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1 rgical procedures were directly observed and transcribed.
2 Interviews were audio recorded and transcribed.
3 All interviews were audio-recorded and transcribed.
4 depending on whether they are independently transcribed.
5 l divisions in the same cells in which it is transcribed.
6 al regions, centromeres are instead actively transcribed.
7 ted binding sites to determine how a gene is transcribed?
8 es with two priming techniques to faithfully transcribe 16S rRNA and amoA transcripts from marine sed
11 posi's sarcoma-associated herpesvirus (KSHV) transcribes a long noncoding polyadenylated nuclear (PAN
13 itochondrial genes in Lophophytum are highly transcribed, accurately spliced, and efficiently RNA edi
14 These results indicate that mlonRNAs are transcribed across the fbp1 promoter as a short-range in
15 with a high-throughput enhancer screen (self-transcribing active regulatory region sequencing (STARR-
17 F-associated loci for RE activity using self-transcribing active regulatory region sequencing and a r
18 ubsequently, using an adaptation of the self-transcribing active regulatory region sequencing approac
20 rough direct binding of TET3 to the paternal transcribed allele of the imprinted gene Small nuclear r
21 ber sensory neurons; report that muscle mSCs transcribe an array of genes encoding neuropeptides, neu
24 ally in the case of AT-rich DNA sequences-be transcribed and initiate MAVS-dependent RNA sensing and
25 d around transcription start sites of highly transcribed and paused genes and that Pol II promoter-pr
26 hat much of the non-protein-coding genome is transcribed and plays a diverse functional role in funda
27 hod for massively parallel analysis of newly transcribed and pre-existing mRNAs from the same cell.
29 negative-sense segmented RNA genome that is transcribed and replicated by the viral heterotrimeric R
31 es reveal that the majority of the genome is transcribed and that there are more long non-coding RNAs
33 scanning," wherein the majority of genes are transcribed and therefore subject to transcription-coupl
34 olymerase (FluPol), which is responsible for transcribing and replicating the negative-sense viral RN
37 ng to determine an in-cell architecture of a transcribing and translating expressome at subnanometer
38 ll suspensions, cells isolated, mRNA reverse transcribed, and barcoded before high-throughput sequenc
39 on gene is evolutionarily conserved, broadly transcribed, and capable of expressing protein.IMPORTANC
40 find that ~15% of the mouse pseudogenes are transcribed, and that highly transcribed parent genes te
42 rs, while genes within the latter are likely transcribed as a consequence of their proximity to upstr
45 We further identified a long-non coding RNA transcribed at CHPT1 enhancer (also known as enhancer RN
46 s CRISPR technology to generate up to 44,000 transcribed barcodes in an inducible fashion at any poin
47 er RNAs (eRNA) are unstable non-coding RNAs, transcribed bidirectionally from active regulatory seque
48 NA) molecules that were successfully reverse transcribed but to which a second oligonucleotide handle
56 and of interspersed genes, and all genes are transcribed by the same DNA strand, suggesting that part
58 n improved transfection protocol of in vitro transcribed Cas9 mRNA and crRNA:tracrRNA duplex that can
60 ct genomic locations, which include actively transcribed chromatin and heterochromatin, and cause wid
61 y the distribution of TFIIH and Spt4/Spt5 in transcribed chromatin and Rad26 mainly functions downstr
64 M structures of E. coli sigma(28) -dependent transcribing complexes on a complete flagella-specific p
66 hen plasmid target sequences are efficiently transcribed, Csm6 is dispensable and DNA degradation by
67 al to the gene (cis-regulatory factors), and transcribed distal genes (trans-regulatory factors).
