ライフサイエンスコーパス: transcription initiation site

1 ce element (USE) and an element close to the transcription initiation site.

2 ucleotides -154 and -107 with respect to the transcription initiation site.

3 undary of which is in close proximity to the transcription initiation site.

4 d a TATA box and CCAAT sequence close to the transcription initiation site.

5 n enzyme accessibility of the ORF50 promoter transcription initiation site.

6 gion extending 400 base pairs from the major transcription initiation site.

7 ed at nucleotides -17 to -12 relative to the transcription initiation site.

8 ding from -169 to -369 bp upstream of the Wp transcription initiation site.

9 107 to -94) and (-39 to -26) relative to the transcription initiation site.

10 ed sequences from -73 to +22 relative to the transcription initiation site.

11 ng site approximately 2.9 kb upstream of the transcription initiation site.

12 region from -122 to -107 with respect to the transcription initiation site.

13 nds of distal colon RNA were used to map the transcription initiation site.

14 -base pair promoter sequence upstream of the transcription initiation site.

15 that it was located 43.5 bp upstream of the transcription initiation site.

16 were minus TATA and CAAT boxes close to the transcription initiation site.

17 e within 895 base pairs (bp) upstream of the transcription initiation site.

18 l of the promoter is located upstream of the transcription initiation site.

19 to the -295-to--243 position relative to the transcription initiation site.

20 and downstream of the alternative promoter's transcription initiation site.

21 irs and 1259-1189 base pairs upstream of the transcription initiation site.

22 e (crs) located between the TATA box and the transcription initiation site.

23 e binding site was proximal or distal to the transcription initiation site.

24 ere was a consensus Sp1 site upstream of the transcription initiation site.

25 at least 850 base pairs 5' to the consensus transcription initiation site.

26 0 to -70 and bp -30 to -40 upstream from the transcription initiation site.

27 ich each initiates at the polymerase (pol) I transcription initiation site.

28 ment of 147 base pairs immediately 5' to the transcription initiation site.

29 A box approximately 40 bp 5' of the presumed transcription initiation site.

30 upstream of the bSP-A2 gene TATA box and the transcription initiation site.

31 that interacts specifically with the hMTIIA transcription initiation site.

32 activity lies between bp -158 and +30 of the transcription initiation site.

33 transcripts initiating upstream of the known transcription initiation site.

34 GA repeats beginning 17 bp downstream of the transcription initiation site.

35 ntered at position -43.5 with respect to the transcription initiation site.

36 a region extending from the TATA box to the transcription initiation site.

37 on/deacetylation activity in the vicinity of transcription initiation site.

38 ruits Reb1p activator to the GAL10 antisense transcription initiation site.

39 several regions located within 150 nt of the transcription initiation site.

40 of the gene at position -41 relative to the transcription initiation site.

41 -specific TOP mRNAs produced via alternative transcription initiation sites.

42 as TATA boxless dual promoters with multiple transcription initiation sites.

43 II, chromatin marks characteristic of active transcription initiation sites.

44 e core promoter elements and target distinct transcription initiation sites.

45 ) and 220 bp (DDB2) upstream of the putative transcription initiation sites.

46 contains a TATA-less promoter with multiple transcription initiation sites.

47 of the divergent promoters and localized the transcription initiation sites.

48 lternative splicing and/or usage of distinct transcription initiation sites.

49 regulatory sequences and identified multiple transcription initiation sites.

50 located both upstream and downstream of the transcription initiation sites.

51 Primer extension identified several putative transcription initiation sites.

52 , or CCAAT consensus sequences, and multiple transcription initiation sites.

53 ere was no apparent TATA box upstream of the transcription initiation sites.

54 16 bases downstream from one of the putative transcription initiation sites.

55 detectable in the upstream regions of these transcription initiation sites.

56 cript is 2643 base pairs), we identified two transcription initiation sites.

57 s 83% identical, including the SP1 sites and transcription initiation sites.

