains a zinc finger and is a trans-acting factor for the TCS in maternal mRNAs in imm
57 al mediator of this transport process is the trans-acting factor heterogeneous nuclear ribonucleoprot
59 e provide evidence that the abundance of the trans-acting factor that binds the LdNT3 stem-loop in vi
60 says, we discovered that Sam68 is a possible trans-acting factor that binds to this region and regula
61 nizes the glucocorticoid receptor as a novel trans-acting factor that regulates CFTR expression in vi
62 nscripts, suggesting that PCBP1 can act as a trans-acting factor to stabilize sortilin transcripts.
63 ivery of the corresponding cognate synthetic trans-acting factor ZF6-DB without the intrinsic transcr
64 ng the interaction of a requisite c-MYC IRES trans-acting factor, heterogeneous nuclear ribonucleopro
65 gent cadicivirus IRESs require the same IRES trans-acting factor, poly(C)-binding protein 2 (PCBP2).
66 ne if Spn1 causes a fitness defect through a trans-acting factor, we constructed an Spn1(+) mutant th
67 f libraries to provide a prediction of which trans -acting factors binding sites are disrupted/create
69 d causes defects in the recycling of several trans-acting factors (hEnp1, hRio2, hLtv1, hDim2/PNO1, a
70 nitiation on Type 1 IRESs also requires IRES trans-acting factors (ITAFs), and several candidates hav
75 sis requires the action of approximately 200 trans-acting factors and the incorporation of 79 ribosom
76 s how cis-acting sequence elements influence trans-acting factors and the local chromatin environment
77 recent strategies aimed at uncovering novel trans-acting factors and their functional role in the NM
80 However, RNA cis-regulatory elements and trans-acting factors contributing to HPV18 alternative R
83 ents, raising the possibility that undefined trans-acting factors governing mRNA stability and transl
87 Our data reveal distinct roles of cis- and trans-acting factors in the rotational positioning of nu
91 ribosomal particles have identified numerous trans-acting factors involved in this process, many prot
92 The structure indicates that the binding of trans-acting factors is required to remodel the tertiary
93 s local activity of super-enhancers and that trans-acting factors modulate DNA methylation profiles w
95 fied hnRNP A1 (A1) and RPS25 as IRES-binding trans-acting factors required for ER stress-activated ac
96 been well studied, little is known about the trans-acting factors responsible for developmental contr
97 this study, we sought to define the cis- and trans-acting factors responsible for initiation and main
100 e aim of this study was to discover cis- and trans-acting factors significantly affecting mRNA expres
101 -species complementation, demonstrating that trans-acting factors that are background-dependent contr
102 forward-genetic screens aimed at identifying trans-acting factors that are required for expression of
103 esults advance our knowledge of the cis- and trans-acting factors that are required for transcription
104 fy cis-regulatory elements and corresponding trans-acting factors that contribute to EC identity and
105 an intracellular network of nucleus-encoded, trans-acting factors that control almost all aspects of
106 ack to alterations of cis-acting elements or trans-acting factors that control the establishment, mai
108 n, including the cis-regulatory elements and trans-acting factors that determine general de novo m(6)
110 which indicates the presence of variation in trans-acting factors that influence recombination genome
111 of the PAR and identify controlling cis- and trans-acting factors that make the PAR the hottest segme
112 er, the array of cis-regulatory elements and trans-acting factors that mediate these transcriptional
115 eukaryotes, these events are facilitated by trans-acting factors that propel ribosome maturation fro
116 abidopsis relies in large part on binding of trans-acting factors to cis-localized DNA sequence motif
117 nd complex process that requires hundreds of trans-acting factors to dynamically build the highly-org
118 throughput system for systematically linking trans-acting factors to endogenous RNA regulatory events
119 ription is orchestrated by multiple cis- and trans-acting factors to ensure appropriate expression of
120 llows measurement of the ability of cis- and trans-acting factors to promote the export and translati
121 re well studied, but how the interactions of trans-acting factors with cis-regulatory modules (CRMs)
122 ry elements, e.g., promoters, enhancers, and trans-acting factors, are essential for the proper contr
123 ssection of both cis-regulatory elements and trans-acting factors, as well as the interpretation of v
124 ass the intricate interplay between cis- and trans-acting factors, chromatin, and the core transcript
126 on are considered an important complement to trans-acting factors, histone modifications and non-codi
128 o well-characterized binding sites for known trans-acting factors, including hepatocyte nuclear facto
129 of RNA are regulated by interactions between trans-acting factors, such as microRNA and RNA-binding p