68 lysis was performed on lncRNA-CCL2, which is transcribed divergently to the gene, CCL2, encoding a pr
72 erminate (readthrough genes), are aberrantly transcribed due to upstream termination failure (read-in
78 although GAMYB-like genes are constitutively transcribed during vegetative growth, their effects are
84 super-enhancers, including bi-directionally transcribed enhancers, which are often restricted to imm
86 f the window of time over which each nucleus transcribes even-skipped plays a critical role in stripe
88 multi-exonic non-coding RNA (mencRNA) genes transcribed from 1.5-Mb intervals surrounding 139 breast
89 ir own promoter (bona fide) and TEs that are transcribed from a neighboring gene promoter such as wit
91 timulated genes (ISGs) on hepadnaviral mRNAs transcribed from cccDNA, we found that downregulating th
92 e miRNAs are antisense to each other and are transcribed from divergent noncoding RNAs in the latency
93 17beta-estradiol via estrogen-receptor (ER, transcribed from ESR1) dependent mechanisms, but is not
95 n of novel functions the pools are typically transcribed from random-sequence DNA templates, yielding
96 the presence of an endogenous antisense RNA, transcribed from the 3'-end of the human CD39/ENTPD1 gen
99 own cartilage associated microRNAs and those transcribed from the Hox complexes, and the downregulati
101 , which overlap protein coding genes and are transcribed from the opposite DNA strand, constitute an
102 A 1 (INCR1) as a long noncoding RNA (lncRNA) transcribed from the PD-L1 locus and show that INCR1 con
103 he choline kinase beta (CHKB) gene, which is transcribed from the same DNA strand and terminates just
108 encoded by Set1/COMPASS on certain actively transcribed genes and that this protective role is most
110 cp2-L10a-Egfp) TRAP mice to profile actively transcribed genes in developing postnatal mouse PCs and
112 r RNA (tRNA) genes are among the most highly transcribed genes in the genome owing to their central r
113 position occurs in a directed fashion on all transcribed genes regardless of their overall transcript
114 on of histone H3K4 is a hallmark of actively transcribed genes that depends on mono-ubiquitination of
115 , EloA localizes to both thousands of Pol II transcribed genes with preference for transcription star
116 P1 level, more abundant strand-breaks in the transcribed genes, and degradation of RNAP II relative t
117 ly decreased global transcription, repair of transcribed genes, and error-free double-strand break re
119 3 up-regulated and 148 down-regulated or not transcribed genes, were simultaneously impacted by intro
120 Y of D. miranda still contains many actively transcribed genes, which compromise the formation of sil
127 enerated by SaCas9 nickase to mimic actively transcribed genomic loci that are more susceptible to cy
130 RNA cleavage factor components from actively transcribing genomic loci, providing a mechanism for hyp
132 elements in myeloid malignancies by mapping transcribed HERV genes and generating a library of 1169
133 ion, whereas homozygous animals consistently transcribed higher levels of KLRA, regardless of the all
135 elicase directly in front of the replicating-transcribing holo-RdRp, constraining models for nsp13 fu
137 1(lo) NKT cells were found to constitutively transcribe IL-10 mRNA and, accordingly, produced IL-10 u
138 ch continued transcription would necessarily transcribe immediately adjacent genes and result in conf
140 nting evidence indicates that TEs are highly transcribed in early embryo development and contribute t
142 coding genes, many lncRNAs were specifically transcribed in one ecotype and/or differentially express
143 hat the HoxC gene cluster was co-opted to be transcribed in the distal limb ectoderm, where it is act
145 eats are normally silent but can be actively transcribed in tumor cells, where increased HSATII copy
147 ter enables repeatable information access by transcribing information from DNA without destroying it.
148 st of Group IV sigmas, numbers of genes they transcribe, insight into the diverse suite of processes
152 The telomere downstream of the active VSG is transcribed into a long-noncoding RNA (TERRA), which for
153 ned for purity and quality, and then reverse transcribed into cDNA before being subjected to real-tim
154 ngle-cell RNA-seq (sequencing of RNA reverse transcribed into cDNA) and found that neurogenesis and h
155 unnatural nucleotides is efficiently reverse transcribed into cDNA, and we develop an assay to measur
157 A was extracted from all samples and reverse transcribed into complementary DNA; V1-V2 regions of 16S
158 ext, during the targeting phase, spacers are transcribed into CRISPR RNAs (crRNAs) that guide CRISPR-
159 uman immunodeficiency virus (HIV) is reverse-transcribed into DNA and integrated into the host genome
161 s of regulatory elements functions only when transcribed into RNA, as they serve as the binding sites
162 al DNA sequences known as spacers, which are transcribed into short RNA guides to specify the targets
163 vader, integrated into the CRISPR locus, and transcribed into short RNAs that direct RNA-guided Cas n
164 ncode a multifunctional protein that reverse transcribes its mRNA into DNA at the site of insertion b
165 half of the viral life cycle, HIV-1 reverse transcribes its RNA genome and integrates the double-str
166 njectable nanocarrier that delivers in vitro-transcribed (IVT) CAR or TCR mRNA for transiently reprog
167 e stability required of TECs to processively transcribe large genomic regions necessitates robust mec
169 activity depends on ComW, as DeltacomW cells transcribe late genes and transform at levels 10- and 10
171 After initiation, RNAPII enzymes pause after transcribing less than 100 bases; precisely how RNAPII p
174 er in yeast to systematically decode, at one transcribed locus, the chromatin binding changes of hund
175 hed relative to other classes for active and transcribed marks, that TEs encompass a higher proportio
176 ide also prevents translation of these newly transcribed messages, leading to an apparent drop in TE
178 ast, makes use of poly-dT primers to reverse transcribe mRNA, followed by linear amplification throug
179 Therapeutic strategies based on in vitro-transcribed mRNA (IVT) are attractive because they avoid
184 thereby delivering the m(6)A MTC to actively transcribed nascent RNAs to deposit m(6)A co-transcripti
185 which were robust and associated with long, transcribed neural genes that were also robust RDC-genes
186 ve proviruses are not silent, are capable of transcribing novel unspliced forms of HIV-RNA transcript
190 early half of the human genome and are often transcribed or exhibit cis-regulatory properties with un
191 pseudogenes are transcribed, and that highly transcribed parent genes tend to give rise to many proce
193 nucleic acid was extracted from DBS, reverse transcribed, PCR amplified, and analyzed by population-b
197 are arranged in directional arrays that are transcribed polycistronically, and individual mRNAs are
198 ces and extrinsic obstacles, including other transcribing polymerases, the replication machinery and
200 viral late transcripts that are prematurely transcribed, presumably due to cryptic transcription ear
202 re length of the chromosome from which it is transcribed, recruiting factors to modify underlying chr
203 ce and expression conservation of intergenic transcribed regions (ITRs) in four Poaceae species.