58 Primer extension assays identified multiple transcription initiation sites.

59 ies of repetitive elements act as autonomous transcription initiation sites.

60 ne, and HepG2 cells identified multiple MRP2 transcription initiation sites.

61 rs to the accurate prediction of single-peak transcription initiation sites.

62 dicating increased utilization of downstream transcription initiation sites.

63 se p28 gene promoter and mapped its multiple transcription initiation sites.

64 ut is, instead, highly GC-rich with multiple transcription initiation sites.

65 t, functional Sp1 binding sites and multiple transcription initiation sites.

66 eosome positioning required to maintain open transcription-initiation sites.

67 cleotide segment (-14 to +1) upstream of the transcription initiation site (+1).

68 ded sequence for HAS2 exon 1, relocating the transcription initiation site 130 nucleotides upstream o

69 6 kb, corresponding to mRNA originating from transcription initiation sites -1392 and -72, respective

70 were found to constitute an operon with the transcription initiation site 169 nucleotides upstream f

71 nd early stationary phase when the preferred transcription initiation site (+1C) is replaced with A o

72 ence (-351 to -292) upstream of the proximal transcription initiation site (-252) contained cis-eleme

73 Primer extension analysis located a single transcription initiation site 264 base pairs (bp) upstre

74 Primer extension analysis localized two transcription initiation sites 323 and 255 base pairs up

75 The TATA mutation resulted in a shift of transcription initiation site 6 bp or longer upstream to

76 pT1 promoter region and identified the human transcription initiation site 86 bp upstream from the tr

77 anning nucleotides+259 to +398 from the prgQ transcription initiation site abolished the prgX gene pr

78 Sequences downstream from the transcription initiation site also contain major control

79 ted between 948 and 780 bp upstream from the transcription initiation site and another laboratory ide

80 EDNRBDelta1 and EDNRBDelta2 share the same transcription initiation site and are 560bp upstream of

81 l 3' 300-base pair portion contains a single transcription initiation site and confers basal and indu

82 epair was found at sequences surrounding the transcription initiation site and continuing downstream

83 mechanism of TMS1 silencing, we defined the transcription initiation site and detailed the DNA methy

84 a 3 ECS lies upstream of the major I gamma 3 transcription initiation site and displays more than 90%

85 control elements, beginning upstream of the transcription initiation site and extending through the

86 e element was located about 400 bp 5' of the transcription initiation site and includes three Ets tra

87 ucleosomes, N1 at -44 (3' boundary) from the transcription initiation site and N2 spanning the transc

88 In this study we identified a new RSK4 transcription initiation site and several alternative sp

89 her analysis of the HAS2 gene identified the transcription initiation site and showed that region F3,

90 three sites immediately upstream of the HAS2 transcription initiation site and that mutation of the c

91 of the full-length cDNA, which includes the transcription initiation site and the promoter region of

92 ation occurred at the previously mapped algD transcription initiation site and was not due to activat

93 ed from 217 to 2,584 bp upstream of the TERT transcription initiation site and were all in the opposi

94 ement (FXRE) located 90 kb downstream of the transcription initiation site and within the first intro

95 CGIs often include transcription initiation sites and display 'active' hist

96 The repeats lie between two separate transcription initiation sites and exert a repressive ef

97 The WRN promoter region has two transcription initiation sites and exhibits several feat

98 ree different mRNA transcripts with variable transcription initiation sites and exon usage.