130 In this study, we identified two p53 IRES trans-acting factors, translational control protein 80 (
131 Sec incorporation requires both cis- and trans-acting factors, which are known to be sufficient f
132 e codes governing splicing and their cognate trans-acting factors, which have illuminated important c
133 that these "seed" nucleosomes--together with trans-acting factors--may facilitate the establishment o
142 l regulation in eukaryotes requires cis- and trans-acting features and factors including RNA secondar
143 ies of a host microRNA, and induction of the trans-acting function of phased secondary small interfer
144 me has allowed evolution of separate cis and trans acting functions, providing selective pressure to
146 es nucleosome occupancy maps for discovering trans-acting general regulatory factor (GRF) binding sit
147 panel of human HapMap cell lines to identify trans-acting genes whose expression and/or single-nucleo
152 although Arg-349 of sensor II, positioned by trans-acting Glu-286 and Tyr-290, acts as a key residue
153 d to open" movement of Walker A, assisted by trans-acting "Glu switch" Glu-286, facilitates ATP bindi
155 w tightly an incoming subunit will be bound (trans-acting GTP), but most current models do not incorp
156 omplex called Cascade(3,4), which recruits a trans-acting helicase-nuclease, Cas3, for target degrada
158 t start codon selection is regulated by many trans-acting initiation factors as well as sequence/stru
159 NA sequencing to identify 4 riboswitches, 13 trans-acting (intergenic), and 22 cis-acting (antisense)
160 tic evidence that the Firre locus produces a trans-acting lncRNA that has physiological roles in hema
161 -function relationship, determining cis- and trans-acting lncRNAs in vivo, and generating new develop
163 genetically divergent strains, we mapped 86 trans-acting loci affecting the expression of ten genes.
165 lity and disruption of MSCI and suggest that trans-acting loci on the X are important for the transcr
166 s and mapped hundreds of underlying cis- and trans-acting loci throughout the genome that regulate hi
167 revealed that this effect was largely due to trans-acting loci, many of which showed evidence of loca
169 eral muscular dystrophy type 2 (FSHD2) via a trans-acting loss-of-function epigenetic mechanism.
170 of Aire(+) mTEC, our data show how cis- and trans-acting mechanisms are able to control the thymus m
171 by modification of deeply conserved cis- and trans-acting mechanisms of Hox regulation in gnathostome
175 owever, modifications of individual cis- and trans-acting modules can be molded by natural selection
182 numerous putative regulatory RNAs, including trans-acting non-coding RNAs and anti-sense transcripts.
186 y complex) to bind foreign DNA and recruit a trans-acting nuclease (i.e., Cas2/3) for target degradat
188 that binds foreign DNA and recruits Cas3, a trans-acting nuclease helicase for target degradation.
189 mbe and S. octosporus, and binding sites for trans-acting nucleosome-excluding proteins functioning i
191 miRNA target mimics and lncRNAs that produce trans-acting or phased small-interfering RNA (tasiRNA/ph
192 lymorphisms within GALNT13 (P < 0.005), four trans-acting (P < 2.1 x 10(-7)) and one cis-acting (P =
193 within their native context and as separate trans-acting peptides, confirmed that the aromatic resid
194 CH protein, TbZFP3, has been identified as a trans-acting post-transcriptional regulator of Procyclin
195 h -2 and -1 PRF and in its requirement for a trans-acting protein factor, the viral replicase subunit
198 ce within the region prevents binding of the trans-acting protein(s), increasing promoter activity 7-
199 plex control of atxA transcription, only one trans-acting protein, the transition state regulator Abr
201 e, we found that mutations in genes encoding trans-acting proteins lead to more introns with increase
202 , we identified both cis-acting elements and trans-acting proteins that are required for HBoV1 DNA re
203 etween enhancer cis-acting DNA sequences and trans-acting proteins that recognize these DNA elements
204 tic screening approach in yeast, we identify trans-acting proteins that regulate the accumulation of
208 We observed a significant enrichment of trans-acting rare nonsynonymous secondary variants in pa
210 -ASM is highly tissue specific; an important trans-acting regulator of genomic imprinting is regulate
215 tive contributions and interplay of cis- and trans-acting regulatory factors to this evolutionary pro
217 ing, through the production of plasmid-coded trans-acting replication inhibitors, and obedience, expr
218 d by a weak cis-acting promoter and putative trans-acting repressor(s) present in A. arenosa and allo
219 iation and somatically acquired mutations in trans-acting repressors contribute to DUX4 re-expression
222 doCbl-binding riboswitch is part of a small, trans-acting RNA, EutX, which additionally contains a du
223 is elements contained within the message and trans-acting RNA-binding proteins (e.g., She2, Puf2).