205 suggest that Elongin A localizes to actively transcribed regions and potential enhancers, and the lev
208 d redistribution of elongating RNAPII within transcribed regions toward the transcriptional start sit
209 s and recruits BRD2 to the rDNA promoter and transcribed regions via association with upstream bindin
210 der replication stress, especially in highly transcribed regions where the presence of H3K4me is high
212 plication forks through DNA damage, actively transcribed regions, structured DNA and compact chromati
213 tative trait loci for annotated genes, novel transcribed regions, transposable elements, and microbia
214 e conclude that EloA broadly associates with transcribed regions, tunes RNA Pol II transcription leve
218 how that total RNA is sufficient to identify transcribed regulatory elements and capture the dynamics
219 veals that cis effects are widespread across transcribed regulatory elements, and the strongest cis e
221 nts (SINEs) are RNA polymerase III (RNAPIII)-transcribed, retrotransposable noncoding RNA (ncRNA) ele
223 lture, 16S bacterial PCR and/or 28S-internal transcribed ribosomal gene spacer (28S-ITS) fungal PCR.
226 rexpressed BC200 by transfection of in vitro transcribed RNA and transient expression from transfecte
228 ingly, Mex67 is essential to stabilize newly transcribed RNA before Xpo1-mediated nuclear export.
229 Long noncoding RNAs (lncRNAs) are a class of transcribed RNA molecules greater than 200 nucleotides i
230 of in vitrotranscription (SPRINT), in vitro transcribed RNA sequence-specifically triggers the RNase
233 on incorporates a feedback mechanism whereby transcribed RNAs initially stimulate but then ultimately
234 quintessential feature of RNA polymerase II-transcribed RNAs, and a textbook aspect of co-transcript
238 lls, splicing occurs after RNA polymerase II transcribes several kilobases of pre-mRNA, suggesting th
241 maturation of all regular RNA polymerase II transcribed snRNAs of the major and minor spliceosomes b
243 of by-products derived from the 5'-external transcribed spacer (ETS) of 45S pre-rRNA, as MTR4 does.
245 ofile, and Sanger sequencing of the internal transcribed spacer (ITS) and D1/D2 regions of the riboso
246 ing tool with great accuracy, while internal transcribed spacer (ITS) and D1/D2 sequencing were succe
247 Fungi were isolated, and a fungal internal transcribed spacer (ITS) clone library survey was perfor
250 ungal barcode-the nuclear ribosomal internal transcribed spacer (ITS) region-and offers all ~1 000 00
253 this cross-sectional study, we use internal transcribed spacer 1 amplicon sequencing to evaluate the
254 olic controls using fungal-specific internal transcribed spacer amplicon sequencing of fecal samples.
257 6S amplicon sequencing) and fungal (internal transcribed spacer region amplicon sequencing) communiti
258 alysis based on the sequence of the internal transcribed spacer region of fungal ribosomal RNA encodi
259 con sequencing of the ribosomal RNA internal transcribed spacer region to examine the microdiversity
261 nomic assertions based on ribosomal internal transcribed spacer regions (ITS1/2) and expanded protein
262 rmatitidis; for 5, we sequenced the internal transcribed spacer regions, and for 4 others the whole g
263 specific sequence, belonging to the Internal Transcribed Spacers region, was used to design the real-
265 ogenesis display lower mutation rates on the transcribed strand and have low diversity in the populat
266 etween mutation types predominant on the non-transcribed strand and on the strand lagging during repl
268 Amazon, Apple, Google, IBM, and Microsoft-to transcribe structured interviews conducted with 42 white
272 , T. brucei uses RNA polymerase I (Pol I) to transcribe the active ES, which is unprecedented among e
275 ntron that is generated by RNA polymerase II transcribing the circular viral genome more than once.
279 ta to identify both uni- and bidirectionally transcribed TIRs with 70% improvement in accuracy, three
281 els of gene expression and the activities of transcribed/translated proteins, we introduce nucleic ac
282 the ONs from an RNase T1 digest of in vitro transcribed tRNA, which are purified after ribozyme-fusi
283 tronic gene cluster, emtABCD, differentially transcribed under estrogen-fed conditions and predicted
286 nd fourth clusters grouped genes differently transcribed upon exposure to diazepam and propranolol, r
292 erases to replicate entire viral genomes and transcribe viral mRNAs from individual viral genes as we
293 s that cross-link the head domain uncoat and transcribe viral positive-sense RNA with kinetics simila