99 ing aberrant gene transcription from cryptic transcription initiation sites and in mitigating RNA pol

100 Two transcription initiation sites and putative TATA boxes w

101 nscripts provide important information about transcription initiation sites and the approximate locat

102 Two transcription initiation sites and their flanking promot

103 d DNA region initially opens upstream of the transcription initiation site, and enlarges in a downstr

104 In addition, we have mapped a common transcription initiation site, and further determined th

105 acks both a TATA box and a CAAT box near the transcription initiation site, and has been shown to con

106 f a specific promoter region proximal to the transcription initiation site, and that suppression of R

107 ter region (PPR), which is upstream from the transcription initiation site, and the TNF-responsive el

108 found that initiated upstream of the normal transcription initiation site, and was strongly regulate

109 hromosomal region 2q33.2, has three putative transcription initiation sites, and is transcribed as a

110 ated at considerable distances downstream of transcription initiation sites, and many genes have mult

111 We mapped the transcription initiation site approximately 116 bp 5' to

112 Primer extension assay revealed a transcription initiation site approximately 242 bp upstr

113 quences located within less than 1 kb of its transcription initiation site are sufficient for high-le

114 RNA polymerase transcription initiation sites are largely unknown in Ca

115 Surrounding the transcription initiation sites are motifs characteristic

116 TATA box transcription initiation sites are present for both of t

117 Putative TATA box-containing transcription initiation sites are present for somatic N

118 at sequences from -5 to +25 (relative to the transcription initiation site) are sufficient to support

119 bp region located 4 kb upstream of the HoxA9 transcription initiation site as a SUZ12 binding site, w

120 hermore both tissues appear to have the same transcription initiation site as determined by nuclease

121 e used to define a 5-nucleotide block at the transcription initiation site as essential for interacti

122 NFRs associated with transcription initiation sites as well as those not asso

123 The region proximal to the transcription initiation site at -127 bound Sp1, Sp3, an

124 nsion and RNase protection assays mapped the transcription initiation site at 32 nucleotides upstream

125 Primer extension assay localized the transcription initiation site at 442 (human) or 440 (mou

126 NuA4 KAT associates with the GAL10 antisense transcription initiation site at the 3' end of the codin

127 sion and S1 nuclease analysis identified two transcription initiation sites at -72 and -1392 from the

128 on initiation codon identified two potential transcription initiation sites, at nucleotides 2878 and

129 ymerase II (Pol II) pauses downstream of the transcription initiation site before beginning productiv

130 uences directly upstream of the repositioned transcription initiation site but not of the newly desig

131 site 1) and bp -140 (site 2) relative to the transcription initiation site, but a mutational analysis

132 1.3-kb putative p19 promoter and defined its transcription initiation sites by the 5'-rapid amplifica

133 region (-29 to -163) that contained multiple transcription initiation sites; (c) not dependent on oth

134 oter (nucleotides +34 to +58 relative to the transcription initiation site) contained a putative Myb-

135 he human LXRalpha gene was isolated, and the transcription initiation site delineated.

136 the region upstream of the putative gene 50 transcription initiation site demonstrated orientation-d

137 e position -88 to +171 relative to the major transcription initiation site designated +1), containing

138 gion of the promoter co-mapped with multiple transcription initiation sites, DNase I footprints, gel

139 ly about 70 nucleotides (nt) upstream of the transcription initiation site exhibited patterns of beta

140 he region upstream of the distal gene 50/RTA transcription initiation site exhibited promoter activit

141 The mutation had no effect on transcription initiation site fidelity by either RNA pol

142 nontemplate strand sequence GGGC at the pyrG transcription initiation site (first G =+1) and the lead

143 During suppression, alternative transcription initiation sites flanking the Mu1 transpos

144 upstream regions more than 1,000 bp from the transcription initiation site for most of these genes.

145 The transcription initiation site for pri-miR-216a was delin

146 A cluster of transcription initiation sites for the 2.8 kb PSGR mRNA

147 Previous studies have identified multiple transcription initiation sites for the glutamate recepto

148 The major transcription-initiation site for rat liver determined b

149 xtension of rat brain mRNA revealed multiple transcription initiation sites from -340 to -481 bases u

150 In addition, 5' transcription initiation sites from these two promoters

151 A major YY1 gene transcription initiation site has been mapped to 478 bp

152 Four transcription initiation sites have been identified by f

153 SIII at -2.1 kb and -0.13 kb upstream of the transcription initiation site, HSIV and HSV within intro

154 Two major transcription initiation sites identified by reverse tra

155 similar distances upstream of their probable transcription initiation sites, identified by primer ext