225 ddress the question whether fragmentation of trans-acting RNAs is accompanied by the formation of a c
226 messenger in turn targets the CARF domain of trans-acting RNase Csm6, triggering its HEPN domain-base
227 ated by sigB and cshA and plays an important trans-acting role in modulating the transcription and en
229 ionarily conserved microRNA that targets the Trans-Acting Short Interference RNA3 (TAS3) transcript.
230 eaflet1, is required for the biogenesis of a trans-acting short interfering RNA (ta-siRNA) to negativ
231 h as Argonaute7, a specific component of the trans-acting short interfering RNA3 pathway, an RNA-depe
233 nse and in development via the biogenesis of trans-acting short-interfering RNAs (siRNAs) termed tasi
234 w how evolutionary changes in cis as well as trans acting signals have played a fundamental role in d
235 R828 in Arabidopsis triggers the cleavage of Trans-Acting SiRNA Gene 4 (TAS4) transcripts and product
237 y spaced lateral organs, suggesting that the trans-acting siRNA3 (TAS3) pathway negatively regulates
238 is targeted by miR828 and miR858, generating trans-acting siRNAs (ta-siRNAs) in the TAS4 family.
239 22 novel miRNAs and 6 genomic loci producing trans-acting siRNAs (ta-siRNAs) including TAS3a to TAS3e
240 ssed highly abundant but less conserved TAS3 trans-acting siRNAs (tasiRNAs) in addition to tasiR-ARFs
243 licing is required for biogenesis of phased, trans-acting siRNAs (tasiRNAs), whose cleaved precursor
246 captures microRNA390, contributing to reduce trans acting small interference Auxin Response Factor pr
247 onstrated that a short variant of the lncRNA Trans-acting small interference RNA3 (TAS3) increased it
248 3 by ARGONAUTE7 results in the production of trans-acting small interference RNAs, which target mRNAs
249 uced accumulation of miR390, an initiator of trans-acting small interfering RNA (ta-siRNA) formation,
250 the shared repression of ARF3 by the AS and trans-acting small interfering RNA (ta-siRNA) pathways i
251 by promoting the biogenesis of TAS3-derived trans-acting small interfering RNA (ta-siRNA), which rep
252 wo TAS gene families with similar but unique trans-acting small interfering RNA (tasiRNA) biogenesis
254 re, we demonstrate that the microRNA (miRNA)-trans-acting small interfering RNA gene (TAS)-pentatrico
256 -like protein required for the biogenesis of trans-acting small interfering RNA, which regulates the
257 Artificial microRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) are u
258 of artificial miRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) for e
261 atens miR156 also influences accumulation of trans-acting small interfering RNAs (tasiRNAs) dependent
263 sses of sRNAs such as microRNAs (miRNAs) and trans-acting small interfering RNAs have been shown to b
266 imary function is to promote pairing between trans-acting small non-coding RNAs (sRNAs) and their tar
267 tRNA fragmentation can coordinately generate trans-acting small RNAs and functionally deplete a tRNA.
268 d cognate target messenger RNAs and specific trans-acting small RNAs, such as the posttranscriptional
270 NDOR, a method that represents both cis- and trans-acting SNPs and the genes with which they are asso
272 at KDM4B can function as a signal responsive trans-acting splicing factor and scaffold that recruits
274 ilencers that regulate exon 13 inclusion via trans-acting splicing factors like PTBP1 and TIAL1.
279 We show that Bacillus subtilis RoxS, a major trans-acting sRNA shared with Staphylococus aureus, prev
282 Q/FinO domain-containing proteins can assist trans-acting sRNAs and that this class of RNA chaperones
286 -term ribosome deficits through compensatory trans-acting suppressors, cells are penalized in the lon
287 estion is whether proteins might function as trans-acting switches to turn frameshifting on or off in
289 terminator read-through assay, we identified trans-acting Terminator Override (TOV) genes that operat
290 moter deletion/substitutions, mutants in the trans-acting transcription factors and their upstream pr
292 us demonstrate that our approach can uncover trans-acting transcriptional control circuits that affec
293 nd proteomic studies, we show that FthB is a trans-acting transfer RNA (tRNA) editing protein, which
295 ctivity and upon heptamerization, packing of trans-acting Tyr(290) against cis-acting Arg(349) compel
296 ple, in response to a virus-like stimulus, a trans-acting variant responds as an activator of the ant
297 additive inheritance, while those linked to trans-acting variants are most often dominantly inherite
299 ependent RNA polymerase (L protein), the two trans-acting viral factors required for both virus RNA r
300 ge-scale RNA interference screen to identify trans-acting XCI factors (XCIFs) that comprise regulator