156 PTTG binds to c-myc promoter near the transcription initiation site in a protein complex conta

157 The major transcription initiation site in kNBC1 is located 192 nu

158 In this paper, we characterize the Hoxa13 transcription initiation site in limbs and determine the

159 I hypersensitivity site (DHS) near the hTERT transcription initiation site in telomerase-positive cel

160 NR6 TATA box, direct integration at the SNR6 transcription initiation site in the absence of detectab

161 Here, we show that the absence of a strong transcription initiation site in the G11 gene results in

162 zed to nucleotides -196/-184 relative to the transcription initiation site in the IL-10 promoter.

163 with a region 482 to 684 bp upstream of the transcription initiation site in vitro.

164 olecular technique for the identification of transcription initiation sites in bacteria, a functional

165 The use of two alternative transcription initiation sites in the LAF3 gene generate

166 Characterization of Ps1 transcription initiation sites in this allelic series re

167 The distance between the transcription initiation sites in UTR1 and the first pro

168 The base exchange at -509 (from the transcription initiation site) in the TGF-beta promoter

169 omoter mutation, a TG deletion adjacent to a transcription initiation site, in a patient with ankyrin

170 may occur in sequences near and upstream of transcription initiation sites, in intronic regions, and

171 rived with respect to experimentally defined transcription initiation sites, in some cases we observe

172 tains a TATA-less promoter with two putative transcription initiation sites (Inr), three RBP-Jkappa s

173 Another E-box, located 60 bp 3' to the transcription initiation site, interacts with USF1 and U

174 30 that lies between the Rap1p sites and the transcription initiation site is also sufficient to sile

175 that a region located 96-bp upstream of the transcription initiation site is critical for the activa

176 show that an E-box element downstream of the transcription initiation site is critical to differentia

177 tection experiments indicated that the major transcription initiation site is located 211 bp 5' to th

178 The transcription initiation site is located 462 bp upstream

179 A single major transcription initiation site is located 59 nucleotides

180 T promoter when the ICP4-binding site at its transcription initiation site is mutated, suggesting tha

181 ated 4.5 kb upstream to the human ferritin H transcription initiation site is responsible for the oxi

182 w that a 0.9-kb sequence upstream of the Nrl transcription initiation site is sufficient to drive rep

183 at the distal TIE located at 401 bp from the transcription initiation site, is required for TGFbeta r

184 a position centered at -42.5 relative to the transcription initiation site, is thought to function as

185 , although this element is downstream of the transcription initiation site, it is capable of initiati

186 The region surrounding the transcription initiation sites lacks TATA and CCAAT cons

187 The major proximal transcription initiation site lies within intron 1, is u

188 e, RNA polymerase III is redirected to a new transcription initiation site located approximately one

189 rimer extension analysis identified two rpoS transcription initiation sites located 43 bp (P1) and 63

190 oter, a 1703-bp fragment, and determined the transcription initiation sites located at +1 and +92 bp

191 novel gene 50 transcripts initiating from 2 transcription initiation sites located upstream of the c

192 By reference to the transcription initiation site mapped, we analyzed the 5'

193 A discrete transcription initiation site may not be necessary for m

194 in a 1-kb region that is 2 to 3 kb 5' of the transcription initiation site of a gene, 2610028F08RIK,

195 base pairs of genomic DNA directly 5' to the transcription initiation site of HOXA9EC contained the i

196 ly, a cis-element, located downstream of the transcription initiation site of murine heavy chain vari

197 is of RNase protection assays identified the transcription initiation site of prpL and confirmed that

198 This locus overlaps the transcription initiation site of RASGRF1, which is highl

199 etween the predicted promoter region and the transcription initiation site of scrib.

200 ases were restricted to within 150 bp of the transcription initiation site of the active Drosophila m

201 ubunits of E-RC1 are both recruited near the transcription initiation site of the beta-globin promote

202 ed at nucleotides -17 to -12 relative to the transcription initiation site of the BZLF1 promoter.

203 mic DNA fragment library and to identify the transcription initiation site of the CDT6 gene.

204 located within the 200 bp upstream from the transcription initiation site of the FcRgamma promoter.

205 ic variation in the region upstream from the transcription initiation site of the gene encoding B lym

206 on A/T polymorphism at -3081 upstream of the transcription initiation site of the human norepinephrin

207 nd between -910 and -2000 bp 5'-flanking the transcription initiation site of the Krt1.12 gene.

208 Here we have characterized the major transcription initiation site of the mnt gene.

209 (kb) sequence located 3.4-kb upstream of the transcription initiation site of the murine Ada gene, wh

210 e located approximately 2 kb upstream of the transcription initiation site of the PAX4 gene.

211 We determined the transcription initiation site of the primary transcript

212 Transcription initiation site of the TASR gene was deter

213 We mapped the transcription initiation sites of all three primary miRN

214 identified the ICP4-binding sequences at the transcription initiation sites of both HSV-2 LAT (pri-mi

215 The transcription initiation sites of both xenA and xenB wer

216 thymocytes that GABPalpha is associated with transcription initiation sites of genes encoding key mol

217 s-like element inserts preferentially at the transcription initiation sites of genes transcribed by R

218 Ty3 integrates into the transcription initiation sites of genes transcribed by R

219 egrates within one or two nucleotides of the transcription initiation sites of genes transcribed by R

220 Ty3 inserts at transcription initiation sites of genomic tRNA genes and

221 ire minimal promoter and all of the multiple transcription initiation sites of the HPRT gene.

222 The major transcription initiation sites of the human and mouse CD

223 and 3 nucleotides, respectively, before the transcription initiation sites of the two tRNA2Ala genes

224 The Myc transactivation domain binds to the transcription initiation sites of these promoters and st

225 n of the retroviruslike element Ty3 near the transcription initiation sites of tRNA genes requires tr

226 at -336, -143, +66, and +186 relative to the transcription initiation site on the HIV long terminal r

227 sion analysis of the gene revealed two major transcription initiation sites: one in the 5' flanking r

228 ergenic region, that corresponds either to a transcription initiation site or to an RNase E or RNase

229 (3) epigenetic marks associated with active transcription initiation sites overlap with regions of r

230 The minor distal transcription initiation site, preceded by a TATA sequen

231 cruitment of NuA4 KAT to the GAL10 antisense transcription initiation site promotes GAL10 antisense t

232 tream of the proximal and distal gene 50/RTA transcription initiation sites revealed that the distal

233 ganized in a head-to-head fashion with major transcription initiation sites separated by approximatel

234 spanning thyroid hormone response element to transcription initiation site slide bi-directionally, wi

235 creases the number of transcripts with novel transcription initiation sites, spliced variants and alt

236 Two transcription initiation sites starting at the first and

237 tification of clustered but distinct M2 gene transcription initiation sites suggesting the presence o

238 tion revealed that there are two independent transcription initiation sites (T1 and T2).

239 find that a 14.8-kb fragment upstream of the transcription initiation site targets expression to both

240 ified sequences within 73 bp upstream of the transcription initiation site that are required for the

241 e was identified 440 bp upstream of the MRP2 transcription initiation site that contains an everted r

242 ed a GC-rich region between the TATA box and transcription initiation site that contribute to repress

243 The recovery of infectious viruses with transcription initiation sites that occurred at nucleoti

244 promoter element (-24 to -94 relative to the transcription initiation site) that is essential for mai

245 cription initiation site and N2 spanning the transcription initiation site, that are relevant to acti

246 The transcription initiation site (TIS) was identified at th

247 prisingly, accurate detection of human mtDNA transcription initiation sites (TISs) in the heavy and l

248 We assign transcription initiation sites to 7691 protein-coding ge

249 tension analysis localized an iron-regulated transcription initiation site upstream of the alcR open

250 ription experiments revealed clusters of RNA transcription initiation sites upstream of exons A, B, a

251 This operon has transcription initiation sites upstream of mutY, in the

252 This operon has transcription initiation sites upstream of radC, in the

253 The nth operon has transcription initiation sites upstream of the first and

254 This operon has two confirmed transcription initiation sites upstream of the first ope

255 decreased levels of gene expression, altered transcription initiation site utilization and exhibited

256 ed expression of a reporter gene and altered transcription initiation site utilization.

257 s bind sequence-specifically upstream of the transcription initiation site via a DNA-binding domain (

258 d the region 83 to 124 bp upstream of the 5' transcription initiation site was crucial for maximal co

259 The transcription initiation site was determined by both S1

260 The putative transcription initiation site was identified 50bp upstre

261 ate a study of agu gene regulation, the aguB transcription initiation site was identified by primer e

262 The transcription initiation site was identified using prime

263 OX promoter ( approximately 2 kb) in which a transcription initiation site was mapped at -27 from the

264 By using primer extension, a putative transcription initiation site was mapped at 66 bases 5'

265 ence between -133 and -98 bp relative to the transcription initiation site was primarily responsible

266 ence between -133 and -98 bp relative to the transcription initiation site was primarily responsible

267 GTCAT, located at -72 to -59 relative to the transcription initiation site was shown to be essential

268 uence between -2,190 and +27 relative to the transcription initiation site was sufficient to promote

269 howed that the classical TATA-box motif near transcription initiation sites was absent.

270 oter region (-2682 to +56 bp relative to the transcription initiation site) was isolated.

271 presses Zp via the ZV motif located near the transcription initiation site, was abundant in HeLa cell

272 g sites and located upstream of the proximal transcription initiation site, was required for PDGF-BB

273 In the region immediately upstream of the transcription initiation site we identified two closely

274 Upstream of this intron and the transcription initiation site, we identified an approxim

275 When we examined alternative transcription initiation sites, we determined that anoth

276 Close to the transcription initiation sites, we identified a binding

277 king sequences up to 2400 bp upstream of the transcription initiation site were fused to the lucifera

278 quences located 86 to 218 bp upstream of the transcription initiation site were required for optimal

279 located between -70 and +27 relative to the transcription initiation site were sufficient to confer

280 Transcription initiation sites were highly supported by

281 plification of cDNA ends) analysis, multiple transcription initiation sites were identified including

282 Using 5' RACE, two transcription initiation sites were identified suggestin

283 The transcription initiation sites were localized to -23, -2

284 Both transcription initiation sites were mapped by primer ext

285 The transcription initiation sites were mapped by primer ext

286 Transcription initiation sites were similar in Ac and Ds

287 NAs demonstrated that at least two potential transcription initiation sites were used to express the

288 quired nucleotide residues downstream of the transcription initiation site which were also important

289 rimer extension demonstrated three potential transcription-initiation sites which were detected consi

290 fected fibroblasts revealed a novel upstream transcription initiation site, which was also utilized d

291 ative regulatory elements and identified the transcription initiation site, which was mapped to 96 an

292 de -89 to nucleotide -64 with respect to the transcription initiation site, which was required for th

293 itive site 4.5 kb upstream of the Ly49A gene transcription initiation site, which was shown to be ess

294 ely downstream (approximately 0.6 kb) of the transcription initiation site while sparing further down

295 f cyclin D1, located at -116 to -99 from the transcription initiation site, with a molecular beacon c

296 -length LCA1 mRNA sequence derived from each transcription initiation site, with LCA1C additionally c

297 e AAV5 transcripts demonstrated an efficient transcription initiation site within the AAV5 inverted t

298 cript apparently originates from a secondary transcription initiation site within the gene and potent

299 Surprisingly, TL-seq identified transcription initiation sites within 6% of protein-codi

300 a site centered at -64.5 with respect to the transcription initiation site, working in conjunction wi